Wall clock time and date at job start Tue Mar 31 2020 11:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00132 * 2 1 4 4 H 1.48496 * 109.46711 * 269.99725 * 3 2 1 5 5 H 1.48496 * 109.46973 * 29.99463 * 3 2 1 6 6 H 1.48494 * 109.47079 * 149.99686 * 3 2 1 7 7 C 1.37879 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99987 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46738 * 180.95322 * 9 7 2 11 11 C 1.38539 * 110.99950 * 294.88457 * 10 9 7 12 12 N 1.32847 * 120.44017 * 98.55387 * 11 10 9 13 13 C 1.31759 * 120.56303 * 180.28318 * 12 11 10 14 14 N 1.31639 * 121.70233 * 358.79828 * 13 12 11 15 15 C 1.32999 * 121.20997 * 0.20639 * 14 13 12 16 16 C 1.37379 * 119.10210 * 1.64070 * 15 14 13 17 17 C 1.50521 * 123.18437 * 177.08406 * 16 15 14 18 18 C 1.52928 * 111.19323 * 29.36715 * 17 16 15 19 19 N 1.46859 * 108.32371 * 268.70212 * 18 17 16 20 20 C 1.46403 * 111.59400 * 61.07326 * 19 18 17 21 21 C 1.50451 * 118.78331 * 182.17845 * 15 14 13 22 22 C 1.46900 * 110.99894 * 58.84050 * 10 9 7 23 23 C 1.54272 * 110.02731 * 179.68757 * 22 10 9 24 24 C 1.54892 * 104.19488 * 217.10474 * 23 22 10 25 25 C 1.54893 * 102.74745 * 37.94287 * 24 23 22 26 26 C 1.53866 * 110.03491 * 62.52360 * 22 10 9 27 27 H 0.96997 * 119.99932 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47140 * 60.95049 * 9 7 2 29 29 H 1.08999 * 109.47119 * 300.95269 * 9 7 2 30 30 H 1.08005 * 119.14885 * 178.82136 * 13 12 11 31 31 H 1.09007 * 109.13285 * 268.93070 * 17 16 15 32 32 H 1.08997 * 109.09384 * 149.78109 * 17 16 15 33 33 H 1.08993 * 109.69322 * 148.99597 * 18 17 16 34 34 H 1.08998 * 109.69092 * 28.40864 * 18 17 16 35 35 H 1.00909 * 110.99632 * 296.68779 * 19 18 17 36 36 H 1.08997 * 109.79456 * 273.60253 * 20 19 18 37 37 H 1.08999 * 109.79161 * 152.74815 * 20 19 18 38 38 H 1.09001 * 109.23030 * 109.01607 * 21 15 14 39 39 H 1.09002 * 109.22681 * 349.64278 * 21 15 14 40 40 H 1.08992 * 110.01666 * 301.12606 * 22 10 9 41 41 H 1.08998 * 110.48853 * 335.78548 * 23 22 10 42 42 H 1.09000 * 110.48242 * 98.42804 * 23 22 10 43 43 H 1.09000 * 110.75456 * 279.62838 * 24 23 22 44 44 H 1.08996 * 110.91404 * 156.33250 * 24 23 22 45 45 H 1.08997 * 110.48275 * 203.38207 * 25 24 23 46 46 H 1.08995 * 110.48151 * 80.73781 * 25 24 23 47 47 H 1.09001 * 110.03350 * 238.56946 * 26 22 10 48 48 H 1.09004 * 110.03630 * 359.97438 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2054 -3.6156 0.0251 11 6 2.9581 -3.6498 -1.1375 12 7 4.1810 -3.1315 -1.1630 13 6 4.8968 -3.1577 -2.2689 14 7 4.4437 -3.7128 -3.3732 15 6 3.2368 -4.2694 -3.4197 16 6 2.4400 -4.2317 -2.3012 17 6 1.0367 -4.7753 -2.2706 18 6 0.8709 -5.9336 -3.2553 19 7 0.4200 -5.3856 -4.5410 20 6 1.3966 -4.4488 -5.0997 21 6 2.7933 -4.9321 -4.6956 22 6 3.0703 -3.5440 1.2104 23 6 4.0574 -4.7296 1.2166 24 6 4.1735 -5.1193 2.7111 25 6 2.7259 -4.9279 3.2278 26 6 2.2238 -3.6701 2.4890 27 1 -0.4850 0.8400 -0.0004 28 1 0.6368 -2.5649 -0.8964 29 1 0.6119 -2.5489 0.8833 30 1 5.8809 -2.7125 -2.2693 31 1 0.3396 -3.9798 -2.5341 32 1 0.8127 -5.1275 -1.2637 33 1 0.1292 -6.6358 -2.8749 34 1 1.8256 -6.4427 -3.3876 35 1 -0.4868 -4.9520 -4.4512 36 1 1.2211 -3.4503 -4.6993 37 1 1.3119 -4.4318 -6.1863 38 1 2.7715 -6.0122 -4.5504 39 1 3.5002 -4.6913 -5.4896 40 1 3.6177 -2.6015 1.2163 41 1 3.6586 -5.5610 0.6354 42 1 5.0271 -4.4206 0.8264 43 1 4.8609 -4.4526 3.2319 44 1 4.4882 -6.1572 2.8193 45 1 2.7241 -4.7637 4.3053 46 1 2.1122 -5.7914 2.9714 47 1 2.3610 -2.7891 3.1161 48 1 1.1711 -3.7841 2.2303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166534863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:33 Heat of formation + Delta-G solvation = 44.106518 kcal Electronic energy + Delta-G solvation = -28499.596961 eV Core-core repulsion = 24974.601257 eV Total energy + Delta-G solvation = -3524.995705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.50702 -40.01621 -38.87194 -36.90283 -34.93563 -34.02754 -33.20807 -31.75731 -29.86282 -29.05835 -28.54346 -27.32195 -26.42638 -24.88229 -23.24368 -22.67233 -21.64917 -21.25045 -20.42763 -18.81618 -18.59805 -17.77110 -17.52906 -17.12178 -16.59335 -16.31960 -16.03718 -15.69144 -15.26065 -15.09087 -14.93309 -14.67444 -14.49711 -14.19331 -14.04840 -13.74114 -13.34563 -13.24062 -13.05157 -12.78818 -12.64204 -12.53376 -12.43961 -12.32533 -12.20672 -12.00426 -11.91797 -11.81158 -11.77262 -11.62164 -11.44037 -11.37518 -11.01464 -10.68571 -10.11898 -10.10161 -9.36979 -9.28825 -8.27454 -6.40711 0.07745 0.19942 1.25804 1.28111 1.38130 2.28726 2.68742 2.95576 3.01986 3.13913 3.32971 3.42460 3.71275 3.81455 3.84178 3.88437 3.96225 4.08512 4.13996 4.23026 4.37263 4.51083 4.56211 4.62899 4.67239 4.70392 4.71277 4.78796 4.83009 4.87445 4.96902 4.97852 5.04183 5.05229 5.09515 5.17115 5.20157 5.25845 5.27342 5.30221 5.41377 5.47526 5.51666 5.66946 5.85926 5.97140 6.02077 6.29120 6.44441 6.45189 6.75937 7.26885 7.30043 8.77488 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.009504 B = 0.006459 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.394450 B = 4334.089361 C = 5615.503525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.216 3.784 10 N -0.474 5.474 11 C 0.369 3.631 12 N -0.561 5.561 13 C 0.288 3.712 14 N -0.550 5.550 15 C 0.168 3.832 16 C -0.192 4.192 17 C -0.090 4.090 18 C 0.063 3.937 19 N -0.685 5.685 20 C 0.068 3.932 21 C -0.073 4.073 22 C 0.095 3.905 23 C -0.103 4.103 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.113 4.113 27 H 0.265 0.735 28 H 0.011 0.989 29 H 0.030 0.970 30 H 0.211 0.789 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.349 0.651 36 H 0.012 0.988 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.372 -13.050 -3.351 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.078 0.922 9 C 0.092 3.908 10 N -0.193 5.193 11 C 0.130 3.870 12 N -0.280 5.280 13 C -0.002 4.002 14 N -0.266 5.266 15 C 0.025 3.975 16 C -0.198 4.198 17 C -0.130 4.130 18 C -0.067 4.067 19 N -0.315 5.315 20 C -0.062 4.062 21 C -0.111 4.111 22 C -0.013 4.013 23 C -0.141 4.141 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.151 4.151 27 H 0.074 0.926 28 H 0.029 0.971 29 H 0.048 0.952 30 H 0.227 0.773 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.167 0.833 36 H 0.031 0.969 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.047 -13.496 -3.631 14.860 hybrid contribution -0.232 2.955 0.744 3.057 sum 4.815 -10.541 -2.886 11.943 Atomic orbital electron populations 1.70016 1.07015 1.27769 1.50961 1.25609 0.95532 1.02092 0.94712 0.85739 0.78996 0.80101 0.78000 1.20826 1.20059 1.19605 1.22005 0.93749 0.92470 1.51017 0.92151 1.19443 0.89958 0.84695 0.96701 1.60168 1.16392 1.42835 0.99925 1.20354 0.88608 0.86764 0.91285 1.68572 1.09176 1.18450 1.31816 1.25096 0.99704 0.92266 0.83108 1.68392 1.15382 1.13467 1.29336 1.21624 0.88861 0.91964 0.95082 1.21041 1.00394 1.04546 0.93827 1.21018 0.90260 0.98679 1.03032 1.22266 1.02687 0.95171 0.86555 1.60507 1.05864 1.38797 1.26369 1.21944 0.90037 0.93090 1.01106 1.20829 0.97310 1.01069 0.91881 1.22090 0.92614 0.97912 0.88651 1.22302 0.97674 0.96172 0.97958 1.22428 0.96982 1.01879 0.93774 1.22286 0.96096 0.96635 0.99731 1.22114 0.99441 0.98607 0.94937 0.92579 0.97099 0.95156 0.77304 0.92828 0.90147 0.88129 0.89674 0.83295 0.96907 0.87597 0.86794 0.88325 0.94495 0.92732 0.92699 0.91285 0.89724 0.90266 0.91076 0.93018 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.36 13.29 21.45 0.28 -53.08 16 2 C 0.02 1.16 5.46 84.66 0.46 1.62 16 3 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 7 C -0.55 -30.59 7.78 25.60 0.20 -30.39 16 8 H 0.06 3.45 5.71 -2.91 -0.02 3.43 16 9 C 0.22 10.90 4.58 85.56 0.39 11.29 16 10 N -0.47 -20.02 3.43 -677.38 -2.33 -22.35 16 11 C 0.37 15.24 4.26 133.31 0.57 15.81 16 12 N -0.56 -23.03 7.33 -197.47 -1.45 -24.48 16 13 C 0.29 10.32 12.29 180.94 2.22 12.54 16 14 N -0.55 -19.08 10.29 -188.94 -1.94 -21.02 16 15 C 0.17 5.53 6.04 42.10 0.25 5.79 16 16 C -0.19 -6.96 5.44 -19.68 -0.11 -7.07 16 17 C -0.09 -2.82 4.12 29.77 0.12 -2.70 16 18 C 0.06 1.43 6.23 86.29 0.54 1.97 16 19 N -0.68 -14.83 6.79 -514.91 -3.50 -18.33 16 20 C 0.07 1.59 6.44 86.47 0.56 2.14 16 21 C -0.07 -1.78 5.35 29.84 0.16 -1.62 16 22 C 0.10 3.75 1.87 45.64 0.09 3.83 16 23 C -0.10 -3.36 5.21 31.67 0.17 -3.19 16 24 C -0.11 -2.88 6.91 31.89 0.22 -2.65 16 25 C -0.11 -2.90 6.83 31.67 0.22 -2.68 16 26 C -0.11 -4.01 5.97 31.32 0.19 -3.83 16 27 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.01 0.60 6.71 -2.39 -0.02 0.58 16 29 H 0.03 1.63 6.51 -2.39 -0.02 1.62 16 30 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 31 H 0.05 1.90 7.32 -2.38 -0.02 1.88 16 32 H 0.08 2.68 7.34 -2.39 -0.02 2.66 16 33 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 1.91 5.29 -2.39 -0.01 1.89 16 35 H 0.35 7.21 8.75 -89.69 -0.78 6.43 16 36 H 0.01 0.37 7.69 -2.39 -0.02 0.35 16 37 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.11 2.45 5.85 -2.39 -0.01 2.44 16 39 H 0.10 2.21 8.09 -2.39 -0.02 2.19 16 40 H 0.04 1.73 6.12 -2.39 -0.01 1.71 16 41 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 42 H 0.05 1.87 7.61 -2.39 -0.02 1.85 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.06 2.20 6.55 -2.38 -0.02 2.18 16 Total: -1.00 -63.97 357.53 -0.47 -64.44 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 0.19 Total: 26.86 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.24 Total: 0.86 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -8.93 Total: -139.26 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -63.97 -0.47 -64.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166534863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.548 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds