Wall clock time and date at job start Tue Mar 31 2020 11:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99632 * 2 1 4 4 H 1.48491 * 109.47329 * 269.99796 * 3 2 1 5 5 H 1.48502 * 109.47366 * 30.00240 * 3 2 1 6 6 H 1.48506 * 109.46959 * 150.00013 * 3 2 1 7 7 C 1.37869 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00442 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99971 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47405 * 180.02562 * 9 7 2 11 11 C 1.38997 * 119.99953 * 89.99877 * 10 9 7 12 12 C 1.39184 * 120.03916 * 181.09159 * 11 10 9 13 13 N 1.32032 * 120.07414 * 179.97438 * 12 11 10 14 14 C 1.32064 * 120.17622 * 0.02562 * 13 12 11 15 15 C 1.39135 * 120.08143 * 359.97438 * 14 13 12 16 16 N 1.38991 * 120.03977 * 180.02562 * 15 14 13 17 17 C 1.48533 * 111.00020 * 186.25521 * 16 15 14 18 18 C 1.54938 * 103.22864 * 159.71929 * 17 16 15 19 19 C 1.54597 * 102.92023 * 322.58762 * 18 17 16 20 20 C 1.47900 * 110.99726 * 303.64935 * 16 15 14 21 21 N 1.32723 * 120.04281 * 0.81104 * 11 10 9 22 22 C 1.46498 * 119.99970 * 270.00185 * 10 9 7 23 23 C 1.54266 * 110.03718 * 63.07641 * 22 10 9 24 24 C 1.54886 * 104.19909 * 217.10923 * 23 22 10 25 25 C 1.54890 * 102.74808 * 37.93625 * 24 23 22 26 26 C 1.53875 * 110.03341 * 305.90746 * 22 10 9 27 27 H 0.96993 * 120.00082 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47038 * 60.00062 * 9 7 2 29 29 H 1.09001 * 109.47087 * 299.99776 * 9 7 2 30 30 H 1.08000 * 119.96128 * 359.95354 * 12 11 10 31 31 H 1.07998 * 119.95780 * 179.97438 * 14 13 12 32 32 H 1.08998 * 110.66961 * 278.15850 * 17 16 15 33 33 H 1.09006 * 110.66809 * 41.28319 * 17 16 15 34 34 H 1.08999 * 110.72059 * 204.22966 * 18 17 16 35 35 H 1.09000 * 110.72350 * 80.94297 * 18 17 16 36 36 H 1.08997 * 110.30612 * 263.04378 * 19 18 17 37 37 H 1.09000 * 110.30711 * 140.87363 * 19 18 17 38 38 H 1.08990 * 109.91983 * 333.51086 * 20 16 15 39 39 H 1.09003 * 109.91465 * 94.81115 * 20 16 15 40 40 H 1.08999 * 110.01715 * 184.52127 * 22 10 9 41 41 H 1.08998 * 110.48036 * 335.78752 * 23 22 10 42 42 H 1.09004 * 110.48522 * 98.42396 * 23 22 10 43 43 H 1.09002 * 110.75359 * 279.62599 * 24 23 22 44 44 H 1.08997 * 110.91458 * 156.33479 * 24 23 22 45 45 H 1.09002 * 110.48462 * 203.38107 * 25 24 23 46 46 H 1.09003 * 110.48335 * 80.74379 * 25 24 23 47 47 H 1.08993 * 110.03638 * 238.57321 * 26 22 10 48 48 H 1.09000 * 110.03186 * 0.02562 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0015 11 6 2.6538 -4.1414 1.2024 12 6 3.5756 -5.1842 1.2037 13 7 4.0046 -5.6867 2.3469 14 6 3.5610 -5.2027 3.4928 15 6 2.6394 -4.1603 3.4995 16 7 2.1735 -3.6513 4.7060 17 6 1.0945 -2.6554 4.4824 18 6 0.3666 -2.6082 5.8493 19 6 0.4046 -4.0828 6.3122 20 6 1.5717 -4.7186 5.5344 21 7 2.2100 -3.6488 2.3521 22 6 2.6801 -4.1688 -1.2701 23 6 3.4654 -3.0976 -2.0548 24 6 3.0854 -3.3556 -3.5340 25 6 1.5856 -3.7309 -3.4412 26 6 1.4850 -4.5715 -2.1516 27 1 -0.4850 0.8400 -0.0004 28 1 0.6249 -2.5563 -0.8919 29 1 0.6242 -2.5575 0.8880 30 1 3.9401 -5.5831 0.2686 31 1 3.9139 -5.6166 4.4258 32 1 1.5156 -1.6805 4.2369 33 1 0.4172 -2.9917 3.6973 34 1 -0.6619 -2.2686 5.7271 35 1 0.9040 -1.9698 6.5506 36 1 -0.5320 -4.5816 6.0633 37 1 0.5902 -4.1378 7.3849 38 1 1.1997 -5.5193 4.8955 39 1 2.3128 -5.1099 6.2314 40 1 3.3144 -5.0352 -1.0826 41 1 3.1555 -2.0980 -1.7501 42 1 4.5377 -3.2269 -1.9081 43 1 3.6659 -4.1825 -3.9433 44 1 3.2222 -2.4556 -4.1335 45 1 1.2861 -4.3223 -4.3064 46 1 0.9721 -2.8335 -3.3605 47 1 1.5397 -5.6330 -2.3926 48 1 0.5500 -4.3527 -1.6357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166533896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:01 Heat of formation + Delta-G solvation = 50.216317 kcal Electronic energy + Delta-G solvation = -27742.748395 eV Core-core repulsion = 24218.017631 eV Total energy + Delta-G solvation = -3524.730764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16465 -40.18249 -39.22521 -36.38519 -34.90276 -34.70772 -32.71795 -30.52295 -30.01222 -29.59462 -29.24296 -27.73569 -25.65029 -24.63449 -23.38168 -22.32637 -21.59358 -21.49740 -20.37169 -18.84878 -18.60829 -18.23611 -17.47952 -17.25251 -17.12799 -16.62379 -16.06417 -15.94908 -15.53530 -14.93544 -14.70706 -14.54736 -14.16270 -14.01800 -13.74652 -13.58806 -13.37580 -13.29835 -13.21909 -12.75452 -12.71233 -12.61476 -12.34726 -12.30533 -12.21813 -12.02820 -11.98768 -11.93371 -11.83443 -11.65339 -11.47110 -11.36693 -11.21092 -11.04764 -10.58236 -9.88654 -9.60821 -8.48115 -8.06413 -6.27336 0.13536 0.51803 1.32115 1.34217 1.43345 2.06843 2.37142 2.60764 2.97419 3.11133 3.47646 3.53243 3.62410 3.74783 3.79536 3.81834 3.94534 4.04354 4.09349 4.30961 4.35997 4.43517 4.53848 4.56994 4.59806 4.68676 4.69316 4.73777 4.85407 4.88328 4.92633 4.96490 5.01263 5.01451 5.11182 5.13470 5.20923 5.22982 5.27233 5.32824 5.40064 5.46328 5.54276 5.65088 5.69836 5.95776 6.11424 6.22459 6.46060 6.80190 6.82413 7.22508 7.39632 8.88014 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.005581 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.849247 B = 5015.772013 C = 6818.981984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.017 3.983 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.513 4.513 8 H 0.044 0.956 9 C 0.281 3.719 10 N -0.577 5.577 11 C 0.379 3.621 12 C -0.066 4.066 13 N -0.394 5.394 14 C -0.053 4.053 15 C 0.297 3.703 16 N -0.460 5.460 17 C 0.052 3.948 18 C -0.120 4.120 19 C -0.120 4.120 20 C 0.042 3.958 21 N -0.557 5.557 22 C 0.143 3.857 23 C -0.151 4.151 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.130 4.130 27 H 0.263 0.737 28 H 0.018 0.982 29 H 0.005 0.995 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.095 0.905 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.809 -11.416 4.203 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.552 4.552 8 H 0.062 0.938 9 C 0.160 3.840 10 N -0.285 5.285 11 C 0.138 3.862 12 C -0.234 4.234 13 N -0.106 5.106 14 C -0.218 4.218 15 C 0.059 3.941 16 N -0.179 5.179 17 C -0.075 4.075 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.083 4.083 21 N -0.285 5.285 22 C 0.040 3.960 23 C -0.190 4.190 24 C -0.147 4.147 25 C -0.155 4.155 26 C -0.168 4.168 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.023 0.977 30 H 0.198 0.802 31 H 0.201 0.799 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.132 0.868 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.058 0.942 47 H 0.113 0.887 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.005 -10.983 4.307 12.174 hybrid contribution -0.450 1.385 -0.471 1.530 sum 2.555 -9.599 3.836 10.648 Atomic orbital electron populations 1.70025 1.07054 1.27544 1.51717 1.25577 0.95524 1.01902 0.95192 0.85716 0.78400 0.80035 0.78463 1.19406 1.20724 1.20536 1.21524 0.92486 0.91684 1.49529 0.93782 1.18595 0.87239 0.82748 0.95465 1.47237 1.45434 1.34255 1.01542 1.19547 0.90046 0.89805 0.86837 1.23064 1.02170 0.99898 0.98289 1.68054 1.19796 1.24677 0.98067 1.22971 1.01672 0.99336 0.97829 1.21088 0.93557 0.90495 0.88951 1.61924 1.33063 1.12766 1.10125 1.22954 0.91424 0.94953 0.98144 1.22548 1.00720 0.98076 0.94435 1.22435 0.97424 0.94317 1.01633 1.23122 0.97681 0.91616 0.95878 1.67937 1.30197 1.32590 0.97780 1.22030 0.95760 0.96344 0.81908 1.22992 0.99371 1.00621 0.96002 1.22380 0.95690 1.01788 0.94843 1.22275 0.97018 0.98988 0.97240 1.22496 0.97273 1.01061 0.95957 0.92762 0.96384 0.97710 0.80201 0.79874 0.92565 0.94307 0.89980 0.89675 0.90461 0.87664 0.93542 0.86770 0.87537 0.91317 0.91327 0.89019 0.91786 0.89334 0.94231 0.88659 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.36 13.29 21.44 0.28 -54.08 16 2 C 0.02 0.96 5.46 84.65 0.46 1.42 16 3 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.51 -28.60 7.53 25.60 0.19 -28.41 16 8 H 0.04 2.53 7.14 -2.91 -0.02 2.50 16 9 C 0.28 14.58 4.62 85.64 0.40 14.98 16 10 N -0.58 -24.61 2.51 -679.87 -1.71 -26.31 16 11 C 0.38 16.04 7.38 132.98 0.98 17.02 16 12 C -0.07 -2.37 10.48 84.89 0.89 -1.48 16 13 N -0.39 -13.79 10.48 -194.09 -2.03 -15.82 16 14 C -0.05 -1.77 10.43 84.87 0.89 -0.88 16 15 C 0.30 11.24 6.16 132.96 0.82 12.06 16 16 N -0.46 -15.02 5.32 -689.03 -3.67 -18.69 16 17 C 0.05 1.86 5.90 86.65 0.51 2.37 16 18 C -0.12 -2.92 7.06 31.80 0.22 -2.69 16 19 C -0.12 -2.28 6.93 31.47 0.22 -2.06 16 20 C 0.04 0.97 5.96 86.45 0.52 1.49 16 21 N -0.56 -25.00 7.50 -190.06 -1.42 -26.43 16 22 C 0.14 4.75 3.23 45.72 0.15 4.90 16 23 C -0.15 -5.08 6.43 31.67 0.20 -4.88 16 24 C -0.11 -2.89 6.91 31.88 0.22 -2.67 16 25 C -0.12 -3.32 6.83 31.67 0.22 -3.10 16 26 C -0.13 -3.90 5.97 31.32 0.19 -3.71 16 27 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.02 0.99 6.49 -2.39 -0.02 0.97 16 29 H 0.00 0.29 7.37 -2.39 -0.02 0.27 16 30 H 0.18 5.33 5.73 -2.91 -0.02 5.31 16 31 H 0.18 4.81 7.89 -2.91 -0.02 4.78 16 32 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.04 1.61 7.36 -2.38 -0.02 1.60 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.14 7.70 -2.39 -0.02 1.12 16 39 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 2.94 5.34 -2.39 -0.01 2.93 16 41 H 0.07 2.96 4.94 -2.39 -0.01 2.95 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 48 H 0.04 1.65 6.60 -2.39 -0.02 1.63 16 Total: -1.00 -68.16 369.79 1.49 -66.66 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.95 Total: 23.22 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 7.07 Total: 4.35 kcal Atomic # 7 Polarization: -132.78 SS G_CDS: -8.55 Total: -141.33 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.16 1.49 -66.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166533896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.879 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds