Wall clock time and date at job start Tue Mar 31 2020 10:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47233 * 2 1 4 4 H 1.09000 * 109.46848 * 55.00775 * 3 2 1 5 5 F 1.39897 * 109.47760 * 295.00603 * 3 2 1 6 6 C 1.50697 * 109.47345 * 175.00375 * 3 2 1 7 7 O 1.21285 * 119.99691 * 44.99923 * 6 3 2 8 8 N 1.34771 * 120.00460 * 225.00718 * 6 3 2 9 9 C 1.46501 * 120.00332 * 180.02562 * 8 6 3 10 10 C 1.53002 * 109.47050 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.46312 * 60.02564 * 10 9 8 12 12 O 1.42907 * 109.47086 * 299.97101 * 11 10 9 13 13 C 1.42890 * 113.99951 * 180.02562 * 12 11 10 14 14 C 1.53043 * 109.45776 * 179.97438 * 10 9 8 15 15 C 1.53188 * 109.31445 * 58.65376 * 14 10 9 16 16 N 1.46925 * 108.77701 * 54.63452 * 15 14 10 17 17 C 1.36933 * 120.63218 * 126.36931 * 16 15 14 18 18 H 1.07998 * 120.00198 * 332.45537 * 17 16 15 19 19 C 1.38819 * 119.99952 * 152.17898 * 17 16 15 20 20 N 1.31617 * 120.00072 * 343.15781 * 19 17 16 21 21 Si 1.86804 * 119.99834 * 163.15974 * 19 17 16 22 22 H 1.48501 * 109.47135 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.46995 * 120.00274 * 21 19 17 24 24 H 1.48504 * 109.46877 * 240.00049 * 21 19 17 25 25 C 1.46933 * 118.73707 * 306.64093 * 16 15 14 26 26 C 1.52758 * 109.00408 * 53.31408 * 25 16 15 27 27 H 1.09004 * 109.46541 * 299.99088 * 1 2 3 28 28 H 1.08992 * 109.47374 * 59.99186 * 1 2 3 29 29 H 1.09005 * 109.47037 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46473 * 240.00380 * 2 1 3 31 31 H 1.08992 * 109.47374 * 120.00814 * 2 1 3 32 32 H 0.97007 * 119.99739 * 359.97438 * 8 6 3 33 33 H 1.08992 * 109.47530 * 59.99504 * 9 8 6 34 34 H 1.09004 * 109.47029 * 299.99079 * 9 8 6 35 35 H 1.08998 * 109.47256 * 59.97094 * 11 10 9 36 36 H 1.09008 * 109.47070 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.47329 * 180.02562 * 13 12 11 38 38 H 1.09005 * 109.47245 * 299.99901 * 13 12 11 39 39 H 1.09005 * 109.47382 * 60.00004 * 13 12 11 40 40 H 1.08999 * 109.49781 * 298.69817 * 14 10 9 41 41 H 1.09005 * 109.49745 * 178.60564 * 14 10 9 42 42 H 1.09000 * 109.58790 * 294.84843 * 15 14 10 43 43 H 1.09003 * 109.70840 * 174.49438 * 15 14 10 44 44 H 0.97002 * 120.00067 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.58175 * 173.14238 * 25 16 15 46 46 H 1.08993 * 109.58871 * 293.56927 * 25 16 15 47 47 H 1.09006 * 109.56332 * 185.55045 * 26 25 16 48 48 H 1.08994 * 109.39241 * 65.51309 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 9 1.6699 2.0681 -1.1953 6 6 3.5420 1.4442 0.1237 7 8 4.2064 0.6810 -0.5448 8 7 4.1468 2.2938 0.9773 9 6 5.6069 2.2960 1.0972 10 6 6.0327 3.3460 2.1254 11 6 5.4105 3.0122 3.4826 12 8 3.9862 3.0103 3.3662 13 6 3.3038 2.7085 4.5848 14 6 7.5580 3.3476 2.2508 15 6 8.1785 3.6481 0.8829 16 7 7.6138 4.9050 0.3731 17 6 8.4332 5.9283 -0.0226 18 1 9.4146 6.0344 0.4154 19 6 8.0045 6.8257 -0.9911 20 7 6.9806 6.5239 -1.7610 21 14 8.8811 8.4619 -1.2016 22 1 9.9914 8.5584 -0.2201 23 1 9.4276 8.5570 -2.5790 24 1 7.9206 9.5710 -0.9723 25 6 6.1529 5.0454 0.3018 26 6 5.5551 4.7273 1.6711 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 3.6154 2.9045 1.5119 33 1 6.0505 2.5338 0.1305 34 1 5.9464 1.3119 1.4206 35 1 5.7499 2.0281 3.8057 36 1 5.7141 3.7600 4.2153 37 1 2.2276 2.7265 4.4127 38 1 3.5995 1.7182 4.9312 39 1 3.5638 3.4503 5.3401 40 1 7.8955 2.3706 2.5968 41 1 7.8635 4.1124 2.9648 42 1 7.9489 2.8374 0.1914 43 1 9.2594 3.7474 0.9834 44 1 6.6809 7.1511 -2.4375 45 1 5.8974 6.0673 0.0216 46 1 5.7547 4.3511 -0.4379 47 1 4.4671 4.7323 1.6045 48 1 5.8790 5.4790 2.3909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162414042.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:43 Heat of formation + Delta-G solvation = -137.858124 kcal Electronic energy + Delta-G solvation = -28876.610006 eV Core-core repulsion = 24880.661746 eV Total energy + Delta-G solvation = -3995.948260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.92876 -41.33673 -39.90534 -38.27911 -36.14160 -34.94451 -34.62270 -32.72774 -31.65024 -29.35058 -28.91602 -27.23036 -26.46026 -25.48171 -23.92596 -22.97478 -22.51443 -21.50353 -20.00709 -19.00388 -18.25593 -17.72796 -17.21095 -17.08504 -16.87309 -16.70864 -16.35552 -16.20582 -15.68427 -15.45151 -15.31375 -15.19593 -14.79369 -14.76186 -14.37576 -14.09084 -13.90352 -13.74507 -13.33553 -13.23823 -13.07376 -12.96448 -12.84634 -12.67424 -12.56107 -12.28618 -12.26123 -12.01613 -11.96843 -11.83864 -11.82899 -11.47173 -11.22984 -11.11955 -10.79832 -10.55831 -10.47869 -10.02221 -8.66353 -7.86554 -5.32409 1.38908 1.45265 1.46640 1.57621 2.02715 2.51153 2.80969 3.28035 3.45038 3.62312 3.64824 3.70930 3.73547 3.90558 3.97910 3.98528 4.26419 4.41960 4.47304 4.50266 4.53531 4.55771 4.62856 4.68765 4.71604 4.71794 4.77639 4.82918 4.90845 4.97834 5.03558 5.03890 5.15137 5.16634 5.22987 5.26494 5.35603 5.36359 5.45414 5.54516 5.64977 5.78725 6.26483 6.39053 6.56489 7.15280 7.18179 7.87384 8.38711 9.19631 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.004134 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.672734 B = 6771.400696 C = 7805.848801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.083 3.917 4 H 0.136 0.864 5 F -0.208 7.208 6 C 0.477 3.523 7 O -0.580 6.580 8 N -0.687 5.687 9 C 0.136 3.864 10 C -0.052 4.052 11 C 0.082 3.918 12 O -0.411 6.411 13 C 0.028 3.972 14 C -0.108 4.108 15 C 0.137 3.863 16 N -0.609 5.609 17 C -0.260 4.260 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.290 1.290 25 C 0.182 3.818 26 C -0.110 4.110 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.419 0.581 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.007 0.993 43 H 0.058 0.942 44 H 0.247 0.753 45 H 0.047 0.953 46 H -0.014 1.014 47 H 0.066 0.934 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -11.099 16.281 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.044 3.956 4 H 0.153 0.847 5 F -0.189 7.189 6 C 0.261 3.739 7 O -0.460 6.460 8 N -0.343 5.343 9 C 0.012 3.988 10 C -0.053 4.053 11 C 0.006 3.994 12 O -0.330 6.330 13 C -0.067 4.067 14 C -0.147 4.147 15 C 0.011 3.989 16 N -0.332 5.332 17 C -0.390 4.390 18 H 0.088 0.912 19 C -0.249 4.249 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.217 1.217 25 C 0.056 3.944 26 C -0.149 4.149 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.025 0.975 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.004 0.996 47 H 0.084 0.916 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.803 -11.461 15.534 22.627 hybrid contribution 0.536 1.287 -0.691 1.556 sum -11.267 -10.174 14.843 21.231 Atomic orbital electron populations 1.21765 0.92260 1.03521 1.02956 1.21977 0.98680 0.92212 1.04512 1.21888 0.90114 0.97752 0.85828 0.84665 1.92849 1.91934 1.84399 1.49734 1.21607 0.91735 0.80704 0.79842 1.90683 1.67500 1.42006 1.45795 1.46290 1.08162 1.38414 1.41476 1.21327 0.80130 0.98604 0.98758 1.20716 0.96268 0.94328 0.93976 1.22560 0.80463 1.01127 0.95282 1.87477 1.18778 1.92173 1.34574 1.22920 0.98083 0.99789 0.85949 1.21845 0.92182 1.02655 0.98005 1.21099 0.96995 0.87320 0.93461 1.44315 1.01763 1.12579 1.74590 1.19594 0.99573 1.04680 1.15173 0.91219 1.25834 0.99806 1.03529 0.95708 1.70233 1.30505 1.35889 1.21790 0.85210 0.78117 0.79973 0.77170 1.18704 1.22310 1.21699 1.20427 0.82836 0.98635 0.92515 1.21868 0.99422 0.95679 0.97959 0.90400 0.92964 0.90457 0.91864 0.88447 0.73692 0.94366 0.91375 0.91494 0.91697 0.88163 0.93285 0.93378 0.89130 0.90681 0.97521 0.92396 0.94343 0.93472 0.99629 0.91598 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.83 71.98 0.71 -1.39 16 2 C -0.14 -2.70 5.41 30.59 0.17 -2.53 16 3 C 0.08 2.03 3.77 29.84 0.11 2.15 16 4 H 0.14 2.22 7.99 -2.39 -0.02 2.20 16 5 F -0.21 -6.45 16.75 44.97 0.75 -5.70 16 6 C 0.48 15.59 7.17 87.66 0.63 16.21 16 7 O -0.58 -24.09 16.61 -3.05 -0.05 -24.14 16 8 N -0.69 -20.74 4.63 -463.06 -2.14 -22.88 16 9 C 0.14 4.52 3.81 86.38 0.33 4.85 16 10 C -0.05 -1.52 0.51 -52.15 -0.03 -1.55 16 11 C 0.08 1.69 4.80 71.98 0.35 2.04 16 12 O -0.41 -7.92 6.73 -148.98 -1.00 -8.92 16 13 C 0.03 0.34 11.01 113.37 1.25 1.59 16 14 C -0.11 -3.20 4.90 30.67 0.15 -3.05 16 15 C 0.14 5.58 6.05 86.36 0.52 6.11 16 16 N -0.61 -30.77 3.00 -699.93 -2.10 -32.87 16 17 C -0.26 -14.45 9.58 84.04 0.81 -13.64 16 18 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16 19 C -0.05 -3.07 4.92 84.86 0.42 -2.65 16 20 N -0.94 -57.71 11.18 21.65 0.24 -57.47 16 21 Si 0.97 45.71 29.59 68.60 2.03 47.73 16 22 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 C 0.18 8.92 4.81 86.22 0.41 9.34 16 26 C -0.11 -3.96 4.57 30.53 0.14 -3.82 16 27 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 28 H 0.05 0.86 7.93 -2.39 -0.02 0.84 16 29 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.06 1.55 8.05 -2.38 -0.02 1.53 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.42 10.95 4.60 -92.70 -0.43 10.52 16 33 H 0.04 1.66 4.99 -2.39 -0.01 1.65 16 34 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.10 0.86 8.14 -2.38 -0.02 0.85 16 38 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 39 H 0.05 0.52 8.14 -2.38 -0.02 0.51 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.01 0.30 6.69 -2.39 -0.02 0.28 16 43 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H 0.05 2.67 6.05 -2.39 -0.01 2.65 16 46 H -0.01 -0.79 6.70 -2.39 -0.02 -0.81 16 47 H 0.07 2.20 6.50 -2.38 -0.02 2.18 16 48 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -75.16 372.29 4.21 -70.95 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.52 Total: 19.66 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.96 Total: 13.64 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -4.00 Total: -113.23 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -1.05 Total: -33.06 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.75 Total: -5.70 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -75.16 4.21 -70.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414042.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.910 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds