Wall clock time and date at job start Tue Mar 31 2020 11:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.64251 * 2 1 4 4 C 1.53315 * 109.64393 * 239.57648 * 2 1 3 5 5 C 1.52773 * 108.53169 * 170.18378 * 4 2 1 6 6 C 1.50590 * 110.29553 * 51.42896 * 5 4 2 7 7 N 1.32516 * 118.22098 * 162.17529 * 6 5 4 8 8 N 1.28099 * 122.68581 * 179.76703 * 7 6 5 9 9 C 1.32526 * 122.03541 * 359.97438 * 8 7 6 10 10 N 1.39054 * 120.29118 * 180.13050 * 9 8 7 11 11 C 1.46958 * 111.00427 * 123.79660 * 10 9 8 12 12 C 1.53045 * 109.36507 * 176.80909 * 11 10 9 13 13 N 1.46961 * 109.36576 * 58.39749 * 12 11 10 14 14 C 1.46901 * 110.99943 * 176.80806 * 13 12 11 15 15 C 1.50690 * 109.47483 * 293.80393 * 14 13 12 16 16 H 1.08007 * 120.00116 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00041 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00144 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.47030 * 90.00047 * 19 17 15 21 21 H 1.48499 * 109.47097 * 210.00129 * 19 17 15 22 22 H 1.48496 * 109.46726 * 329.99939 * 19 17 15 23 23 C 1.46951 * 110.87975 * 300.67840 * 13 12 11 24 24 C 1.46954 * 110.99841 * 359.97438 * 10 9 8 25 25 C 1.38517 * 119.36792 * 359.75861 * 9 8 7 26 26 C 1.37739 * 122.49931 * 341.91471 * 6 5 4 27 27 C 1.50288 * 122.91070 * 0.73892 * 26 6 5 28 28 H 1.08995 * 109.47499 * 180.42020 * 1 2 3 29 29 H 1.09000 * 109.46567 * 300.42343 * 1 2 3 30 30 H 1.08998 * 109.46613 * 60.41727 * 1 2 3 31 31 H 1.09003 * 109.62205 * 50.47062 * 4 2 1 32 32 H 1.09000 * 109.78559 * 289.99510 * 4 2 1 33 33 H 1.09002 * 109.30731 * 171.63167 * 5 4 2 34 34 H 1.09001 * 109.30341 * 291.22474 * 5 4 2 35 35 H 1.09008 * 109.48416 * 296.77497 * 11 10 9 36 36 H 1.08991 * 109.48835 * 56.83532 * 11 10 9 37 37 H 1.09000 * 109.48704 * 298.43267 * 12 11 10 38 38 H 1.08999 * 109.50765 * 178.37752 * 12 11 10 39 39 H 1.09003 * 109.46901 * 53.80430 * 14 13 12 40 40 H 1.08996 * 109.46722 * 173.79775 * 14 13 12 41 41 H 0.96998 * 120.00565 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.49466 * 299.35176 * 23 13 12 43 43 H 1.08999 * 109.50855 * 179.29728 * 23 13 12 44 44 H 1.09002 * 109.49139 * 303.15913 * 24 10 9 45 45 H 1.09000 * 109.48787 * 63.22970 * 24 10 9 46 46 H 1.08000 * 120.79315 * 180.02562 * 25 9 8 47 47 H 1.08999 * 109.30373 * 222.32051 * 27 26 6 48 48 H 1.08998 * 109.14073 * 102.82153 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0266 0.0000 4 6 2.0454 -0.7312 -1.2451 5 6 3.5529 -0.5068 -1.3507 6 6 4.2246 -0.8500 -0.0474 7 7 5.5327 -1.0623 -0.0535 8 7 6.1909 -1.3551 1.0058 9 6 5.6051 -1.4661 2.1893 10 7 6.3554 -1.7830 3.3163 11 6 6.1873 -0.7662 4.3640 12 6 6.9636 -1.1910 5.6127 13 7 8.3826 -1.3606 5.2701 14 6 9.1752 -1.6954 6.4608 15 6 9.1762 -0.5243 7.4092 16 1 8.6419 0.3786 7.1529 17 6 9.8602 -0.6051 8.6036 18 7 9.8615 0.4171 9.4311 19 14 10.7850 -2.1665 9.0465 20 1 12.1782 -2.0770 8.5405 21 1 10.8039 -2.3288 10.5225 22 1 10.1080 -3.3349 8.4287 23 6 8.5506 -2.3775 4.2226 24 6 7.7742 -1.9530 2.9737 25 6 4.2399 -1.2560 2.2939 26 6 3.5324 -0.9445 1.1396 27 6 2.0481 -0.7305 1.2385 28 1 -0.3634 -1.0276 0.0075 29 1 -0.3632 0.5204 0.8862 30 1 -0.3632 0.5073 -0.8937 31 1 1.5530 -0.3341 -2.1328 32 1 1.8391 -1.7980 -1.1583 33 1 3.9567 -1.1388 -2.1417 34 1 3.7456 0.5387 -1.5912 35 1 6.5686 0.1905 4.0066 36 1 5.1299 -0.6678 4.6090 37 1 6.5643 -2.1341 5.9857 38 1 6.8641 -0.4246 6.3813 39 1 8.7389 -2.5632 6.9555 40 1 10.1988 -1.9232 6.1635 41 1 10.3424 0.3601 10.2715 42 1 8.1693 -3.3341 4.5798 43 1 9.6080 -2.4762 3.9773 44 1 7.8735 -2.7199 2.2054 45 1 8.1737 -1.0100 2.6005 46 1 3.7390 -1.3402 3.2470 47 1 1.8280 -0.1365 2.1256 48 1 1.5522 -1.6977 1.3203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165057857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:37 Heat of formation + Delta-G solvation = 41.069123 kcal Electronic energy + Delta-G solvation = -26389.542359 eV Core-core repulsion = 22864.414943 eV Total energy + Delta-G solvation = -3525.127416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58361 -40.43777 -38.64848 -37.00555 -34.76374 -34.12186 -33.40444 -32.08723 -31.36977 -29.67319 -28.38940 -26.82429 -25.75988 -24.32264 -23.76989 -23.42696 -22.82484 -21.00952 -20.63068 -19.09709 -18.66837 -18.09196 -17.06030 -16.69928 -16.48556 -16.05026 -15.79834 -15.74056 -15.57813 -15.28611 -15.19213 -14.85303 -14.66339 -14.32350 -14.17907 -13.85956 -13.66933 -13.48294 -13.24266 -13.15926 -12.89248 -12.63736 -12.50100 -12.36601 -12.29070 -12.22353 -11.89080 -11.85312 -11.81110 -11.57078 -11.42919 -11.33818 -11.22042 -10.78626 -10.62986 -10.48815 -9.45711 -9.10877 -8.28932 -6.32530 -0.21277 -0.07450 1.35739 1.36185 1.46970 2.18742 2.34022 2.55523 3.03072 3.12081 3.13236 3.43228 3.51038 3.57778 3.74890 3.87330 3.89574 3.99532 4.07127 4.21425 4.23793 4.29430 4.34065 4.41818 4.45742 4.54990 4.56453 4.70811 4.75943 4.76666 4.80794 4.84572 4.86619 4.92829 4.94522 5.00132 5.03360 5.05427 5.11454 5.19923 5.22412 5.37985 5.43734 5.50441 5.54463 5.62527 5.82233 5.96791 6.28034 6.58815 6.73058 7.31164 7.74083 8.87324 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.029755 B = 0.002508 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.797447 B =11159.503766 C =11741.822120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.060 4.060 6 C 0.042 3.958 7 N -0.255 5.255 8 N -0.312 5.312 9 C 0.240 3.760 10 N -0.471 5.471 11 C 0.074 3.926 12 C 0.070 3.930 13 N -0.548 5.548 14 C 0.173 3.827 15 C -0.516 4.516 16 H 0.040 0.960 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.946 3.054 20 H -0.266 1.266 21 H -0.281 1.281 22 H -0.252 1.252 23 C 0.054 3.946 24 C 0.081 3.919 25 C -0.142 4.142 26 C -0.046 4.046 27 C -0.075 4.075 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.075 0.925 39 H -0.009 1.009 40 H 0.030 0.970 41 H 0.267 0.733 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.043 0.957 46 H 0.171 0.829 47 H 0.097 0.903 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.429 -4.636 -21.127 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.099 4.099 6 C -0.105 4.105 7 N -0.097 5.097 8 N -0.160 5.160 9 C 0.003 3.997 10 N -0.190 5.190 11 C -0.052 4.052 12 C -0.059 4.059 13 N -0.273 5.273 14 C 0.046 3.954 15 C -0.554 4.554 16 H 0.058 0.942 17 C -0.188 4.188 18 N -0.587 5.587 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.175 1.175 23 C -0.075 4.075 24 C -0.046 4.046 25 C -0.172 4.172 26 C -0.058 4.058 27 C -0.112 4.112 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.131 0.869 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.009 0.991 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.189 0.811 47 H 0.116 0.884 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.886 -4.672 -21.752 29.840 hybrid contribution -0.105 -0.394 1.688 1.737 sum -19.991 -5.066 -20.064 28.773 Atomic orbital electron populations 1.21778 0.93040 1.02577 1.02602 1.21182 0.96943 0.99381 0.93541 0.90897 1.21676 0.92505 1.01409 0.99145 1.20380 0.95677 1.03124 0.90702 1.22938 0.91530 0.98134 0.97875 1.72786 1.08454 1.08583 1.19882 1.73030 1.31444 1.15049 0.96443 1.21404 0.93123 0.93533 0.91616 1.59314 1.10691 1.42681 1.06322 1.22348 1.01926 0.91219 0.89667 1.21980 0.87292 1.00637 0.95959 1.62026 1.08840 1.45752 1.10695 1.19921 0.93392 0.94386 0.87700 1.21217 1.31850 1.00365 1.01989 0.94165 1.25815 0.97181 0.99780 0.96020 1.70039 1.44485 1.32884 1.11292 0.85729 0.79546 0.80166 0.77582 1.19154 1.20707 1.17534 1.22252 1.00609 0.93163 0.91428 1.21962 0.84402 1.01580 0.96685 1.22033 0.92372 1.01106 1.01733 1.20829 0.99479 0.94020 0.91434 1.20694 0.86823 1.03015 1.00696 0.91971 0.92172 0.91583 0.88605 0.91198 0.89391 0.89035 0.94214 0.86911 0.94404 0.90706 0.99103 0.95234 0.92397 0.94323 0.89428 0.88958 0.93852 0.81120 0.88419 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 71.98 0.66 -0.11 16 2 C -0.09 -0.76 2.75 -10.74 -0.03 -0.79 16 3 H 0.07 0.69 8.10 -2.39 -0.02 0.67 16 4 C -0.11 -0.93 5.26 30.62 0.16 -0.77 16 5 C -0.06 -0.85 5.95 29.74 0.18 -0.67 16 6 C 0.04 0.91 6.67 42.30 0.28 1.19 16 7 N -0.25 -7.53 11.36 -47.94 -0.54 -8.07 16 8 N -0.31 -10.10 9.92 -55.69 -0.55 -10.65 16 9 C 0.24 6.93 6.46 132.86 0.86 7.79 16 10 N -0.47 -14.31 4.74 -701.83 -3.33 -17.64 16 11 C 0.07 2.26 5.37 86.31 0.46 2.72 16 12 C 0.07 2.62 5.43 86.31 0.47 3.09 16 13 N -0.55 -23.02 4.70 -900.30 -4.23 -27.25 16 14 C 0.17 8.30 3.79 85.55 0.32 8.63 16 15 C -0.52 -29.65 9.03 25.60 0.23 -29.41 16 16 H 0.04 2.57 7.38 -2.91 -0.02 2.54 16 17 C 0.01 0.55 5.47 84.65 0.46 1.02 16 18 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 19 Si 0.95 43.92 27.47 68.60 1.88 45.80 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 23 C 0.05 1.87 5.61 86.31 0.48 2.35 16 24 C 0.08 2.61 4.80 86.31 0.41 3.03 16 25 C -0.14 -3.10 8.91 22.50 0.20 -2.90 16 26 C -0.05 -0.87 5.73 -19.95 -0.11 -0.98 16 27 C -0.08 -0.79 5.04 29.67 0.15 -0.64 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.10 0.48 8.13 -2.39 -0.02 0.46 16 32 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.11 2.66 6.84 -2.39 -0.02 2.65 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 3.17 6.79 -2.39 -0.02 3.15 16 39 H -0.01 -0.42 7.18 -2.39 -0.02 -0.43 16 40 H 0.03 1.40 7.45 -2.39 -0.02 1.38 16 41 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 2.87 8.07 -2.39 -0.02 2.85 16 44 H 0.09 2.83 7.84 -2.39 -0.02 2.81 16 45 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 46 H 0.17 2.85 7.22 -2.91 -0.02 2.83 16 47 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.10 0.85 8.12 -2.39 -0.02 0.83 16 Total: -1.00 -71.45 369.23 -0.40 -71.86 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.87 Total: 10.97 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 5.20 Total: -6.47 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -8.36 Total: -122.16 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -71.45 -0.40 -71.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165057857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.925 kcal (2) G-P(sol) polarization free energy of solvation -71.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds