Wall clock time and date at job start Tue Mar 31 2020 11:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.64251 * 2 1 4 4 C 1.53315 * 109.64393 * 239.57648 * 2 1 3 5 5 C 1.52773 * 108.53169 * 170.18378 * 4 2 1 6 6 C 1.50590 * 110.29553 * 51.42896 * 5 4 2 7 7 N 1.32516 * 118.22098 * 162.17529 * 6 5 4 8 8 N 1.28099 * 122.68581 * 179.76703 * 7 6 5 9 9 C 1.32526 * 122.03541 * 359.97438 * 8 7 6 10 10 N 1.39054 * 120.29118 * 180.13050 * 9 8 7 11 11 C 1.46958 * 111.00427 * 123.79660 * 10 9 8 12 12 C 1.53045 * 109.36507 * 176.80909 * 11 10 9 13 13 N 1.46961 * 109.36576 * 58.39749 * 12 11 10 14 14 C 1.46901 * 110.99943 * 176.80806 * 13 12 11 15 15 C 1.50690 * 109.47483 * 293.80393 * 14 13 12 16 16 H 1.08007 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00041 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00144 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47030 * 90.00047 * 19 17 15 21 21 H 1.48499 * 109.47097 * 210.00129 * 19 17 15 22 22 H 1.48496 * 109.46726 * 329.99939 * 19 17 15 23 23 C 1.46951 * 110.87975 * 300.67840 * 13 12 11 24 24 C 1.46954 * 110.99841 * 359.97438 * 10 9 8 25 25 C 1.38517 * 119.36792 * 359.75861 * 9 8 7 26 26 C 1.37739 * 122.49931 * 341.91471 * 6 5 4 27 27 C 1.50288 * 122.91070 * 0.73892 * 26 6 5 28 28 H 1.08995 * 109.47499 * 180.42020 * 1 2 3 29 29 H 1.09000 * 109.46567 * 300.42343 * 1 2 3 30 30 H 1.08998 * 109.46613 * 60.41727 * 1 2 3 31 31 H 1.09003 * 109.62205 * 50.47062 * 4 2 1 32 32 H 1.09000 * 109.78559 * 289.99510 * 4 2 1 33 33 H 1.09002 * 109.30731 * 171.63167 * 5 4 2 34 34 H 1.09001 * 109.30341 * 291.22474 * 5 4 2 35 35 H 1.09008 * 109.48416 * 296.77497 * 11 10 9 36 36 H 1.08991 * 109.48835 * 56.83532 * 11 10 9 37 37 H 1.09000 * 109.48704 * 298.43267 * 12 11 10 38 38 H 1.08999 * 109.50765 * 178.37752 * 12 11 10 39 39 H 1.09003 * 109.46901 * 53.80430 * 14 13 12 40 40 H 1.08996 * 109.46722 * 173.79775 * 14 13 12 41 41 H 0.96998 * 120.00565 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.49466 * 299.35176 * 23 13 12 43 43 H 1.08999 * 109.50855 * 179.29728 * 23 13 12 44 44 H 1.09002 * 109.49139 * 303.15913 * 24 10 9 45 45 H 1.09000 * 109.48787 * 63.22970 * 24 10 9 46 46 H 1.08000 * 120.79315 * 180.02562 * 25 9 8 47 47 H 1.08999 * 109.30373 * 222.32051 * 27 26 6 48 48 H 1.08998 * 109.14073 * 102.82153 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0266 0.0000 4 6 2.0454 -0.7312 -1.2451 5 6 3.5529 -0.5068 -1.3507 6 6 4.2246 -0.8500 -0.0474 7 7 5.5327 -1.0623 -0.0535 8 7 6.1909 -1.3551 1.0058 9 6 5.6051 -1.4661 2.1893 10 7 6.3554 -1.7830 3.3163 11 6 6.1873 -0.7662 4.3640 12 6 6.9636 -1.1910 5.6127 13 7 8.3826 -1.3606 5.2701 14 6 9.1752 -1.6954 6.4608 15 6 9.1762 -0.5243 7.4092 16 1 8.6419 0.3786 7.1529 17 6 9.8602 -0.6051 8.6036 18 7 9.8615 0.4171 9.4311 19 14 10.7850 -2.1665 9.0465 20 1 12.1782 -2.0770 8.5405 21 1 10.8039 -2.3288 10.5225 22 1 10.1080 -3.3349 8.4287 23 6 8.5506 -2.3775 4.2226 24 6 7.7742 -1.9530 2.9737 25 6 4.2399 -1.2560 2.2939 26 6 3.5324 -0.9445 1.1396 27 6 2.0481 -0.7305 1.2385 28 1 -0.3634 -1.0276 0.0075 29 1 -0.3632 0.5204 0.8862 30 1 -0.3632 0.5073 -0.8937 31 1 1.5530 -0.3341 -2.1328 32 1 1.8391 -1.7980 -1.1583 33 1 3.9567 -1.1388 -2.1417 34 1 3.7456 0.5387 -1.5912 35 1 6.5686 0.1905 4.0066 36 1 5.1299 -0.6678 4.6090 37 1 6.5643 -2.1341 5.9857 38 1 6.8641 -0.4246 6.3813 39 1 8.7389 -2.5632 6.9555 40 1 10.1988 -1.9232 6.1635 41 1 10.3424 0.3601 10.2715 42 1 8.1693 -3.3341 4.5798 43 1 9.6080 -2.4762 3.9773 44 1 7.8735 -2.7199 2.2054 45 1 8.1737 -1.0100 2.6005 46 1 3.7390 -1.3402 3.2470 47 1 1.8280 -0.1365 2.1256 48 1 1.5522 -1.6977 1.3203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165057857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:38 Heat of formation + Delta-G solvation = 61.852332 kcal Electronic energy + Delta-G solvation = -26388.641131 eV Core-core repulsion = 22864.414943 eV Total energy + Delta-G solvation = -3524.226188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60967 -39.23390 -37.82790 -35.60840 -33.41509 -32.81132 -32.32431 -30.73540 -30.21620 -28.15342 -27.68282 -25.35126 -24.75755 -23.36711 -22.62853 -22.49184 -21.17163 -20.13553 -19.48587 -17.79530 -17.07452 -16.77477 -16.23622 -15.56515 -14.90574 -14.88041 -14.69064 -14.53323 -14.39903 -14.24932 -13.93033 -13.84523 -13.53613 -13.26240 -13.05696 -12.91938 -12.61972 -12.33441 -12.14883 -12.01384 -11.66190 -11.61002 -11.35263 -11.18069 -11.02411 -10.94220 -10.84312 -10.65477 -10.58157 -10.33276 -10.15987 -9.87019 -9.78160 -9.54505 -9.30218 -8.60041 -8.29228 -7.45772 -6.08604 -4.06493 0.71840 0.89853 3.26353 3.27041 3.34462 3.36428 3.57471 4.02739 4.16374 4.25537 4.32123 4.36654 4.39364 4.62302 4.69272 4.82309 4.91932 5.00584 5.06551 5.09712 5.15627 5.18456 5.23542 5.33526 5.36226 5.38608 5.46571 5.52755 5.56933 5.62855 5.64603 5.67571 5.71479 5.74021 5.80723 5.94437 5.98775 6.03726 6.13606 6.25600 6.38598 6.48652 6.71819 6.85719 6.95505 7.01997 7.54072 7.82382 7.96005 8.60750 8.75502 8.98519 9.52941 11.04312 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.002508 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.797447 B =11159.503766 C =11741.822120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.059 4.059 6 C 0.040 3.960 7 N -0.220 5.220 8 N -0.278 5.278 9 C 0.259 3.741 10 N -0.471 5.471 11 C 0.062 3.938 12 C 0.066 3.934 13 N -0.530 5.530 14 C 0.163 3.837 15 C -0.511 4.511 16 H 0.080 0.920 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.875 3.125 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.268 1.268 23 C 0.050 3.950 24 C 0.069 3.931 25 C -0.141 4.141 26 C -0.054 4.054 27 C -0.076 4.076 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.101 0.899 39 H -0.009 1.009 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.061 0.939 46 H 0.149 0.851 47 H 0.084 0.916 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.240 -3.134 -19.853 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.098 4.098 6 C -0.106 4.106 7 N -0.063 5.063 8 N -0.127 5.127 9 C 0.023 3.977 10 N -0.189 5.189 11 C -0.064 4.064 12 C -0.062 4.062 13 N -0.255 5.255 14 C 0.037 3.963 15 C -0.549 4.549 16 H 0.098 0.902 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.079 4.079 24 C -0.057 4.057 25 C -0.172 4.172 26 C -0.065 4.065 27 C -0.114 4.114 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.119 0.881 39 H 0.008 0.992 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.079 0.921 46 H 0.166 0.834 47 H 0.103 0.897 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.684 -3.166 -20.430 27.206 hybrid contribution -0.657 -0.980 1.416 1.843 sum -18.342 -4.146 -19.014 26.742 Atomic orbital electron populations 1.21811 0.94377 1.02089 1.02089 1.21185 0.95954 0.99863 0.94253 0.90487 1.21669 0.94386 1.01109 0.98139 1.20222 0.94254 1.02789 0.92535 1.22297 0.92355 1.00004 0.95904 1.72855 1.06653 1.06854 1.19975 1.73156 1.30090 1.13766 0.95729 1.21319 0.92072 0.92068 0.92234 1.59267 1.11266 1.42553 1.05862 1.22492 1.00782 0.92070 0.91012 1.22066 0.87975 1.01322 0.94877 1.62130 1.07818 1.44215 1.11287 1.20166 0.92594 0.96345 0.87235 1.21009 1.32668 1.00365 1.00896 0.90165 1.24897 0.96110 0.96111 0.96173 1.69889 1.43052 1.30333 1.10571 0.86860 0.80820 0.84379 0.77704 1.20101 1.21193 1.19257 1.22219 0.99723 0.93890 0.92052 1.22153 0.83786 1.02320 0.97481 1.21736 0.93443 1.01904 1.00149 1.20405 0.97626 0.95953 0.92491 1.20552 0.89548 1.01815 0.99443 0.92465 0.92399 0.92274 0.90590 0.91371 0.89511 0.89734 0.92566 0.90128 0.94811 0.88118 0.99171 0.95590 0.92620 0.94924 0.90143 0.89751 0.92071 0.83352 0.89743 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.20 37.16 0.34 -0.31 16 2 C -0.09 -0.54 2.75 -90.54 -0.25 -0.79 16 3 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 4 C -0.11 -0.67 5.26 -26.68 -0.14 -0.81 16 5 C -0.06 -0.47 5.95 -28.05 -0.17 -0.64 16 6 C 0.04 0.46 6.67 -82.53 -0.55 -0.09 16 7 N -0.22 -3.25 11.36 33.49 0.38 -2.87 16 8 N -0.28 -4.47 9.92 31.04 0.31 -4.16 16 9 C 0.26 3.82 6.46 -155.09 -1.00 2.82 16 10 N -0.47 -7.29 4.74 -173.18 -0.82 -8.11 16 11 C 0.06 0.95 5.37 -3.77 -0.02 0.93 16 12 C 0.07 1.23 5.43 -3.77 -0.02 1.21 16 13 N -0.53 -11.00 4.70 -235.92 -1.11 -12.11 16 14 C 0.16 3.90 3.79 -4.98 -0.02 3.88 16 15 C -0.51 -14.27 9.03 -34.45 -0.31 -14.58 16 16 H 0.08 2.42 7.38 -52.48 -0.39 2.04 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 19 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 23 C 0.05 0.88 5.61 -3.77 -0.02 0.86 16 24 C 0.07 1.12 4.80 -3.76 -0.02 1.10 16 25 C -0.14 -1.67 8.91 -39.22 -0.35 -2.02 16 26 C -0.05 -0.56 5.73 -104.75 -0.60 -1.16 16 27 C -0.08 -0.52 5.04 -28.17 -0.14 -0.67 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.33 8.13 -51.93 -0.42 -0.09 16 32 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.08 1.02 6.84 -51.93 -0.35 0.66 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 2.03 6.79 -51.93 -0.35 1.68 16 39 H -0.01 -0.23 7.18 -51.93 -0.37 -0.60 16 40 H 0.03 0.63 7.45 -51.93 -0.39 0.24 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 44 H 0.08 1.29 7.84 -51.93 -0.41 0.89 16 45 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 46 H 0.15 1.46 7.22 -52.49 -0.38 1.08 16 47 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 369.23 15.07 5.56 5.56 Total: -1.00 -31.89 369.23 -11.07 -42.96 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.13 Total: -3.06 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -3.37 Total: -8.39 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.47 Total: -53.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.89 -11.07 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165057857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.814 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds