Wall clock time and date at job start Tue Mar 31 2020 10:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47233 * 2 1 4 4 H 1.09000 * 109.46848 * 55.00775 * 3 2 1 5 5 F 1.39897 * 109.47760 * 295.00603 * 3 2 1 6 6 C 1.50697 * 109.47345 * 175.00375 * 3 2 1 7 7 O 1.21285 * 119.99691 * 44.99923 * 6 3 2 8 8 N 1.34771 * 120.00460 * 225.00718 * 6 3 2 9 9 C 1.46501 * 120.00332 * 180.02562 * 8 6 3 10 10 C 1.53002 * 109.47050 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46312 * 60.02564 * 10 9 8 12 12 O 1.42907 * 109.47086 * 299.97101 * 11 10 9 13 13 C 1.42890 * 113.99951 * 180.02562 * 12 11 10 14 14 C 1.53043 * 109.45776 * 179.97438 * 10 9 8 15 15 C 1.53188 * 109.31445 * 58.65376 * 14 10 9 16 16 N 1.46925 * 108.77701 * 54.63452 * 15 14 10 17 17 C 1.36933 * 120.63218 * 126.36931 * 16 15 14 18 18 H 1.07998 * 120.00198 * 332.45537 * 17 16 15 19 19 C 1.38819 * 119.99952 * 152.17898 * 17 16 15 20 20 N 1.31617 * 120.00072 * 343.15781 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.15974 * 19 17 16 22 22 H 1.48501 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00274 * 21 19 17 24 24 H 1.48504 * 109.46877 * 240.00049 * 21 19 17 25 25 C 1.46933 * 118.73707 * 306.64093 * 16 15 14 26 26 C 1.52758 * 109.00408 * 53.31408 * 25 16 15 27 27 H 1.09004 * 109.46541 * 299.99088 * 1 2 3 28 28 H 1.08992 * 109.47374 * 59.99186 * 1 2 3 29 29 H 1.09005 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46473 * 240.00380 * 2 1 3 31 31 H 1.08992 * 109.47374 * 120.00814 * 2 1 3 32 32 H 0.97007 * 119.99739 * 359.97438 * 8 6 3 33 33 H 1.08992 * 109.47530 * 59.99504 * 9 8 6 34 34 H 1.09004 * 109.47029 * 299.99079 * 9 8 6 35 35 H 1.08998 * 109.47256 * 59.97094 * 11 10 9 36 36 H 1.09008 * 109.47070 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.47329 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47245 * 299.99901 * 13 12 11 39 39 H 1.09005 * 109.47382 * 60.00004 * 13 12 11 40 40 H 1.08999 * 109.49781 * 298.69817 * 14 10 9 41 41 H 1.09005 * 109.49745 * 178.60564 * 14 10 9 42 42 H 1.09000 * 109.58790 * 294.84843 * 15 14 10 43 43 H 1.09003 * 109.70840 * 174.49438 * 15 14 10 44 44 H 0.97002 * 120.00067 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58175 * 173.14238 * 25 16 15 46 46 H 1.08993 * 109.58871 * 293.56927 * 25 16 15 47 47 H 1.09006 * 109.56332 * 185.55045 * 26 25 16 48 48 H 1.08994 * 109.39241 * 65.51309 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 9 1.6699 2.0681 -1.1953 6 6 3.5420 1.4442 0.1237 7 8 4.2064 0.6810 -0.5448 8 7 4.1468 2.2938 0.9773 9 6 5.6069 2.2960 1.0972 10 6 6.0327 3.3460 2.1254 11 6 5.4105 3.0122 3.4826 12 8 3.9862 3.0103 3.3662 13 6 3.3038 2.7085 4.5848 14 6 7.5580 3.3476 2.2508 15 6 8.1785 3.6481 0.8829 16 7 7.6138 4.9050 0.3731 17 6 8.4332 5.9283 -0.0226 18 1 9.4146 6.0344 0.4154 19 6 8.0045 6.8257 -0.9911 20 7 6.9806 6.5239 -1.7610 21 14 8.8811 8.4619 -1.2016 22 1 9.9914 8.5584 -0.2201 23 1 9.4276 8.5570 -2.5790 24 1 7.9206 9.5710 -0.9723 25 6 6.1529 5.0454 0.3018 26 6 5.5551 4.7273 1.6711 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.6154 2.9045 1.5119 33 1 6.0505 2.5338 0.1305 34 1 5.9464 1.3119 1.4206 35 1 5.7499 2.0281 3.8057 36 1 5.7141 3.7600 4.2153 37 1 2.2276 2.7265 4.4127 38 1 3.5995 1.7182 4.9312 39 1 3.5638 3.4503 5.3401 40 1 7.8955 2.3706 2.5968 41 1 7.8635 4.1124 2.9648 42 1 7.9489 2.8374 0.1914 43 1 9.2594 3.7474 0.9834 44 1 6.6809 7.1511 -2.4375 45 1 5.8974 6.0673 0.0216 46 1 5.7547 4.3511 -0.4379 47 1 4.4671 4.7323 1.6045 48 1 5.8790 5.4790 2.3909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162414042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:44 Heat of formation + Delta-G solvation = -116.798906 kcal Electronic energy + Delta-G solvation = -28875.696809 eV Core-core repulsion = 24880.661746 eV Total energy + Delta-G solvation = -3995.035063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.77660 -40.01737 -38.58011 -37.15337 -34.57863 -34.02915 -33.06578 -30.94218 -29.98576 -28.24117 -27.70624 -26.10059 -25.32880 -23.86600 -22.37258 -21.99705 -20.90826 -20.24582 -18.56288 -17.51029 -16.87036 -16.38353 -16.21244 -15.95387 -15.75058 -15.35627 -15.14106 -14.68683 -14.32170 -14.26111 -13.90134 -13.74357 -13.43752 -13.26587 -13.03175 -12.90185 -12.74941 -12.37079 -12.31992 -11.95032 -11.94195 -11.63271 -11.44951 -11.30053 -11.25026 -10.95785 -10.92117 -10.72633 -10.55394 -10.23742 -10.19254 -9.92921 -9.77346 -9.54486 -9.47232 -9.40957 -8.67328 -8.42408 -6.64114 -5.75841 -3.18751 2.69194 3.19507 3.38441 3.46344 3.48364 3.70559 4.40254 4.51209 4.58091 4.78569 4.79159 4.91068 5.00033 5.18622 5.20270 5.24513 5.30455 5.32122 5.41727 5.48403 5.50054 5.51341 5.55042 5.62564 5.68613 5.72302 5.95214 5.98727 6.02973 6.03573 6.20737 6.33908 6.37434 6.58681 6.62072 6.68175 6.75911 6.83694 6.95514 7.05757 7.38987 7.70614 7.80910 7.82350 8.42438 8.47067 9.23536 9.86929 10.43371 11.32395 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.004134 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.672734 B = 6771.400696 C = 7805.848801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.084 3.916 4 H 0.096 0.904 5 F -0.190 7.190 6 C 0.485 3.515 7 O -0.534 6.534 8 N -0.697 5.697 9 C 0.129 3.871 10 C -0.059 4.059 11 C 0.072 3.928 12 O -0.393 6.393 13 C 0.033 3.967 14 C -0.119 4.119 15 C 0.143 3.857 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.170 3.830 26 C -0.126 4.126 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.410 0.590 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.087 0.913 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.250 -10.521 12.838 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.044 3.956 4 H 0.114 0.886 5 F -0.171 7.171 6 C 0.268 3.732 7 O -0.411 6.411 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.060 4.060 11 C -0.004 4.004 12 O -0.312 6.312 13 C -0.063 4.063 14 C -0.159 4.159 15 C 0.016 3.984 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.044 3.956 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.918 -10.880 12.034 19.555 hybrid contribution 0.240 1.169 0.406 1.261 sum -10.678 -9.711 12.440 19.055 Atomic orbital electron populations 1.21775 0.94410 1.02345 1.02477 1.21963 0.96958 0.93975 1.04851 1.21592 0.92763 0.95747 0.85459 0.88613 1.92885 1.92057 1.83903 1.48271 1.20852 0.90079 0.81560 0.80748 1.90710 1.66056 1.40123 1.44168 1.46315 1.08612 1.38715 1.41704 1.21519 0.79423 0.97719 1.00732 1.20819 0.96205 0.96869 0.92113 1.22778 0.79829 0.99653 0.98164 1.87543 1.19327 1.91849 1.32492 1.22707 0.97457 0.99027 0.87159 1.21989 0.92213 1.00501 1.01170 1.20931 0.96604 0.89581 0.91271 1.44039 1.01513 1.11441 1.74379 1.19208 0.99219 1.04089 1.15828 0.91652 1.25048 0.98727 1.00182 0.95618 1.70051 1.28540 1.34941 1.20843 0.86254 0.78975 0.84236 0.77483 1.20308 1.21749 1.21618 1.20721 0.82772 1.01994 0.90123 1.22118 0.99145 0.93647 1.01608 0.92442 0.91904 0.91933 0.89515 0.90025 0.74802 0.89564 0.92407 0.93530 0.92998 0.89882 0.94337 0.94087 0.92682 0.91495 0.96038 0.92520 0.93666 0.89531 0.96064 0.92720 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.83 37.16 0.37 -0.90 16 2 C -0.14 -1.48 5.41 -26.73 -0.14 -1.63 16 3 C 0.08 1.08 3.77 -27.89 -0.11 0.97 16 4 H 0.10 0.93 7.99 -51.93 -0.42 0.52 16 5 F -0.19 -2.95 16.75 2.25 0.04 -2.91 16 6 C 0.48 7.93 7.17 -10.99 -0.08 7.85 16 7 O -0.53 -10.73 16.61 5.55 0.09 -10.64 16 8 N -0.70 -10.77 4.63 -60.30 -0.28 -11.05 16 9 C 0.13 2.17 3.81 -4.04 -0.02 2.15 16 10 C -0.06 -0.92 0.51 -154.46 -0.08 -1.00 16 11 C 0.07 0.89 4.80 37.16 0.18 1.06 16 12 O -0.39 -4.53 6.73 -35.23 -0.24 -4.77 16 13 C 0.03 0.27 11.01 101.05 1.11 1.38 16 14 C -0.12 -1.90 4.90 -26.61 -0.13 -2.03 16 15 C 0.14 2.89 6.05 -3.71 -0.02 2.87 16 16 N -0.59 -14.51 3.00 -172.58 -0.52 -15.03 16 17 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 18 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -26.41 11.18 55.49 0.62 -25.79 16 21 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.17 3.99 4.81 -3.93 -0.02 3.97 16 26 C -0.13 -2.29 4.57 -26.83 -0.12 -2.41 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.56 7.93 -51.93 -0.41 0.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.41 5.73 4.60 -40.82 -0.19 5.54 16 33 H 0.09 1.78 4.99 -51.93 -0.26 1.52 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 43 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 46 H 0.02 0.55 6.70 -51.93 -0.35 0.20 16 47 H 0.05 0.93 6.50 -51.93 -0.34 0.60 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -32.18 372.29 -7.07 -39.25 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -8.07 Total: 3.38 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 0.71 Total: 5.24 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.18 Total: -51.86 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.14 Total: -15.41 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.18 -7.07 -39.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.548 kcal (2) G-P(sol) polarization free energy of solvation -32.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds