Wall clock time and date at job start Tue Mar 31 2020 11:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99739 * 2 1 4 4 H 1.48504 * 109.47206 * 270.00650 * 3 2 1 5 5 H 1.48496 * 109.47252 * 30.00254 * 3 2 1 6 6 H 1.48497 * 109.47056 * 150.00587 * 3 2 1 7 7 C 1.37870 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99857 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00038 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.46961 * 110.99970 * 66.17854 * 10 9 7 12 12 C 1.53054 * 109.36726 * 183.16811 * 11 10 9 13 13 N 1.46953 * 109.37830 * 301.63336 * 12 11 10 14 14 C 1.39034 * 110.99784 * 183.17698 * 13 12 11 15 15 C 1.38828 * 119.66728 * 179.72087 * 14 13 12 16 16 C 1.39124 * 119.00631 * 179.79141 * 15 14 13 17 17 N 1.39192 * 120.82607 * 180.23986 * 16 15 14 18 18 C 1.48540 * 111.00002 * 116.89680 * 17 16 15 19 19 C 1.54934 * 103.22847 * 159.72555 * 18 17 16 20 20 C 1.54596 * 102.91994 * 322.58525 * 19 18 17 21 21 C 1.47900 * 111.00751 * 234.29278 * 17 16 15 22 22 C 1.39691 * 118.35021 * 0.47743 * 16 15 14 23 23 C 1.37728 * 119.23851 * 359.74573 * 22 16 15 24 24 N 1.32091 * 120.93270 * 0.02562 * 23 22 16 25 25 C 1.46950 * 110.88543 * 59.30573 * 13 12 11 26 26 C 1.46958 * 111.00223 * 189.99850 * 10 9 7 27 27 H 0.97003 * 120.00129 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47509 * 60.00424 * 9 7 2 29 29 H 1.09005 * 109.47362 * 300.00023 * 9 7 2 30 30 H 1.08997 * 109.47100 * 63.20915 * 11 10 9 31 31 H 1.08999 * 109.50582 * 303.14641 * 11 10 9 32 32 H 1.09000 * 109.48998 * 181.65213 * 12 11 10 33 33 H 1.08997 * 109.48603 * 61.60441 * 12 11 10 34 34 H 1.08002 * 120.49364 * 0.02562 * 15 14 13 35 35 H 1.08998 * 110.66496 * 278.15844 * 18 17 16 36 36 H 1.08993 * 110.66383 * 41.28539 * 18 17 16 37 37 H 1.08998 * 110.72547 * 204.23167 * 19 18 17 38 38 H 1.08994 * 110.72549 * 80.94333 * 19 18 17 39 39 H 1.09000 * 110.31036 * 263.04118 * 20 19 18 40 40 H 1.08999 * 110.31022 * 140.87643 * 20 19 18 41 41 H 1.09001 * 109.91260 * 333.51562 * 21 17 16 42 42 H 1.09005 * 109.91892 * 94.79947 * 21 17 16 43 43 H 1.08005 * 120.38057 * 179.76649 * 22 16 15 44 44 H 1.07995 * 119.53658 * 179.97438 * 23 22 16 45 45 H 1.09008 * 109.48924 * 60.64660 * 25 13 12 46 46 H 1.08997 * 109.49111 * 180.68732 * 25 13 12 47 47 H 1.09000 * 109.48818 * 56.84537 * 26 10 9 48 48 H 1.09007 * 109.48891 * 296.77870 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 2.9691 -3.6558 1.2546 12 6 4.0043 -4.7809 1.1832 13 7 3.3196 -6.0591 0.9449 14 6 4.2231 -7.1159 0.9449 15 6 3.7660 -8.4108 0.7412 16 6 4.6826 -9.4574 0.7396 17 7 4.2665 -10.7697 0.5341 18 6 4.8589 -11.3275 -0.7086 19 6 4.7412 -12.8584 -0.5012 20 6 5.0278 -13.0258 1.0087 21 6 4.7264 -11.6496 1.6303 22 6 6.0303 -9.1592 0.9544 23 6 6.4059 -7.8492 1.1539 24 7 5.5113 -6.8774 1.1449 25 6 2.5566 -6.0187 -0.3103 26 6 1.5210 -4.8940 -0.2387 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.2900 -3.8388 2.0872 31 1 3.4773 -2.7029 1.4021 32 1 4.5519 -4.8315 2.1243 33 1 4.7001 -4.5836 0.3677 34 1 2.7150 -8.6024 0.5826 35 1 4.2880 -11.0126 -1.5820 36 1 5.9036 -11.0313 -0.8032 37 1 5.4862 -13.3867 -1.0961 38 1 3.7364 -13.2043 -0.7438 39 1 6.0726 -13.2924 1.1682 40 1 4.3733 -13.7855 1.4361 41 1 5.6302 -11.2397 2.0810 42 1 3.9437 -11.7454 2.3828 43 1 6.7693 -9.9468 0.9636 44 1 7.4465 -7.6133 1.3208 45 1 3.2357 -5.8352 -1.1430 46 1 2.0490 -6.9718 -0.4582 47 1 0.9735 -4.8433 -1.1798 48 1 0.8255 -5.0915 0.5770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165054970.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:14 Heat of formation + Delta-G solvation = 51.025253 kcal Electronic energy + Delta-G solvation = -26280.697880 eV Core-core repulsion = 22756.002194 eV Total energy + Delta-G solvation = -3524.695686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98778 -40.46894 -39.12369 -36.64119 -34.63748 -34.23812 -32.14116 -31.62823 -30.25505 -29.87115 -29.35511 -26.90585 -25.15254 -24.23510 -23.55632 -23.28670 -21.89989 -21.64106 -20.67405 -18.80655 -18.49815 -17.83369 -17.26674 -16.80854 -16.48856 -16.43556 -16.02596 -15.88988 -15.55453 -15.33890 -15.15829 -14.99066 -14.85623 -14.43576 -14.04657 -13.76421 -13.62955 -13.34683 -13.27097 -13.10180 -12.94935 -12.73601 -12.53741 -12.34376 -12.27269 -12.19323 -12.13741 -12.10832 -11.63462 -11.47210 -11.27627 -10.91331 -10.62415 -10.52101 -10.47145 -9.65593 -9.16135 -9.07320 -8.20989 -6.31110 0.10349 0.20853 1.41242 1.42720 1.53956 2.34801 2.40271 2.70080 2.91598 3.10934 3.23037 3.49477 3.65029 3.85796 3.86576 4.00961 4.01628 4.09302 4.11650 4.16879 4.24490 4.29916 4.31372 4.40118 4.52809 4.56180 4.63208 4.74566 4.78872 4.81003 4.86240 4.87250 4.93966 4.97082 4.99016 5.03520 5.10851 5.18671 5.22234 5.24422 5.29466 5.33981 5.62109 5.64672 5.72848 6.02284 6.10080 6.23089 6.28424 6.57458 6.83969 7.03388 7.38427 8.90189 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.034483 B = 0.002372 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.799124 B =11801.581992 C =12270.644791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.546 5.546 11 C 0.068 3.932 12 C 0.092 3.908 13 N -0.486 5.486 14 C 0.310 3.690 15 C -0.174 4.174 16 C 0.149 3.851 17 N -0.499 5.499 18 C 0.036 3.964 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.033 3.967 22 C -0.229 4.229 23 C 0.130 3.870 24 N -0.548 5.548 25 C 0.079 3.921 26 C 0.054 3.946 27 H 0.265 0.735 28 H 0.009 0.991 29 H -0.037 1.037 30 H 0.019 0.981 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.181 0.819 45 H 0.046 0.954 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.454 -28.298 0.895 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.083 3.917 10 N -0.271 5.271 11 C -0.061 4.061 12 C -0.035 4.035 13 N -0.204 5.204 14 C 0.079 3.921 15 C -0.197 4.197 16 C 0.046 3.954 17 N -0.221 5.221 18 C -0.089 4.089 19 C -0.156 4.156 20 C -0.164 4.164 21 C -0.093 4.093 22 C -0.252 4.252 23 C -0.027 4.027 24 N -0.264 5.264 25 C -0.047 4.047 26 C -0.074 4.074 27 H 0.074 0.926 28 H 0.027 0.973 29 H -0.020 1.020 30 H 0.037 0.963 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.172 0.828 44 H 0.197 0.803 45 H 0.065 0.935 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 12.931 -27.273 0.987 30.200 hybrid contribution 0.226 0.533 0.213 0.617 sum 13.157 -26.740 1.201 29.826 Atomic orbital electron populations 1.70084 1.07694 1.27930 1.51689 1.25917 0.95776 1.03204 0.94771 0.85369 0.78521 0.78190 0.78454 1.19816 1.20722 1.18891 1.21437 0.93582 0.91035 1.50163 0.91971 1.19358 0.89985 0.88697 0.93633 1.62232 1.27443 1.03186 1.34230 1.22036 0.95574 0.98365 0.90096 1.21843 0.94222 0.85560 1.01923 1.59297 1.23595 1.03664 1.33808 1.19860 0.87960 0.90835 0.93489 1.21410 1.01472 0.90313 1.06549 1.19177 0.91381 0.91011 0.93843 1.62267 1.56468 0.98689 1.04655 1.23431 0.98281 0.95713 0.91504 1.22498 1.03194 0.93619 0.96293 1.22418 1.02885 0.95642 0.95441 1.23089 0.99778 0.92941 0.93456 1.22631 0.96904 0.98978 1.06693 1.22844 0.99334 0.87988 0.92554 1.67689 1.01633 1.38355 1.18674 1.22261 0.95228 0.99630 0.87590 1.22183 0.95214 0.88929 1.01099 0.92647 0.97339 1.01977 0.96293 0.90695 0.89488 0.93567 0.84175 0.90098 0.92454 0.88922 0.90646 0.89841 0.89939 0.92544 0.90495 0.82759 0.80255 0.93546 0.87397 0.89709 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.44 0.28 -56.66 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.52 -30.34 8.47 25.60 0.22 -30.12 16 8 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 9 C 0.21 11.49 4.72 85.56 0.40 11.90 16 10 N -0.55 -24.79 4.70 -900.27 -4.23 -29.02 16 11 C 0.07 2.85 5.43 86.31 0.47 3.32 16 12 C 0.09 3.26 4.78 86.31 0.41 3.67 16 13 N -0.49 -15.80 4.73 -701.57 -3.32 -19.12 16 14 C 0.31 9.05 6.40 132.94 0.85 9.90 16 15 C -0.17 -4.37 9.16 22.62 0.21 -4.16 16 16 C 0.15 3.08 4.87 38.54 0.19 3.26 16 17 N -0.50 -8.58 5.29 -682.28 -3.61 -12.19 16 18 C 0.04 0.47 6.44 86.65 0.56 1.03 16 19 C -0.12 -1.03 7.06 31.80 0.22 -0.81 16 20 C -0.13 -1.05 6.93 31.47 0.22 -0.83 16 21 C 0.03 0.44 6.50 86.44 0.56 1.01 16 22 C -0.23 -4.06 8.00 22.50 0.18 -3.88 16 23 C 0.13 2.71 11.16 84.53 0.94 3.65 16 24 N -0.55 -15.52 8.70 -193.55 -1.68 -17.20 16 25 C 0.08 2.43 5.37 86.31 0.46 2.89 16 26 C 0.05 2.02 5.61 86.31 0.48 2.51 16 27 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 28 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 29 H -0.04 -2.24 8.12 -2.38 -0.02 -2.26 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 3.35 6.79 -2.39 -0.02 3.34 16 32 H 0.09 2.96 7.82 -2.39 -0.02 2.94 16 33 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 34 H 0.14 3.42 7.18 -2.91 -0.02 3.40 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 0.69 7.10 -2.39 -0.02 0.68 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.71 6.34 -2.39 -0.02 0.70 16 42 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.15 1.86 7.17 -2.91 -0.02 1.84 16 44 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.11 2.71 6.80 -2.39 -0.02 2.70 16 47 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 48 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -68.41 372.16 -2.76 -71.17 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.93 Total: 12.11 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.84 Total: 3.88 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -12.56 Total: -134.19 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -68.41 -2.76 -71.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165054970.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.191 kcal (2) G-P(sol) polarization free energy of solvation -68.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds