Wall clock time and date at job start Tue Mar 31 2020 11:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47206 * 270.00650 * 3 2 1 5 5 H 1.48496 * 109.47252 * 30.00254 * 3 2 1 6 6 H 1.48497 * 109.47056 * 150.00587 * 3 2 1 7 7 C 1.37870 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00038 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.46961 * 110.99970 * 66.17854 * 10 9 7 12 12 C 1.53054 * 109.36726 * 183.16811 * 11 10 9 13 13 N 1.46953 * 109.37830 * 301.63336 * 12 11 10 14 14 C 1.39034 * 110.99784 * 183.17698 * 13 12 11 15 15 C 1.38828 * 119.66728 * 179.72087 * 14 13 12 16 16 C 1.39124 * 119.00631 * 179.79141 * 15 14 13 17 17 N 1.39192 * 120.82607 * 180.23986 * 16 15 14 18 18 C 1.48540 * 111.00002 * 116.89680 * 17 16 15 19 19 C 1.54934 * 103.22847 * 159.72555 * 18 17 16 20 20 C 1.54596 * 102.91994 * 322.58525 * 19 18 17 21 21 C 1.47900 * 111.00751 * 234.29278 * 17 16 15 22 22 C 1.39691 * 118.35021 * 0.47743 * 16 15 14 23 23 C 1.37728 * 119.23851 * 359.74573 * 22 16 15 24 24 N 1.32091 * 120.93270 * 0.02562 * 23 22 16 25 25 C 1.46950 * 110.88543 * 59.30573 * 13 12 11 26 26 C 1.46958 * 111.00223 * 189.99850 * 10 9 7 27 27 H 0.97003 * 120.00129 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47509 * 60.00424 * 9 7 2 29 29 H 1.09005 * 109.47362 * 300.00023 * 9 7 2 30 30 H 1.08997 * 109.47100 * 63.20915 * 11 10 9 31 31 H 1.08999 * 109.50582 * 303.14641 * 11 10 9 32 32 H 1.09000 * 109.48998 * 181.65213 * 12 11 10 33 33 H 1.08997 * 109.48603 * 61.60441 * 12 11 10 34 34 H 1.08002 * 120.49364 * 0.02562 * 15 14 13 35 35 H 1.08998 * 110.66496 * 278.15844 * 18 17 16 36 36 H 1.08993 * 110.66383 * 41.28539 * 18 17 16 37 37 H 1.08998 * 110.72547 * 204.23167 * 19 18 17 38 38 H 1.08994 * 110.72549 * 80.94333 * 19 18 17 39 39 H 1.09000 * 110.31036 * 263.04118 * 20 19 18 40 40 H 1.08999 * 110.31022 * 140.87643 * 20 19 18 41 41 H 1.09001 * 109.91260 * 333.51562 * 21 17 16 42 42 H 1.09005 * 109.91892 * 94.79947 * 21 17 16 43 43 H 1.08005 * 120.38057 * 179.76649 * 22 16 15 44 44 H 1.07995 * 119.53658 * 179.97438 * 23 22 16 45 45 H 1.09008 * 109.48924 * 60.64660 * 25 13 12 46 46 H 1.08997 * 109.49111 * 180.68732 * 25 13 12 47 47 H 1.09000 * 109.48818 * 56.84537 * 26 10 9 48 48 H 1.09007 * 109.48891 * 296.77870 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9691 -3.6558 1.2546 12 6 4.0043 -4.7809 1.1832 13 7 3.3196 -6.0591 0.9449 14 6 4.2231 -7.1159 0.9449 15 6 3.7660 -8.4108 0.7412 16 6 4.6826 -9.4574 0.7396 17 7 4.2665 -10.7697 0.5341 18 6 4.8589 -11.3275 -0.7086 19 6 4.7412 -12.8584 -0.5012 20 6 5.0278 -13.0258 1.0087 21 6 4.7264 -11.6496 1.6303 22 6 6.0303 -9.1592 0.9544 23 6 6.4059 -7.8492 1.1539 24 7 5.5113 -6.8774 1.1449 25 6 2.5566 -6.0187 -0.3103 26 6 1.5210 -4.8940 -0.2387 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.2900 -3.8388 2.0872 31 1 3.4773 -2.7029 1.4021 32 1 4.5519 -4.8315 2.1243 33 1 4.7001 -4.5836 0.3677 34 1 2.7150 -8.6024 0.5826 35 1 4.2880 -11.0126 -1.5820 36 1 5.9036 -11.0313 -0.8032 37 1 5.4862 -13.3867 -1.0961 38 1 3.7364 -13.2043 -0.7438 39 1 6.0726 -13.2924 1.1682 40 1 4.3733 -13.7855 1.4361 41 1 5.6302 -11.2397 2.0810 42 1 3.9437 -11.7454 2.3828 43 1 6.7693 -9.9468 0.9636 44 1 7.4465 -7.6133 1.3208 45 1 3.2357 -5.8352 -1.1430 46 1 2.0490 -6.9718 -0.4582 47 1 0.9735 -4.8433 -1.1798 48 1 0.8255 -5.0915 0.5770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165054970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:15 Heat of formation + Delta-G solvation = 71.477046 kcal Electronic energy + Delta-G solvation = -26279.811024 eV Core-core repulsion = 22756.002194 eV Total energy + Delta-G solvation = -3523.808830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02921 -39.45768 -37.96781 -35.13480 -33.51736 -32.51897 -30.78026 -30.34936 -29.42553 -29.30957 -27.61609 -25.20264 -23.97324 -23.13673 -22.36124 -21.62760 -21.34628 -20.68970 -19.24044 -17.86322 -16.95850 -16.30597 -16.23903 -15.75273 -15.64808 -14.95406 -14.73011 -14.43471 -14.30909 -14.25354 -13.81698 -13.75476 -13.51532 -13.32268 -13.02345 -12.72929 -12.57337 -12.19929 -12.02342 -11.83460 -11.77913 -11.62599 -11.24978 -11.03382 -10.89919 -10.76645 -10.72407 -10.48996 -10.34659 -9.87945 -9.74086 -9.57650 -9.49545 -9.17046 -8.96470 -8.42255 -8.01529 -7.25542 -6.01570 -4.02939 1.04895 1.13281 3.33333 3.33833 3.39466 3.43307 3.55818 3.88780 4.19269 4.36033 4.43451 4.45486 4.56886 4.84308 4.86183 4.87459 4.92567 5.04740 5.09988 5.22168 5.32309 5.33992 5.34298 5.38850 5.44873 5.51622 5.53578 5.58645 5.68572 5.70827 5.72912 5.80205 5.95745 6.03811 6.07919 6.18951 6.21012 6.31061 6.35222 6.62506 6.69386 6.88067 6.99043 7.27757 7.32047 7.36059 7.80396 8.02677 8.08105 8.19104 8.54445 9.04528 9.61317 11.09292 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.034483 B = 0.002372 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.799124 B =11801.581992 C =12270.644791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.063 3.937 12 C 0.072 3.928 13 N -0.477 5.477 14 C 0.331 3.669 15 C -0.166 4.166 16 C 0.146 3.854 17 N -0.484 5.484 18 C 0.039 3.961 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.037 3.963 22 C -0.245 4.245 23 C 0.137 3.863 24 N -0.522 5.522 25 C 0.067 3.933 26 C 0.055 3.945 27 H 0.261 0.739 28 H 0.031 0.969 29 H -0.007 1.007 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.141 0.859 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.126 0.874 44 H 0.153 0.847 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -26.223 1.036 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.066 4.066 12 C -0.055 4.055 13 N -0.194 5.194 14 C 0.098 3.902 15 C -0.189 4.189 16 C 0.043 3.957 17 N -0.206 5.206 18 C -0.087 4.087 19 C -0.161 4.161 20 C -0.169 4.169 21 C -0.089 4.089 22 C -0.269 4.269 23 C -0.021 4.021 24 N -0.237 5.237 25 C -0.059 4.059 26 C -0.074 4.074 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.010 0.990 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.170 0.830 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.666 -25.153 1.130 27.344 hybrid contribution 0.893 0.051 0.168 0.910 sum 11.559 -25.102 1.298 27.665 Atomic orbital electron populations 1.69959 1.06055 1.26768 1.51028 1.24990 0.94871 0.99325 0.95455 0.86494 0.79711 0.83078 0.78100 1.20662 1.21348 1.19831 1.21150 0.93493 0.89911 1.50030 0.91858 1.19709 0.90000 0.87208 0.96198 1.62312 1.28146 1.02638 1.33346 1.22112 0.95477 0.97799 0.91212 1.22169 0.95629 0.85656 1.02031 1.59286 1.22808 1.03992 1.33331 1.19918 0.87780 0.90943 0.91524 1.21382 1.01040 0.90477 1.06050 1.19025 0.91223 0.90489 0.94967 1.62264 1.55726 0.99220 1.03369 1.23352 0.98314 0.94418 0.92570 1.22498 1.02680 0.95038 0.95911 1.22419 1.01796 0.96875 0.95847 1.23014 0.99966 0.92044 0.93916 1.22356 0.96790 0.98738 1.08971 1.22338 0.98620 0.87928 0.93170 1.67744 1.01357 1.36702 1.17871 1.22363 0.96048 0.99719 0.87749 1.22099 0.94422 0.89777 1.01101 0.92933 0.95130 0.98959 0.95257 0.88981 0.90099 0.92547 0.84140 0.89515 0.92942 0.90696 0.90387 0.91291 0.90650 0.92770 0.89848 0.85563 0.82979 0.92947 0.90230 0.90276 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.28 8.47 -34.44 -0.29 -14.57 16 8 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 9 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 10 N -0.54 -11.80 4.70 -235.91 -1.11 -12.91 16 11 C 0.06 1.27 5.43 -3.76 -0.02 1.25 16 12 C 0.07 1.26 4.78 -3.77 -0.02 1.24 16 13 N -0.48 -7.76 4.73 -173.10 -0.82 -8.58 16 14 C 0.33 4.95 6.40 -155.00 -0.99 3.96 16 15 C -0.17 -2.17 9.16 -39.03 -0.36 -2.53 16 16 C 0.15 1.65 4.87 -83.65 -0.41 1.24 16 17 N -0.48 -4.68 5.29 -167.00 -0.88 -5.56 16 18 C 0.04 0.31 6.44 -1.90 -0.01 0.29 16 19 C -0.12 -0.72 7.06 -24.87 -0.18 -0.89 16 20 C -0.13 -0.75 6.93 -25.38 -0.18 -0.93 16 21 C 0.04 0.29 6.50 -2.76 -0.02 0.27 16 22 C -0.25 -2.53 8.00 -39.23 -0.31 -2.84 16 23 C 0.14 1.59 11.16 -17.63 -0.20 1.39 16 24 N -0.52 -7.68 8.70 -12.53 -0.11 -7.78 16 25 C 0.07 1.04 5.37 -3.77 -0.02 1.02 16 26 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.97 6.79 -51.93 -0.35 1.62 16 32 H 0.08 1.36 7.82 -51.93 -0.41 0.96 16 33 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 34 H 0.14 1.77 7.18 -52.49 -0.38 1.40 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.40 7.10 -51.93 -0.37 0.03 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.05 0.42 6.34 -51.93 -0.33 0.09 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.13 1.02 7.17 -52.48 -0.38 0.65 16 44 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 45 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 46 H 0.08 1.04 6.80 -51.93 -0.35 0.69 16 47 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -31.07 372.16 -12.71 -43.78 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.98 Total: -1.64 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.14 Total: -3.60 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -2.18 Total: -60.89 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.07 -12.71 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165054970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.256 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds