Wall clock time and date at job start Tue Mar 31 2020 11:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00132 * 2 1 4 4 H 1.48496 * 109.46711 * 269.99725 * 3 2 1 5 5 H 1.48496 * 109.46973 * 29.99463 * 3 2 1 6 6 H 1.48494 * 109.47079 * 149.99686 * 3 2 1 7 7 C 1.37879 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46738 * 180.95322 * 9 7 2 11 11 C 1.38539 * 110.99950 * 294.88457 * 10 9 7 12 12 N 1.32847 * 120.44017 * 98.55387 * 11 10 9 13 13 C 1.31759 * 120.56303 * 180.28318 * 12 11 10 14 14 N 1.31639 * 121.70233 * 358.79828 * 13 12 11 15 15 C 1.32999 * 121.20997 * 0.20639 * 14 13 12 16 16 C 1.37379 * 119.10210 * 1.64070 * 15 14 13 17 17 C 1.50521 * 123.18437 * 177.08406 * 16 15 14 18 18 C 1.52928 * 111.19323 * 29.36715 * 17 16 15 19 19 N 1.46859 * 108.32371 * 268.70212 * 18 17 16 20 20 C 1.46403 * 111.59400 * 61.07326 * 19 18 17 21 21 C 1.50451 * 118.78331 * 182.17845 * 15 14 13 22 22 C 1.46900 * 110.99894 * 58.84050 * 10 9 7 23 23 C 1.54272 * 110.02731 * 179.68757 * 22 10 9 24 24 C 1.54892 * 104.19488 * 217.10474 * 23 22 10 25 25 C 1.54893 * 102.74745 * 37.94287 * 24 23 22 26 26 C 1.53866 * 110.03491 * 62.52360 * 22 10 9 27 27 H 0.96997 * 119.99932 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47140 * 60.95049 * 9 7 2 29 29 H 1.08999 * 109.47119 * 300.95269 * 9 7 2 30 30 H 1.08005 * 119.14885 * 178.82136 * 13 12 11 31 31 H 1.09007 * 109.13285 * 268.93070 * 17 16 15 32 32 H 1.08997 * 109.09384 * 149.78109 * 17 16 15 33 33 H 1.08993 * 109.69322 * 148.99597 * 18 17 16 34 34 H 1.08998 * 109.69092 * 28.40864 * 18 17 16 35 35 H 1.00909 * 110.99632 * 296.68779 * 19 18 17 36 36 H 1.08997 * 109.79456 * 273.60253 * 20 19 18 37 37 H 1.08999 * 109.79161 * 152.74815 * 20 19 18 38 38 H 1.09001 * 109.23030 * 109.01607 * 21 15 14 39 39 H 1.09002 * 109.22681 * 349.64278 * 21 15 14 40 40 H 1.08992 * 110.01666 * 301.12606 * 22 10 9 41 41 H 1.08998 * 110.48853 * 335.78548 * 23 22 10 42 42 H 1.09000 * 110.48242 * 98.42804 * 23 22 10 43 43 H 1.09000 * 110.75456 * 279.62838 * 24 23 22 44 44 H 1.08996 * 110.91404 * 156.33250 * 24 23 22 45 45 H 1.08997 * 110.48275 * 203.38207 * 25 24 23 46 46 H 1.08995 * 110.48151 * 80.73781 * 25 24 23 47 47 H 1.09001 * 110.03350 * 238.56946 * 26 22 10 48 48 H 1.09004 * 110.03630 * 359.97438 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2054 -3.6156 0.0251 11 6 2.9581 -3.6498 -1.1375 12 7 4.1810 -3.1315 -1.1630 13 6 4.8968 -3.1577 -2.2689 14 7 4.4437 -3.7128 -3.3732 15 6 3.2368 -4.2694 -3.4197 16 6 2.4400 -4.2317 -2.3012 17 6 1.0367 -4.7753 -2.2706 18 6 0.8709 -5.9336 -3.2553 19 7 0.4200 -5.3856 -4.5410 20 6 1.3966 -4.4488 -5.0997 21 6 2.7933 -4.9321 -4.6956 22 6 3.0703 -3.5440 1.2104 23 6 4.0574 -4.7296 1.2166 24 6 4.1735 -5.1193 2.7111 25 6 2.7259 -4.9279 3.2278 26 6 2.2238 -3.6701 2.4890 27 1 -0.4850 0.8400 -0.0004 28 1 0.6368 -2.5649 -0.8964 29 1 0.6119 -2.5489 0.8833 30 1 5.8809 -2.7125 -2.2693 31 1 0.3396 -3.9798 -2.5341 32 1 0.8127 -5.1275 -1.2637 33 1 0.1292 -6.6358 -2.8749 34 1 1.8256 -6.4427 -3.3876 35 1 -0.4868 -4.9520 -4.4512 36 1 1.2211 -3.4503 -4.6993 37 1 1.3119 -4.4318 -6.1863 38 1 2.7715 -6.0122 -4.5504 39 1 3.5002 -4.6913 -5.4896 40 1 3.6177 -2.6015 1.2163 41 1 3.6586 -5.5610 0.6354 42 1 5.0271 -4.4206 0.8264 43 1 4.8609 -4.4526 3.2319 44 1 4.4882 -6.1572 2.8193 45 1 2.7241 -4.7637 4.3053 46 1 2.1122 -5.7914 2.9714 47 1 2.3610 -2.7891 3.1161 48 1 1.1711 -3.7841 2.2303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166534863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:33 Heat of formation + Delta-G solvation = 60.585742 kcal Electronic energy + Delta-G solvation = -28498.882369 eV Core-core repulsion = 24974.601257 eV Total energy + Delta-G solvation = -3524.281112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08729 -38.61090 -37.65679 -35.45559 -33.09280 -32.56203 -31.79649 -30.45459 -28.42576 -27.49854 -27.16740 -25.76614 -25.22179 -23.12792 -21.76719 -21.28467 -20.46145 -20.06242 -18.90756 -17.25474 -17.03572 -16.44440 -16.01566 -15.49999 -15.27156 -14.79271 -14.65578 -14.16792 -13.95458 -13.75597 -13.51124 -13.28704 -12.97530 -12.88490 -12.57530 -12.39287 -11.91007 -11.55993 -11.48267 -11.37754 -11.33841 -11.15099 -10.98251 -10.83244 -10.67153 -10.62790 -10.42605 -10.36435 -10.26762 -10.10644 -9.96644 -9.80339 -9.53951 -8.67920 -8.62254 -8.54215 -8.29660 -7.61805 -6.16911 -4.23401 1.50233 1.68486 3.21574 3.28582 3.33275 4.16264 4.32081 4.34513 4.40293 4.44312 4.77738 5.01441 5.02210 5.12270 5.13253 5.17168 5.20371 5.27384 5.31680 5.41365 5.56803 5.68174 5.80034 5.88983 5.93522 5.94928 5.99809 6.00617 6.03358 6.10568 6.14981 6.21970 6.26168 6.28032 6.33745 6.50072 6.55624 6.65623 6.71766 6.81186 6.94419 7.04462 7.08911 7.29358 7.41304 7.46948 7.75263 7.80977 8.06347 8.10145 8.73591 8.86714 9.43838 10.89915 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.006459 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.394450 B = 4334.089361 C = 5615.503525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.195 3.805 10 N -0.482 5.482 11 C 0.396 3.604 12 N -0.541 5.541 13 C 0.298 3.702 14 N -0.549 5.549 15 C 0.169 3.831 16 C -0.181 4.181 17 C -0.099 4.099 18 C 0.052 3.948 19 N -0.694 5.694 20 C 0.064 3.936 21 C -0.079 4.079 22 C 0.096 3.904 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.112 4.112 27 H 0.263 0.737 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.183 0.817 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.343 0.657 36 H 0.041 0.959 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -11.450 -2.739 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.090 0.910 9 C 0.073 3.927 10 N -0.202 5.202 11 C 0.156 3.844 12 N -0.259 5.259 13 C 0.008 3.992 14 N -0.265 5.265 15 C 0.026 3.974 16 C -0.188 4.188 17 C -0.139 4.139 18 C -0.077 4.077 19 N -0.324 5.324 20 C -0.066 4.066 21 C -0.117 4.117 22 C -0.011 4.011 23 C -0.153 4.153 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.200 0.800 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.161 0.839 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.180 -11.886 -3.016 12.955 hybrid contribution -0.001 2.452 0.618 2.529 sum 4.178 -9.434 -2.398 10.593 Atomic orbital electron populations 1.69928 1.05969 1.27034 1.49963 1.24910 0.94751 0.99164 0.94702 0.86608 0.80070 0.83351 0.78182 1.20780 1.21067 1.19682 1.21828 0.94175 0.91182 1.51827 0.91008 1.19911 0.89804 0.84140 0.98879 1.60237 1.16340 1.44608 0.99015 1.20139 0.88111 0.85452 0.90693 1.68605 1.08820 1.17818 1.30658 1.24505 0.98790 0.92363 0.83515 1.68286 1.15022 1.13570 1.29645 1.20999 0.89452 0.92835 0.94097 1.20699 0.99230 1.04734 0.94106 1.21047 0.92153 0.98136 1.02516 1.22277 1.01703 0.96388 0.87322 1.60434 1.05742 1.39190 1.27066 1.21933 0.90292 0.94539 0.99826 1.20734 0.96827 1.00529 0.93565 1.22066 0.92263 0.98394 0.88403 1.22435 0.99244 0.97781 0.95790 1.22437 0.97055 1.00199 0.96275 1.22331 0.96044 0.98453 0.98971 1.22132 1.00569 0.96960 0.95370 0.92731 0.94837 0.93328 0.80002 0.90801 0.89041 0.90209 0.90161 0.83883 0.94065 0.90050 0.88542 0.89516 0.90704 0.92294 0.91837 0.91863 0.92373 0.92402 0.92041 0.91854 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.55 -14.65 7.78 -34.44 -0.27 -14.91 16 8 H 0.07 1.97 5.71 -52.49 -0.30 1.67 16 9 C 0.20 4.67 4.58 -4.97 -0.02 4.64 16 10 N -0.48 -9.76 3.43 -165.46 -0.57 -10.33 16 11 C 0.40 7.95 4.26 -154.74 -0.66 7.29 16 12 N -0.54 -10.85 7.33 -13.77 -0.10 -10.95 16 13 C 0.30 5.38 12.29 -92.32 -1.13 4.24 16 14 N -0.55 -9.75 10.29 -11.07 -0.11 -9.87 16 15 C 0.17 2.85 6.04 -82.52 -0.50 2.35 16 16 C -0.18 -3.25 5.44 -104.34 -0.57 -3.82 16 17 C -0.10 -1.53 4.12 -28.01 -0.12 -1.65 16 18 C 0.05 0.64 6.23 -3.88 -0.02 0.62 16 19 N -0.69 -8.22 6.79 -114.10 -0.77 -8.99 16 20 C 0.06 0.80 6.44 -3.98 -0.03 0.78 16 21 C -0.08 -1.04 5.35 -27.89 -0.15 -1.19 16 22 C 0.10 1.84 1.87 -66.60 -0.12 1.71 16 23 C -0.11 -1.88 5.21 -25.07 -0.13 -2.01 16 24 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 25 C -0.12 -1.69 6.83 -25.07 -0.17 -1.86 16 26 C -0.11 -1.95 5.97 -25.62 -0.15 -2.10 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.03 0.86 6.71 -51.93 -0.35 0.51 16 29 H 0.05 1.23 6.51 -51.93 -0.34 0.89 16 30 H 0.18 2.68 8.06 -52.48 -0.42 2.26 16 31 H 0.07 1.26 7.32 -51.93 -0.38 0.88 16 32 H 0.09 1.48 7.34 -51.93 -0.38 1.10 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.00 5.29 -51.93 -0.27 0.73 16 35 H 0.34 3.81 8.75 -39.29 -0.34 3.47 16 36 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.10 1.19 5.85 -51.93 -0.30 0.89 16 39 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 40 H 0.07 1.66 6.12 -51.93 -0.32 1.34 16 41 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 42 H 0.06 1.08 7.61 -51.93 -0.40 0.68 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.07 1.36 6.55 -51.93 -0.34 1.02 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -28.77 357.53 -12.23 -41.00 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -7.47 Total: 7.68 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -4.31 Total: -6.00 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.82 Total: -64.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.77 -12.23 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.587 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds