Wall clock time and date at job start Tue Mar 31 2020 10:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00584 * 180.02562 * 7 6 5 10 10 C 1.52991 * 109.47401 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47271 * 180.02562 * 10 9 7 12 12 F 1.39905 * 109.47547 * 180.02562 * 11 10 9 13 13 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 14 14 C 1.53196 * 109.31301 * 178.62714 * 13 4 3 15 15 N 1.46919 * 108.77357 * 54.63738 * 14 13 4 16 16 C 1.36935 * 120.62952 * 126.36714 * 15 14 13 17 17 H 1.07992 * 120.00276 * 332.45452 * 16 15 14 18 18 C 1.38815 * 120.00026 * 152.17450 * 16 15 14 19 19 N 1.31620 * 119.99785 * 343.17001 * 18 16 15 20 20 Si 1.86799 * 120.00242 * 163.17219 * 18 16 15 21 21 H 1.48499 * 109.47051 * 59.99668 * 20 18 16 22 22 H 1.48497 * 109.47273 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46803 * 299.99780 * 20 18 16 24 24 C 1.46930 * 118.74055 * 306.64082 * 15 14 13 25 25 C 1.52762 * 109.00426 * 53.31040 * 24 15 14 26 26 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 27 27 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 28 28 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 30 30 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 31 31 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 33 33 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 34 34 H 1.08993 * 109.46689 * 300.00220 * 9 7 6 35 35 H 1.09001 * 109.47144 * 59.99273 * 9 7 6 36 36 H 1.08997 * 109.47277 * 299.99650 * 10 9 7 37 37 H 1.08998 * 109.47563 * 60.00134 * 10 9 7 38 38 H 1.09000 * 109.47158 * 299.99988 * 11 10 9 39 39 H 1.09001 * 109.47240 * 59.99627 * 11 10 9 40 40 H 1.09005 * 109.49382 * 58.67827 * 13 4 3 41 41 H 1.08991 * 109.52573 * 298.59920 * 13 4 3 42 42 H 1.09000 * 109.58299 * 294.85003 * 14 13 4 43 43 H 1.08994 * 109.70288 * 174.49711 * 14 13 4 44 44 H 0.97003 * 120.00199 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.58738 * 173.14187 * 24 15 14 46 46 H 1.08996 * 109.58558 * 293.57263 * 24 15 14 47 47 H 1.09005 * 109.56252 * 185.54994 * 25 24 15 48 48 H 1.08999 * 109.38709 * 65.51901 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3743 -1.4235 3.1727 9 6 3.0366 -3.1417 2.2628 10 6 3.4871 -3.9000 3.5128 11 6 2.8662 -5.2983 3.5125 12 9 3.2777 -5.9917 4.6559 13 6 4.1577 2.5827 0.0000 14 6 5.6842 2.4579 0.0353 15 7 6.1149 1.6053 -1.0810 16 6 7.0604 2.0436 -1.9692 17 1 7.1785 3.1010 -2.1543 18 6 7.8713 1.1291 -2.6274 19 7 7.9743 -0.1031 -2.1762 20 14 8.8162 1.6472 -4.1532 21 1 9.7363 2.7614 -3.8110 22 1 9.6015 0.4950 -4.6641 23 1 7.8612 2.0968 -5.1978 24 6 5.5073 0.2759 -1.2298 25 6 3.9868 0.4229 -1.2477 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6887 1.8463 -0.8901 31 1 5.0728 0.3402 1.2515 32 1 3.6637 0.9675 2.1400 33 1 2.8100 -1.1850 0.5233 34 1 1.9500 -3.0562 2.2611 35 1 3.3597 -3.6830 1.3736 36 1 4.5738 -3.9855 3.5140 37 1 3.1643 -3.3589 4.4022 38 1 1.7795 -5.2133 3.5111 39 1 3.1894 -5.8393 2.6231 40 1 3.8173 3.1328 0.8773 41 1 3.8570 3.1149 -0.9023 42 1 5.9922 2.0077 0.9790 43 1 6.1360 3.4449 -0.0633 44 1 8.5406 -0.7423 -2.6363 45 1 5.8403 -0.1756 -2.1644 46 1 5.8007 -0.3559 -0.3915 47 1 3.5248 -0.5643 -1.2585 48 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162414253.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:52 Heat of formation + Delta-G solvation = -145.683706 kcal Electronic energy + Delta-G solvation = -28305.061457 eV Core-core repulsion = 24308.773855 eV Total energy + Delta-G solvation = -3996.287602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.52919 -41.30603 -39.93425 -38.26089 -36.09070 -34.91243 -34.53135 -32.68506 -31.63112 -29.07347 -28.80453 -27.16685 -26.29972 -25.46776 -23.90066 -22.94912 -22.49551 -21.17787 -19.87351 -18.73327 -17.83255 -17.43573 -17.09480 -17.00110 -16.91860 -16.77043 -16.40374 -16.15006 -15.99229 -15.62124 -15.31942 -15.29532 -15.04916 -14.69286 -14.38304 -14.18881 -14.01276 -13.64169 -13.31027 -13.04706 -12.94731 -12.84744 -12.62399 -12.53819 -12.35306 -12.29841 -12.27168 -12.00751 -11.96001 -11.82359 -11.52234 -11.43956 -11.21385 -11.10221 -10.79141 -10.53345 -10.45622 -9.85445 -8.64819 -7.85721 -5.31203 1.46875 1.48691 1.55792 1.77238 2.30027 2.52117 2.88286 3.28790 3.67826 3.70296 3.75610 3.79899 3.91026 3.97652 4.00734 4.21245 4.28910 4.36582 4.45049 4.48682 4.53166 4.56688 4.64808 4.68092 4.69722 4.72687 4.74392 4.83347 4.89006 4.93236 4.98325 5.03513 5.04869 5.18210 5.25537 5.29295 5.29722 5.37817 5.50510 5.64834 5.70354 5.80807 6.28593 6.40105 6.81477 7.16621 7.46214 7.88540 8.39918 9.20182 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.003733 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.940200 B = 7498.627203 C = 8880.717393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.406 6.406 3 C 0.083 3.917 4 C -0.052 4.052 5 C 0.140 3.860 6 N -0.700 5.700 7 C 0.496 3.504 8 O -0.603 6.603 9 C -0.126 4.126 10 C -0.136 4.136 11 C 0.062 3.938 12 F -0.240 7.240 13 C -0.109 4.109 14 C 0.138 3.862 15 N -0.609 5.609 16 C -0.263 4.263 17 H 0.068 0.932 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.275 1.275 24 C 0.182 3.818 25 C -0.108 4.108 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.418 0.582 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.006 0.994 43 H 0.056 0.944 44 H 0.248 0.752 45 H 0.048 0.952 46 H -0.011 1.011 47 H 0.069 0.931 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.795 -3.728 4.777 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.006 3.994 4 C -0.053 4.053 5 C 0.015 3.985 6 N -0.356 5.356 7 C 0.284 3.716 8 O -0.486 6.486 9 C -0.166 4.166 10 C -0.175 4.175 11 C 0.008 3.992 12 F -0.221 7.221 13 C -0.148 4.148 14 C 0.012 3.988 15 N -0.333 5.333 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.247 4.247 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.201 1.201 24 C 0.057 3.943 25 C -0.147 4.147 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.261 0.739 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.024 0.976 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.007 0.993 47 H 0.088 0.912 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.090 -3.775 5.341 21.128 hybrid contribution 0.995 0.296 -0.870 1.355 sum -19.095 -3.478 4.470 19.917 Atomic orbital electron populations 1.22908 0.79282 1.03981 1.00533 1.87492 1.21390 1.28182 1.95502 1.22531 0.90869 0.84763 1.01228 1.20692 0.94283 0.96124 0.94177 1.21178 0.96802 0.83410 0.97093 1.46211 1.49821 1.14138 1.25454 1.21421 0.80591 0.88357 0.81272 1.90673 1.40255 1.79234 1.38404 1.21525 1.03908 0.90699 1.00429 1.21835 1.01300 0.95801 0.98521 1.22202 1.01559 0.90412 0.85070 1.92726 1.92843 1.81393 1.55183 1.21844 0.95563 0.94526 1.02866 1.21072 0.93951 0.94365 0.89371 1.44299 1.44637 1.15573 1.28744 1.19516 1.10524 0.92526 1.16806 0.91434 1.25806 0.98936 0.96715 1.03209 1.70212 1.41932 1.05526 1.40544 0.85348 0.78304 0.76761 0.80062 1.20294 1.22244 1.20133 1.20440 0.89902 0.85782 0.98209 1.21854 0.96578 0.99790 0.96524 0.93608 0.93460 0.88008 0.91974 0.91892 0.94607 0.92455 0.73855 0.85051 0.86606 0.92859 0.91641 0.87655 0.88624 0.89507 0.90856 0.97567 0.92581 0.94281 0.93372 0.99339 0.91250 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.84 6.73 -148.98 -1.00 -8.85 16 3 C 0.08 1.75 4.80 71.98 0.35 2.09 16 4 C -0.05 -1.53 0.51 -52.16 -0.03 -1.55 16 5 C 0.14 4.65 3.80 86.38 0.33 4.98 16 6 N -0.70 -20.20 4.63 -463.07 -2.14 -22.34 16 7 C 0.50 15.03 7.83 87.66 0.69 15.72 16 8 O -0.60 -24.45 15.98 -3.03 -0.05 -24.50 16 9 C -0.13 -2.34 5.70 29.84 0.17 -2.17 16 10 C -0.14 -2.86 4.96 30.59 0.15 -2.71 16 11 C 0.06 0.93 7.55 71.98 0.54 1.47 16 12 F -0.24 -5.43 17.36 44.97 0.78 -4.65 16 13 C -0.11 -3.30 4.91 30.67 0.15 -3.15 16 14 C 0.14 5.68 6.05 86.37 0.52 6.20 16 15 N -0.61 -30.60 3.00 -699.95 -2.10 -32.70 16 16 C -0.26 -14.57 9.58 84.03 0.81 -13.77 16 17 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 18 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 19 N -0.94 -56.54 11.18 21.65 0.24 -56.30 16 20 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 C 0.18 8.77 4.81 86.22 0.41 9.18 16 25 C -0.11 -3.82 4.57 30.53 0.14 -3.68 16 26 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.04 1.55 4.99 -2.38 -0.01 1.53 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.42 10.27 4.70 -92.71 -0.44 9.83 16 34 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 38 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.01 0.28 6.69 -2.39 -0.02 0.27 16 43 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.05 2.66 6.05 -2.39 -0.01 2.64 16 46 H -0.01 -0.61 6.70 -2.39 -0.02 -0.63 16 47 H 0.07 2.22 6.49 -2.38 -0.02 2.20 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -75.54 372.60 4.17 -71.38 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.51 Total: 19.01 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.90 Total: 11.73 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.00 Total: -111.33 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.05 Total: -33.35 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.54 4.17 -71.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162414253.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.307 kcal (2) G-P(sol) polarization free energy of solvation -75.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds