Wall clock time and date at job start Tue Mar 31 2020 11:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48491 * 109.47329 * 269.99796 * 3 2 1 5 5 H 1.48502 * 109.47366 * 30.00240 * 3 2 1 6 6 H 1.48506 * 109.46959 * 150.00013 * 3 2 1 7 7 C 1.37869 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00442 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99971 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47405 * 180.02562 * 9 7 2 11 11 C 1.38997 * 119.99953 * 89.99877 * 10 9 7 12 12 C 1.39184 * 120.03916 * 181.09159 * 11 10 9 13 13 N 1.32032 * 120.07414 * 179.97438 * 12 11 10 14 14 C 1.32064 * 120.17622 * 0.02562 * 13 12 11 15 15 C 1.39135 * 120.08143 * 359.97438 * 14 13 12 16 16 N 1.38991 * 120.03977 * 180.02562 * 15 14 13 17 17 C 1.48533 * 111.00020 * 186.25521 * 16 15 14 18 18 C 1.54938 * 103.22864 * 159.71929 * 17 16 15 19 19 C 1.54597 * 102.92023 * 322.58762 * 18 17 16 20 20 C 1.47900 * 110.99726 * 303.64935 * 16 15 14 21 21 N 1.32723 * 120.04281 * 0.81104 * 11 10 9 22 22 C 1.46498 * 119.99970 * 270.00185 * 10 9 7 23 23 C 1.54266 * 110.03718 * 63.07641 * 22 10 9 24 24 C 1.54886 * 104.19909 * 217.10923 * 23 22 10 25 25 C 1.54890 * 102.74808 * 37.93625 * 24 23 22 26 26 C 1.53875 * 110.03341 * 305.90746 * 22 10 9 27 27 H 0.96993 * 120.00082 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47038 * 60.00062 * 9 7 2 29 29 H 1.09001 * 109.47087 * 299.99776 * 9 7 2 30 30 H 1.08000 * 119.96128 * 359.95354 * 12 11 10 31 31 H 1.07998 * 119.95780 * 179.97438 * 14 13 12 32 32 H 1.08998 * 110.66961 * 278.15850 * 17 16 15 33 33 H 1.09006 * 110.66809 * 41.28319 * 17 16 15 34 34 H 1.08999 * 110.72059 * 204.22966 * 18 17 16 35 35 H 1.09000 * 110.72350 * 80.94297 * 18 17 16 36 36 H 1.08997 * 110.30612 * 263.04378 * 19 18 17 37 37 H 1.09000 * 110.30711 * 140.87363 * 19 18 17 38 38 H 1.08990 * 109.91983 * 333.51086 * 20 16 15 39 39 H 1.09003 * 109.91465 * 94.81115 * 20 16 15 40 40 H 1.08999 * 110.01715 * 184.52127 * 22 10 9 41 41 H 1.08998 * 110.48036 * 335.78752 * 23 22 10 42 42 H 1.09004 * 110.48522 * 98.42396 * 23 22 10 43 43 H 1.09002 * 110.75359 * 279.62599 * 24 23 22 44 44 H 1.08997 * 110.91458 * 156.33479 * 24 23 22 45 45 H 1.09002 * 110.48462 * 203.38107 * 25 24 23 46 46 H 1.09003 * 110.48335 * 80.74379 * 25 24 23 47 47 H 1.08993 * 110.03638 * 238.57321 * 26 22 10 48 48 H 1.09000 * 110.03186 * 0.02562 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6538 -4.1414 1.2024 12 6 3.5756 -5.1842 1.2037 13 7 4.0046 -5.6867 2.3469 14 6 3.5610 -5.2027 3.4928 15 6 2.6394 -4.1603 3.4995 16 7 2.1735 -3.6513 4.7060 17 6 1.0945 -2.6554 4.4824 18 6 0.3666 -2.6082 5.8493 19 6 0.4046 -4.0828 6.3122 20 6 1.5717 -4.7186 5.5344 21 7 2.2100 -3.6488 2.3521 22 6 2.6801 -4.1688 -1.2701 23 6 3.4654 -3.0976 -2.0548 24 6 3.0854 -3.3556 -3.5340 25 6 1.5856 -3.7309 -3.4412 26 6 1.4850 -4.5715 -2.1516 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 3.9401 -5.5831 0.2686 31 1 3.9139 -5.6166 4.4258 32 1 1.5156 -1.6805 4.2369 33 1 0.4172 -2.9917 3.6973 34 1 -0.6619 -2.2686 5.7271 35 1 0.9040 -1.9698 6.5506 36 1 -0.5320 -4.5816 6.0633 37 1 0.5902 -4.1378 7.3849 38 1 1.1997 -5.5193 4.8955 39 1 2.3128 -5.1099 6.2314 40 1 3.3144 -5.0352 -1.0826 41 1 3.1555 -2.0980 -1.7501 42 1 4.5377 -3.2269 -1.9081 43 1 3.6659 -4.1825 -3.9433 44 1 3.2222 -2.4556 -4.1335 45 1 1.2861 -4.3223 -4.3064 46 1 0.9721 -2.8335 -3.3605 47 1 1.5397 -5.6330 -2.3926 48 1 0.5500 -4.3527 -1.6357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166533896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:01 Heat of formation + Delta-G solvation = 65.896741 kcal Electronic energy + Delta-G solvation = -27742.068440 eV Core-core repulsion = 24218.017631 eV Total energy + Delta-G solvation = -3524.050810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.73036 -38.85926 -37.93012 -34.89139 -33.48231 -32.77227 -31.32752 -28.97647 -28.75728 -28.31787 -27.82166 -26.14830 -24.01745 -23.14995 -21.80503 -21.02966 -20.46585 -20.28166 -18.96899 -17.41928 -16.86909 -16.41456 -16.17666 -15.92685 -15.86865 -14.87970 -14.71559 -14.42372 -14.13034 -13.74467 -13.18916 -13.01945 -12.81333 -12.71061 -12.38408 -12.25871 -12.01718 -11.72699 -11.40240 -11.33678 -11.29774 -11.07777 -10.93445 -10.81397 -10.73264 -10.66016 -10.61073 -10.50343 -10.42375 -10.34268 -10.18366 -9.99000 -9.71089 -9.33113 -8.46479 -8.38892 -8.18056 -6.83685 -6.05737 -4.10943 1.57940 2.01607 3.25775 3.33323 3.37486 3.54352 3.93878 4.39274 4.42754 4.64737 4.78969 4.87453 4.96450 5.01461 5.06257 5.17846 5.24884 5.27874 5.30859 5.46178 5.55212 5.66654 5.72505 5.80083 5.82851 5.84576 5.90421 5.95202 5.97063 5.99598 6.04109 6.07031 6.22751 6.27889 6.29954 6.36973 6.40968 6.55466 6.64365 6.68691 6.75107 6.98678 7.12085 7.28655 7.44985 7.75738 7.86384 8.09179 8.21345 8.32617 8.69223 8.92916 9.52178 10.99000 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.005581 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.849247 B = 5015.772013 C = 6818.981984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.253 3.747 10 N -0.569 5.569 11 C 0.402 3.598 12 C -0.070 4.070 13 N -0.390 5.390 14 C -0.063 4.063 15 C 0.310 3.690 16 N -0.458 5.458 17 C 0.051 3.949 18 C -0.128 4.128 19 C -0.130 4.130 20 C 0.046 3.954 21 N -0.517 5.517 22 C 0.149 3.851 23 C -0.149 4.149 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.133 4.133 27 H 0.262 0.738 28 H 0.034 0.966 29 H 0.044 0.956 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.113 0.887 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 -9.567 3.565 10.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.134 3.866 10 N -0.275 5.275 11 C 0.160 3.840 12 C -0.239 4.239 13 N -0.103 5.103 14 C -0.228 4.228 15 C 0.072 3.928 16 N -0.177 5.177 17 C -0.075 4.075 18 C -0.166 4.166 19 C -0.168 4.168 20 C -0.080 4.080 21 N -0.244 5.244 22 C 0.044 3.956 23 C -0.187 4.187 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.172 4.172 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.515 -9.107 3.668 9.934 hybrid contribution -0.017 0.854 -0.365 0.929 sum 1.498 -8.254 3.303 9.015 Atomic orbital electron populations 1.69920 1.05854 1.26844 1.50550 1.24869 0.94776 0.98863 0.95246 0.86626 0.79986 0.83569 0.78059 1.20682 1.21164 1.19994 1.21396 0.93149 0.90473 1.50446 0.92482 1.19281 0.87237 0.81837 0.98291 1.47360 1.45462 1.34684 1.00038 1.19204 0.88986 0.88720 0.87084 1.22793 1.03142 1.00865 0.97139 1.67954 1.19750 1.24669 0.97880 1.22492 1.02998 1.00472 0.96837 1.20688 0.93087 0.90124 0.88926 1.61851 1.33201 1.11699 1.10910 1.23132 0.91528 0.96514 0.96343 1.22572 1.00901 0.96026 0.97129 1.22416 0.97777 0.96408 1.00172 1.22899 0.96281 0.92791 0.96061 1.67967 1.28904 1.31102 0.96468 1.21707 0.94839 0.95765 0.83294 1.23069 0.98751 1.03087 0.93835 1.22397 0.95961 1.00503 0.96895 1.22297 0.96969 1.00022 0.96455 1.22501 0.99404 0.99003 0.96252 0.92834 0.94801 0.93808 0.82751 0.83073 0.89065 0.90980 0.90640 0.90838 0.91254 0.90796 0.92886 0.89639 0.90197 0.86871 0.92492 0.92387 0.91775 0.92404 0.90904 0.91975 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -13.59 7.53 -34.44 -0.26 -13.84 16 8 H 0.06 1.55 7.14 -52.49 -0.37 1.18 16 9 C 0.25 6.12 4.62 -5.19 -0.02 6.09 16 10 N -0.57 -11.64 2.51 -166.24 -0.42 -12.06 16 11 C 0.40 8.30 7.38 -154.73 -1.14 7.16 16 12 C -0.07 -1.29 10.48 -17.11 -0.18 -1.47 16 13 N -0.39 -7.17 10.48 -12.70 -0.13 -7.30 16 14 C -0.06 -1.10 10.43 -17.12 -0.18 -1.28 16 15 C 0.31 5.82 6.16 -154.72 -0.95 4.86 16 16 N -0.46 -7.50 5.32 -169.14 -0.90 -8.40 16 17 C 0.05 0.86 5.90 -1.90 -0.01 0.85 16 18 C -0.13 -1.61 7.06 -24.87 -0.18 -1.78 16 19 C -0.13 -1.39 6.93 -25.37 -0.18 -1.57 16 20 C 0.05 0.58 5.96 -2.75 -0.02 0.56 16 21 N -0.52 -11.08 7.50 -11.42 -0.09 -11.17 16 22 C 0.15 2.50 3.23 -66.81 -0.22 2.28 16 23 C -0.15 -2.52 6.43 -25.07 -0.16 -2.68 16 24 C -0.12 -1.68 6.91 -24.74 -0.17 -1.86 16 25 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 26 C -0.13 -2.04 5.97 -25.61 -0.15 -2.19 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.85 6.49 -51.93 -0.34 0.51 16 29 H 0.04 1.19 7.37 -51.93 -0.38 0.81 16 30 H 0.16 2.47 5.73 -52.49 -0.30 2.17 16 31 H 0.15 2.22 7.89 -52.49 -0.41 1.81 16 32 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 33 H 0.07 1.38 7.36 -51.93 -0.38 0.99 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.69 7.70 -51.93 -0.40 0.29 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 1.19 5.34 -51.93 -0.28 0.91 16 41 H 0.11 2.34 4.94 -51.93 -0.26 2.09 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -29.10 369.79 -12.01 -41.11 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.68 Total: 5.48 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -4.08 Total: -5.12 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.80 Total: -63.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.10 -12.01 -41.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.004 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds