Wall clock time and date at job start Tue Mar 31 2020 10:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.52991 * 109.47401 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47271 * 180.02562 * 10 9 7 12 12 F 1.39905 * 109.47547 * 180.02562 * 11 10 9 13 13 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 14 14 C 1.53196 * 109.31301 * 178.62714 * 13 4 3 15 15 N 1.46919 * 108.77357 * 54.63738 * 14 13 4 16 16 C 1.36935 * 120.62952 * 126.36714 * 15 14 13 17 17 H 1.07992 * 120.00276 * 332.45452 * 16 15 14 18 18 C 1.38815 * 120.00026 * 152.17450 * 16 15 14 19 19 N 1.31620 * 119.99785 * 343.17001 * 18 16 15 20 20 Si 1.86799 * 120.00242 * 163.17219 * 18 16 15 21 21 H 1.48499 * 109.47051 * 59.99668 * 20 18 16 22 22 H 1.48497 * 109.47273 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46803 * 299.99780 * 20 18 16 24 24 C 1.46930 * 118.74055 * 306.64082 * 15 14 13 25 25 C 1.52762 * 109.00426 * 53.31040 * 24 15 14 26 26 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 27 27 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 30 30 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 31 31 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 33 33 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 34 34 H 1.08993 * 109.46689 * 300.00220 * 9 7 6 35 35 H 1.09001 * 109.47144 * 59.99273 * 9 7 6 36 36 H 1.08997 * 109.47277 * 299.99650 * 10 9 7 37 37 H 1.08998 * 109.47563 * 60.00134 * 10 9 7 38 38 H 1.09000 * 109.47158 * 299.99988 * 11 10 9 39 39 H 1.09001 * 109.47240 * 59.99627 * 11 10 9 40 40 H 1.09005 * 109.49382 * 58.67827 * 13 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 13 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 14 13 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 14 13 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.58738 * 173.14187 * 24 15 14 46 46 H 1.08996 * 109.58558 * 293.57263 * 24 15 14 47 47 H 1.09005 * 109.56252 * 185.54994 * 25 24 15 48 48 H 1.08999 * 109.38709 * 65.51901 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3743 -1.4235 3.1727 9 6 3.0366 -3.1417 2.2628 10 6 3.4871 -3.9000 3.5128 11 6 2.8662 -5.2983 3.5125 12 9 3.2777 -5.9917 4.6559 13 6 4.1577 2.5827 0.0000 14 6 5.6842 2.4579 0.0353 15 7 6.1149 1.6053 -1.0810 16 6 7.0604 2.0436 -1.9692 17 1 7.1785 3.1010 -2.1543 18 6 7.8713 1.1291 -2.6274 19 7 7.9743 -0.1031 -2.1762 20 14 8.8162 1.6472 -4.1532 21 1 9.7363 2.7614 -3.8110 22 1 9.6015 0.4950 -4.6641 23 1 7.8612 2.0968 -5.1978 24 6 5.5073 0.2759 -1.2298 25 6 3.9868 0.4229 -1.2477 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 5.0728 0.3402 1.2515 32 1 3.6637 0.9675 2.1400 33 1 2.8100 -1.1850 0.5233 34 1 1.9500 -3.0562 2.2611 35 1 3.3597 -3.6830 1.3736 36 1 4.5738 -3.9855 3.5140 37 1 3.1643 -3.3589 4.4022 38 1 1.7795 -5.2133 3.5111 39 1 3.1894 -5.8393 2.6231 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162414253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:53 Heat of formation + Delta-G solvation = -124.670530 kcal Electronic energy + Delta-G solvation = -28304.150257 eV Core-core repulsion = 24308.773855 eV Total energy + Delta-G solvation = -3995.376403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -47.71722 -40.02573 -38.67178 -37.13810 -34.56834 -33.94952 -32.99317 -30.92507 -29.98264 -27.92162 -27.69576 -26.05846 -25.19727 -23.86213 -22.36234 -22.01417 -20.89495 -19.97038 -18.40538 -17.17873 -16.62250 -16.45622 -16.14685 -15.96090 -15.81428 -15.52651 -15.15073 -14.98026 -14.71030 -14.63264 -13.92359 -13.71818 -13.54478 -13.37833 -13.05061 -12.82995 -12.74312 -12.29871 -11.97292 -11.91656 -11.70108 -11.51449 -11.44977 -11.26128 -11.15173 -10.91204 -10.77350 -10.71964 -10.54875 -10.27016 -10.18757 -9.92192 -9.76398 -9.54696 -9.48924 -9.40628 -8.56205 -8.41712 -6.64802 -5.77244 -3.19746 2.96793 3.37511 3.38689 3.44690 3.45398 3.79508 4.50227 4.58839 4.62027 4.66958 4.87252 4.94339 5.01313 5.14949 5.18961 5.21626 5.27018 5.35454 5.41224 5.44555 5.49779 5.50817 5.55402 5.62511 5.69011 5.71421 5.87518 6.02053 6.05665 6.14529 6.23166 6.37176 6.39240 6.59818 6.62871 6.70705 6.81402 6.89390 6.98570 7.08242 7.38329 7.68896 7.80342 7.99195 8.46105 8.63066 9.22643 9.86003 10.42584 11.31060 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.003733 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.940200 B = 7498.627203 C = 8880.717393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.072 3.928 4 C -0.059 4.059 5 C 0.132 3.868 6 N -0.708 5.708 7 C 0.506 3.494 8 O -0.552 6.552 9 C -0.137 4.137 10 C -0.138 4.138 11 C 0.062 3.938 12 F -0.220 7.220 13 C -0.119 4.119 14 C 0.143 3.857 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.285 1.285 24 C 0.170 3.830 25 C -0.125 4.125 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.408 0.592 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.086 0.914 46 H 0.021 0.979 47 H 0.054 0.946 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.448 -4.015 5.539 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.004 4.004 4 C -0.060 4.060 5 C 0.008 3.992 6 N -0.364 5.364 7 C 0.292 3.708 8 O -0.431 6.431 9 C -0.178 4.178 10 C -0.176 4.176 11 C 0.007 3.993 12 F -0.201 7.201 13 C -0.159 4.159 14 C 0.017 3.983 15 N -0.314 5.314 16 C -0.384 4.384 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.045 3.955 25 C -0.164 4.164 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.250 0.750 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.692 -4.078 6.114 18.238 hybrid contribution -0.069 0.371 -1.176 1.235 sum -16.761 -3.707 4.939 17.862 Atomic orbital electron populations 1.22697 0.81435 1.02392 0.99801 1.87556 1.19249 1.28864 1.95325 1.22765 0.93954 0.83877 0.99798 1.20804 0.91370 0.97290 0.96520 1.21430 0.99501 0.82031 0.96223 1.46244 1.50171 1.14784 1.25213 1.20454 0.81407 0.86710 0.82263 1.90695 1.37958 1.77982 1.36454 1.21500 1.02001 0.94216 1.00052 1.21891 1.02951 0.94061 0.98694 1.22023 0.99866 0.92216 0.85232 1.92765 1.92472 1.81075 1.53811 1.21987 0.99346 0.93567 1.01007 1.20927 0.90563 0.95444 0.91406 1.44020 1.44621 1.14895 1.27823 1.19133 1.10415 0.92258 1.16587 0.91756 1.25034 0.97514 0.96627 1.00355 1.70031 1.40774 1.04444 1.39265 0.86386 0.79575 0.77411 0.83474 1.20919 1.21665 1.21111 1.20714 0.86369 0.86784 1.01656 1.22106 1.00891 0.98387 0.95042 0.94401 0.94172 0.89910 0.93631 0.93132 0.89840 0.92784 0.75038 0.88995 0.88661 0.89836 0.90143 0.90918 0.90678 0.92736 0.91587 0.96010 0.92574 0.93610 0.89616 0.96083 0.92715 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.51 6.73 -35.23 -0.24 -4.75 16 3 C 0.07 0.90 4.80 37.16 0.18 1.08 16 4 C -0.06 -0.91 0.51 -154.47 -0.08 -0.99 16 5 C 0.13 2.19 3.80 -4.05 -0.02 2.18 16 6 N -0.71 -10.52 4.63 -60.30 -0.28 -10.80 16 7 C 0.51 7.74 7.83 -10.99 -0.09 7.66 16 8 O -0.55 -10.77 15.98 5.56 0.09 -10.68 16 9 C -0.14 -1.42 5.70 -27.89 -0.16 -1.58 16 10 C -0.14 -1.50 4.96 -26.74 -0.13 -1.63 16 11 C 0.06 0.53 7.55 37.16 0.28 0.81 16 12 F -0.22 -2.60 17.36 2.25 0.04 -2.56 16 13 C -0.12 -1.91 4.91 -26.61 -0.13 -2.04 16 14 C 0.14 2.90 6.05 -3.71 -0.02 2.88 16 15 N -0.59 -14.40 3.00 -172.59 -0.52 -14.91 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 18 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 19 N -0.90 -26.07 11.18 55.49 0.62 -25.44 16 20 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.17 3.93 4.81 -3.93 -0.02 3.92 16 25 C -0.12 -2.24 4.57 -26.83 -0.12 -2.36 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.70 4.99 -51.93 -0.26 1.45 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.41 5.46 4.70 -40.82 -0.19 5.26 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.46 6.69 -51.93 -0.35 0.11 16 43 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.09 2.26 6.05 -51.93 -0.31 1.94 16 46 H 0.02 0.53 6.70 -51.93 -0.35 0.18 16 47 H 0.05 0.91 6.49 -51.93 -0.34 0.57 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -32.17 372.60 -7.22 -39.39 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.10 Total: 3.33 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 0.57 Total: 4.28 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.18 Total: -51.15 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.15 Total: -15.42 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.17 -7.22 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.283 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds