Wall clock time and date at job start Tue Mar 31 2020 12:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36354 * 120.07933 * 2 1 4 4 C 1.39549 * 120.15993 * 180.02562 * 3 2 1 5 5 N 1.38861 * 119.84058 * 179.97438 * 4 3 2 6 6 C 1.46497 * 119.99994 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47174 * 180.02562 * 6 5 4 8 8 C 1.53113 * 109.52598 * 294.87536 * 7 6 5 9 9 C 1.53043 * 109.27951 * 182.50387 * 8 7 6 10 10 N 1.46850 * 109.57257 * 59.08324 * 9 8 7 11 11 C 1.46898 * 110.99595 * 174.19714 * 10 9 8 12 12 C 1.53001 * 109.47071 * 304.20733 * 11 10 9 13 13 C 1.53001 * 109.47547 * 64.21230 * 11 10 9 14 14 C 1.46849 * 111.20081 * 298.29158 * 10 9 8 15 15 C 1.53036 * 109.51961 * 61.74345 * 14 10 9 16 16 C 1.39585 * 120.31655 * 359.97438 * 4 3 2 17 17 C 1.36322 * 120.15814 * 0.02565 * 16 4 3 18 18 C 1.40871 * 120.08254 * 180.02562 * 2 1 3 19 19 C 1.41133 * 120.15330 * 0.26892 * 18 2 1 20 20 H 1.08003 * 120.00522 * 329.36274 * 19 18 2 21 21 C 1.39866 * 119.99757 * 149.36806 * 19 18 2 22 22 N 1.30910 * 119.99943 * 162.13840 * 21 19 18 23 23 Si 1.86793 * 119.99927 * 342.13295 * 21 19 18 24 24 H 1.48501 * 109.47142 * 95.39342 * 23 21 19 25 25 H 1.48500 * 109.47271 * 215.39115 * 23 21 19 26 26 H 1.48491 * 109.47311 * 335.39411 * 23 21 19 27 27 H 1.08999 * 109.46467 * 269.97351 * 1 2 3 28 28 H 1.08999 * 109.47395 * 29.97101 * 1 2 3 29 29 H 1.08994 * 109.46871 * 149.97852 * 1 2 3 30 30 H 1.08004 * 119.91830 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00155 * 0.02562 * 5 4 3 32 32 H 1.09002 * 109.47626 * 300.00728 * 6 5 4 33 33 H 1.09005 * 109.46584 * 60.00195 * 6 5 4 34 34 H 1.08997 * 109.52166 * 55.00772 * 7 6 5 35 35 H 1.08999 * 109.50468 * 302.38443 * 8 7 6 36 36 H 1.09005 * 109.50347 * 62.49743 * 8 7 6 37 37 H 1.08999 * 109.40644 * 299.07365 * 9 8 7 38 38 H 1.08993 * 109.45605 * 179.13153 * 9 8 7 39 39 H 1.09002 * 109.46648 * 184.21171 * 11 10 9 40 40 H 1.09002 * 109.47026 * 60.00670 * 12 11 10 41 41 H 1.09007 * 109.46940 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.47486 * 300.00545 * 12 11 10 43 43 H 1.09000 * 109.46802 * 59.99858 * 13 11 10 44 44 H 1.08997 * 109.47156 * 179.97438 * 13 11 10 45 45 H 1.09000 * 109.46861 * 300.00142 * 13 11 10 46 46 H 1.09000 * 109.46439 * 301.72952 * 14 10 9 47 47 H 1.08991 * 109.46182 * 181.75375 * 14 10 9 48 48 H 1.08997 * 109.50333 * 180.87850 * 15 14 10 49 49 H 1.09000 * 109.50839 * 60.75852 * 15 14 10 50 50 H 1.08003 * 119.91978 * 180.02562 * 16 4 3 51 51 H 1.08000 * 120.08040 * 179.97438 * 17 16 4 52 52 H 0.96996 * 119.99912 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1819 -0.0005 5 7 4.2752 2.3873 -0.0011 6 6 5.7402 2.3935 -0.0022 7 6 6.2441 3.8381 -0.0020 8 6 5.8386 4.5218 -1.3105 9 6 6.3987 5.9459 -1.3313 10 7 7.8618 5.9008 -1.2132 11 6 8.4438 7.2407 -1.3677 12 6 7.9934 7.8419 -2.7006 13 6 7.9741 8.1363 -0.2196 14 6 8.2734 5.2916 0.0579 15 6 7.7706 3.8475 0.1194 16 6 4.2923 -0.0221 -0.0005 17 6 3.6221 -1.2092 -0.0005 18 6 2.2132 -1.2190 -0.0005 19 6 1.5126 -2.4441 -0.0068 20 1 0.5440 -2.5148 0.4657 21 6 2.0727 -3.5668 -0.6249 22 7 1.6194 -4.7626 -0.3448 23 14 3.4675 -3.3600 -1.8501 24 1 4.7674 -3.5438 -1.1560 25 1 3.3341 -4.3730 -2.9276 26 1 3.4099 -1.9987 -2.4405 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6504 2.1152 0.0004 31 1 3.7867 3.2254 -0.0007 32 1 6.1065 1.8811 0.8874 33 1 6.1049 1.8812 -0.8926 34 1 5.8085 4.3757 0.8402 35 1 6.2411 3.9611 -2.1541 36 1 4.7514 4.5563 -1.3814 37 1 5.9842 6.5104 -0.4961 38 1 6.1247 6.4301 -2.2685 39 1 9.5313 7.1685 -1.3507 40 1 6.9059 7.9140 -2.7176 41 1 8.4249 8.8363 -2.8150 42 1 8.3280 7.2038 -3.5186 43 1 8.2951 7.7080 0.7300 44 1 8.4064 9.1304 -0.3340 45 1 6.8867 8.2084 -0.2365 46 1 7.8501 5.8591 0.8866 47 1 9.3609 5.3007 0.1296 48 1 8.0629 3.4005 1.0695 49 1 8.2043 3.2758 -0.7011 50 1 5.3723 -0.0131 -0.0005 51 1 4.1699 -2.1400 -0.0010 52 1 2.0081 -5.5412 -0.7731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166622523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:03 Heat of formation + Delta-G solvation = 6.698532 kcal Electronic energy + Delta-G solvation = -26478.254137 eV Core-core repulsion = 23055.176644 eV Total energy + Delta-G solvation = -3423.077493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.92954 -38.38806 -36.57376 -34.50062 -32.99881 -31.49074 -31.08225 -30.90889 -29.09419 -27.59979 -26.77916 -25.64790 -23.75708 -23.49258 -22.40594 -21.38870 -20.55132 -19.41197 -19.07291 -17.31368 -16.67523 -16.05114 -15.41798 -15.20356 -14.92455 -14.91821 -14.53652 -14.38345 -13.87685 -13.77593 -13.40246 -13.27364 -13.07746 -12.69452 -12.66253 -12.43768 -12.40596 -12.31033 -12.10286 -11.92850 -11.76689 -11.61799 -11.40336 -11.36505 -11.05017 -11.03112 -10.84210 -10.68944 -10.65019 -10.42781 -10.27832 -10.15704 -9.77131 -9.39732 -9.09590 -8.58774 -8.51341 -7.54917 -6.72515 -6.53352 -4.11811 2.70672 2.85463 3.23182 3.32598 3.45142 3.60402 4.14369 4.16373 4.46803 4.57002 4.64241 4.67854 4.74012 4.82006 4.94640 5.06508 5.12750 5.15991 5.25151 5.34565 5.37139 5.45063 5.52309 5.52499 5.56358 5.61879 5.63524 5.79029 5.84022 5.86184 5.91755 5.97863 6.03102 6.07083 6.08149 6.13637 6.34369 6.34809 6.49126 6.65554 6.71765 6.87358 6.87831 6.92435 7.00978 7.19922 7.30999 7.53087 7.69193 7.96980 8.14526 8.36596 8.53597 8.62084 8.89852 9.03742 10.31578 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002493 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.998299 B =11228.512684 C =11718.113872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.139 4.139 3 C -0.146 4.146 4 C 0.099 3.901 5 N -0.759 5.759 6 C 0.143 3.857 7 C -0.097 4.097 8 C -0.109 4.109 9 C 0.050 3.950 10 N -0.531 5.531 11 C 0.075 3.925 12 C -0.148 4.148 13 C -0.188 4.188 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.149 4.149 17 C -0.195 4.195 18 C 0.059 3.941 19 C -0.451 4.451 20 H 0.088 0.912 21 C 0.082 3.918 22 N -0.825 5.825 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.246 1.246 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.384 0.616 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.035 0.965 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.099 0.901 52 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.618 22.118 -1.623 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C -0.168 4.168 4 C 0.001 3.999 5 N -0.395 5.395 6 C 0.018 3.982 7 C -0.115 4.115 8 C -0.147 4.147 9 C -0.078 4.078 10 N -0.255 5.255 11 C -0.033 4.033 12 C -0.205 4.205 13 C -0.247 4.247 14 C -0.072 4.072 15 C -0.148 4.148 16 C -0.171 4.171 17 C -0.214 4.214 18 C 0.056 3.944 19 C -0.481 4.481 20 H 0.106 0.894 21 C -0.133 4.133 22 N -0.452 5.452 23 Si 0.733 3.267 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.169 1.169 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.217 0.783 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.092 0.908 50 H 0.110 0.890 51 H 0.117 0.883 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.926 21.446 -2.023 25.122 hybrid contribution 0.247 0.706 0.223 0.781 sum 13.174 22.153 -1.800 25.836 Atomic orbital electron populations 1.20468 0.93056 1.00924 1.00156 1.19345 0.94563 0.92340 1.07849 1.19797 0.91589 0.96692 1.08761 1.17279 0.90602 0.85219 1.06787 1.43874 1.03525 1.05036 1.87079 1.21046 0.82202 0.94737 1.00226 1.21382 0.95754 0.96282 0.98127 1.21622 1.00275 0.94868 0.97930 1.22199 0.87309 0.97384 1.00898 1.62192 1.09501 1.19821 1.34014 1.21696 0.99468 0.87389 0.94737 1.21919 1.01545 1.00279 0.96795 1.22494 1.01944 1.00606 0.99633 1.22075 1.00054 0.95062 0.89971 1.21568 0.94783 0.95996 1.02423 1.19939 0.97257 0.91750 1.08130 1.20618 0.94644 0.95899 1.10283 1.17507 0.91046 0.92792 0.93054 1.19242 1.05373 0.91553 1.31927 0.89384 1.26046 0.96535 0.94341 0.96406 1.69741 1.39666 0.98996 1.36788 0.86402 0.80660 0.79438 0.80191 1.20092 1.22270 1.16939 0.93558 0.94224 0.91404 0.89016 0.78265 0.93547 0.93376 0.91335 0.90958 0.91333 0.94907 0.90411 0.90079 0.92380 0.92349 0.91736 0.92431 0.92178 0.92406 0.94689 0.90934 0.91318 0.90796 0.89000 0.88302 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.41 36.01 0.34 -1.49 16 2 C -0.14 -3.25 5.90 -104.30 -0.62 -3.86 16 3 C -0.15 -3.09 9.46 -39.77 -0.38 -3.47 16 4 C 0.10 2.02 6.67 -83.69 -0.56 1.46 16 5 N -0.76 -12.21 5.45 -58.50 -0.32 -12.53 16 6 C 0.14 1.97 4.29 -4.04 -0.02 1.95 16 7 C -0.10 -1.02 2.29 -90.50 -0.21 -1.23 16 8 C -0.11 -1.12 5.22 -26.65 -0.14 -1.26 16 9 C 0.05 0.45 4.67 -3.83 -0.02 0.43 16 10 N -0.53 -4.71 4.68 -226.69 -1.06 -5.77 16 11 C 0.08 0.56 3.02 -67.71 -0.20 0.35 16 12 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 13 C -0.19 -1.28 8.51 37.16 0.32 -0.96 16 14 C 0.06 0.48 4.89 -3.83 -0.02 0.46 16 15 C -0.11 -1.03 5.38 -26.65 -0.14 -1.17 16 16 C -0.15 -3.30 9.23 -39.77 -0.37 -3.67 16 17 C -0.19 -4.83 7.09 -39.27 -0.28 -5.11 16 18 C 0.06 1.54 5.09 -106.80 -0.54 0.99 16 19 C -0.45 -12.44 8.50 -37.87 -0.32 -12.76 16 20 H 0.09 2.53 7.23 -52.48 -0.38 2.15 16 21 C 0.08 2.24 5.40 -17.34 -0.09 2.15 16 22 N -0.83 -22.90 13.93 55.54 0.77 -22.13 16 23 Si 0.91 21.73 24.52 -169.99 -4.17 17.56 16 24 H -0.27 -6.42 6.71 56.52 0.38 -6.04 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.25 -6.06 6.86 56.52 0.39 -5.67 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 1.46 6.85 -51.93 -0.36 1.10 16 30 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.38 5.49 7.68 -40.82 -0.31 5.17 16 32 H 0.05 0.67 7.92 -51.93 -0.41 0.26 16 33 H 0.05 0.71 7.93 -51.93 -0.41 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.72 7.26 -51.93 -0.38 0.35 16 37 H 0.03 0.30 6.71 -51.93 -0.35 -0.05 16 38 H 0.08 0.67 5.90 -51.93 -0.31 0.36 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.40 6.22 -51.93 -0.32 0.08 16 41 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.40 6.54 -51.93 -0.34 0.06 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.42 6.63 -51.93 -0.34 0.08 16 46 H 0.03 0.30 6.63 -51.93 -0.34 -0.04 16 47 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.09 1.85 6.68 -52.48 -0.35 1.50 16 51 H 0.10 2.48 4.79 -52.49 -0.25 2.23 16 52 H 0.28 7.10 8.30 -40.82 -0.34 6.76 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -28.33 383.93 -11.00 -39.34 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -9.10 Total: 5.59 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: -2.92 Total: -27.84 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: -0.61 Total: -40.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.17 Total: 17.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.33 -11.00 -39.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166622523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.035 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds