Wall clock time and date at job start Tue Mar 31 2020 12:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36354 * 120.07933 * 2 1 4 4 C 1.39549 * 120.15993 * 180.02562 * 3 2 1 5 5 N 1.38861 * 119.84058 * 179.97438 * 4 3 2 6 6 C 1.46497 * 119.99994 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47174 * 180.02562 * 6 5 4 8 8 C 1.53113 * 109.52598 * 294.87536 * 7 6 5 9 9 C 1.53043 * 109.27951 * 182.50387 * 8 7 6 10 10 N 1.46850 * 109.57257 * 59.08324 * 9 8 7 11 11 C 1.46898 * 110.99595 * 174.19714 * 10 9 8 12 12 C 1.53001 * 109.47071 * 304.20733 * 11 10 9 13 13 C 1.53001 * 109.47547 * 64.21230 * 11 10 9 14 14 C 1.46849 * 111.20081 * 298.29158 * 10 9 8 15 15 C 1.53036 * 109.51961 * 61.74345 * 14 10 9 16 16 C 1.39585 * 120.31655 * 359.97438 * 4 3 2 17 17 C 1.36322 * 120.15814 * 0.02565 * 16 4 3 18 18 C 1.40871 * 120.08254 * 180.02562 * 2 1 3 19 19 C 1.41133 * 120.15330 * 0.26892 * 18 2 1 20 20 H 1.08003 * 120.00522 * 329.36274 * 19 18 2 21 21 C 1.39866 * 119.99757 * 149.36806 * 19 18 2 22 22 N 1.30910 * 119.99943 * 162.13840 * 21 19 18 23 23 Si 1.86793 * 119.99927 * 342.13295 * 21 19 18 24 24 H 1.48501 * 109.47142 * 95.39342 * 23 21 19 25 25 H 1.48500 * 109.47271 * 215.39115 * 23 21 19 26 26 H 1.48491 * 109.47311 * 335.39411 * 23 21 19 27 27 H 1.08999 * 109.46467 * 269.97351 * 1 2 3 28 28 H 1.08999 * 109.47395 * 29.97101 * 1 2 3 29 29 H 1.08994 * 109.46871 * 149.97852 * 1 2 3 30 30 H 1.08004 * 119.91830 * 0.02562 * 3 2 1 31 31 H 0.97001 * 120.00155 * 0.02562 * 5 4 3 32 32 H 1.09002 * 109.47626 * 300.00728 * 6 5 4 33 33 H 1.09005 * 109.46584 * 60.00195 * 6 5 4 34 34 H 1.08997 * 109.52166 * 55.00772 * 7 6 5 35 35 H 1.08999 * 109.50468 * 302.38443 * 8 7 6 36 36 H 1.09005 * 109.50347 * 62.49743 * 8 7 6 37 37 H 1.08999 * 109.40644 * 299.07365 * 9 8 7 38 38 H 1.08993 * 109.45605 * 179.13153 * 9 8 7 39 39 H 1.09002 * 109.46648 * 184.21171 * 11 10 9 40 40 H 1.09002 * 109.47026 * 60.00670 * 12 11 10 41 41 H 1.09007 * 109.46940 * 179.97438 * 12 11 10 42 42 H 1.09002 * 109.47486 * 300.00545 * 12 11 10 43 43 H 1.09000 * 109.46802 * 59.99858 * 13 11 10 44 44 H 1.08997 * 109.47156 * 179.97438 * 13 11 10 45 45 H 1.09000 * 109.46861 * 300.00142 * 13 11 10 46 46 H 1.09000 * 109.46439 * 301.72952 * 14 10 9 47 47 H 1.08991 * 109.46182 * 181.75375 * 14 10 9 48 48 H 1.08997 * 109.50333 * 180.87850 * 15 14 10 49 49 H 1.09000 * 109.50839 * 60.75852 * 15 14 10 50 50 H 1.08003 * 119.91978 * 180.02562 * 16 4 3 51 51 H 1.08000 * 120.08040 * 179.97438 * 17 16 4 52 52 H 0.96996 * 119.99912 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5860 1.1819 -0.0005 5 7 4.2752 2.3873 -0.0011 6 6 5.7402 2.3935 -0.0022 7 6 6.2441 3.8381 -0.0020 8 6 5.8386 4.5218 -1.3105 9 6 6.3987 5.9459 -1.3313 10 7 7.8618 5.9008 -1.2132 11 6 8.4438 7.2407 -1.3677 12 6 7.9934 7.8419 -2.7006 13 6 7.9741 8.1363 -0.2196 14 6 8.2734 5.2916 0.0579 15 6 7.7706 3.8475 0.1194 16 6 4.2923 -0.0221 -0.0005 17 6 3.6221 -1.2092 -0.0005 18 6 2.2132 -1.2190 -0.0005 19 6 1.5126 -2.4441 -0.0068 20 1 0.5440 -2.5148 0.4657 21 6 2.0727 -3.5668 -0.6249 22 7 1.6194 -4.7626 -0.3448 23 14 3.4675 -3.3600 -1.8501 24 1 4.7674 -3.5438 -1.1560 25 1 3.3341 -4.3730 -2.9276 26 1 3.4099 -1.9987 -2.4405 27 1 -0.3632 -0.0005 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 1.6504 2.1152 0.0004 31 1 3.7867 3.2254 -0.0007 32 1 6.1065 1.8811 0.8874 33 1 6.1049 1.8812 -0.8926 34 1 5.8085 4.3757 0.8402 35 1 6.2411 3.9611 -2.1541 36 1 4.7514 4.5563 -1.3814 37 1 5.9842 6.5104 -0.4961 38 1 6.1247 6.4301 -2.2685 39 1 9.5313 7.1685 -1.3507 40 1 6.9059 7.9140 -2.7176 41 1 8.4249 8.8363 -2.8150 42 1 8.3280 7.2038 -3.5186 43 1 8.2951 7.7080 0.7300 44 1 8.4064 9.1304 -0.3340 45 1 6.8867 8.2084 -0.2365 46 1 7.8501 5.8591 0.8866 47 1 9.3609 5.3007 0.1296 48 1 8.0629 3.4005 1.0695 49 1 8.2043 3.2758 -0.7011 50 1 5.3723 -0.0131 -0.0005 51 1 4.1699 -2.1400 -0.0010 52 1 2.0081 -5.5412 -0.7731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166622523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:02 Heat of formation + Delta-G solvation = -9.079608 kcal Electronic energy + Delta-G solvation = -26478.938328 eV Core-core repulsion = 23055.176644 eV Total energy + Delta-G solvation = -3423.761685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.71637 -40.02833 -37.69068 -35.84606 -34.73880 -33.01996 -32.23334 -31.78840 -30.54080 -28.32727 -28.12275 -26.92857 -25.45168 -24.30306 -23.43994 -23.07087 -21.36572 -20.73922 -20.12875 -19.23865 -17.94580 -17.11744 -16.70197 -16.60119 -16.11619 -15.75410 -15.62152 -15.37565 -15.14895 -15.00058 -14.63594 -14.44278 -14.34953 -14.20858 -13.99139 -13.84530 -13.56796 -13.32207 -13.19706 -13.04883 -12.79630 -12.71192 -12.59668 -12.57702 -12.38388 -12.25301 -12.01319 -11.97701 -11.67912 -11.63291 -11.60496 -11.31852 -11.20343 -11.10917 -10.92849 -10.31513 -9.33054 -9.15767 -8.72925 -8.24145 -6.11248 0.88483 0.99987 1.29068 1.42889 1.52043 2.19633 2.74008 2.84627 2.97518 3.60967 3.75807 3.81364 3.89247 4.02891 4.17707 4.28241 4.33124 4.35685 4.38403 4.42191 4.43372 4.60426 4.62149 4.64753 4.73011 4.76524 4.79497 4.80765 4.89409 4.91467 4.96446 4.99008 5.00480 5.03241 5.06491 5.10266 5.17234 5.23263 5.25426 5.27808 5.33655 5.37708 5.39967 5.49491 5.53880 5.75614 5.86251 6.08766 6.22223 6.25042 6.32114 6.48326 6.71717 6.95542 7.04044 7.24843 8.36945 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.002493 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.998299 B =11228.512684 C =11718.113872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.141 4.141 3 C -0.156 4.156 4 C 0.129 3.871 5 N -0.746 5.746 6 C 0.141 3.859 7 C -0.085 4.085 8 C -0.106 4.106 9 C 0.055 3.945 10 N -0.542 5.542 11 C 0.074 3.926 12 C -0.145 4.145 13 C -0.183 4.183 14 C 0.059 3.941 15 C -0.107 4.107 16 C -0.168 4.168 17 C -0.201 4.201 18 C 0.022 3.978 19 C -0.476 4.476 20 H 0.057 0.943 21 C 0.042 3.958 22 N -0.871 5.871 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.257 1.257 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.046 0.954 30 H 0.126 0.874 31 H 0.398 0.602 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.038 0.962 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.065 0.935 50 H 0.112 0.888 51 H 0.089 0.911 52 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.324 25.814 -1.861 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C -0.178 4.178 4 C 0.028 3.972 5 N -0.381 5.381 6 C 0.016 3.984 7 C -0.104 4.104 8 C -0.144 4.144 9 C -0.073 4.073 10 N -0.267 5.267 11 C -0.034 4.034 12 C -0.203 4.203 13 C -0.241 4.241 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.191 4.191 17 C -0.221 4.221 18 C 0.019 3.981 19 C -0.507 4.507 20 H 0.075 0.925 21 C -0.169 4.169 22 N -0.500 5.500 23 Si 0.784 3.216 24 H -0.193 1.193 25 H -0.211 1.211 26 H -0.181 1.181 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.144 0.856 31 H 0.233 0.767 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.084 0.916 50 H 0.130 0.870 51 H 0.107 0.893 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.654 25.192 -2.257 29.232 hybrid contribution -0.209 -0.122 0.354 0.429 sum 14.445 25.070 -1.904 28.996 Atomic orbital electron populations 1.20467 0.91487 1.01496 1.00887 1.19767 0.96111 0.92319 1.06115 1.20115 0.92018 0.97269 1.08368 1.17479 0.90836 0.86288 1.02573 1.43970 1.04705 1.04141 1.85254 1.21193 0.80502 0.96972 0.99754 1.21280 0.96545 0.94026 0.98509 1.21578 1.00179 0.95545 0.97108 1.22123 0.87523 0.96395 1.01249 1.62195 1.09370 1.20872 1.34246 1.21751 0.99566 0.86825 0.95274 1.21896 1.01452 1.00750 0.96160 1.22436 1.01578 1.00970 0.99161 1.22053 1.00564 0.94293 0.89983 1.21547 0.93705 0.96740 1.02522 1.20135 0.98438 0.91506 1.09016 1.20681 0.94374 0.96678 1.10383 1.17669 0.91805 0.93156 0.95462 1.19207 1.04798 0.93179 1.33533 0.92475 1.26642 0.98595 0.94027 0.97620 1.69782 1.41825 0.99611 1.38804 0.85579 0.78700 0.78733 0.78567 1.19258 1.21149 1.18076 0.92688 0.90956 0.93448 0.85579 0.76658 0.93668 0.94087 0.90755 0.92337 0.91431 0.94609 0.90054 0.89810 0.92558 0.91122 0.92531 0.92622 0.91210 0.92907 0.94382 0.90114 0.90578 0.91608 0.87007 0.89286 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.48 9.41 71.24 0.67 -2.81 16 2 C -0.14 -6.47 5.90 -19.66 -0.12 -6.59 16 3 C -0.16 -6.11 9.46 22.15 0.21 -5.90 16 4 C 0.13 4.90 6.67 38.67 0.26 5.15 16 5 N -0.75 -21.30 5.45 -338.99 -1.85 -23.15 16 6 C 0.14 3.44 4.29 86.38 0.37 3.81 16 7 C -0.08 -1.54 2.29 -10.71 -0.02 -1.56 16 8 C -0.11 -1.90 5.22 30.65 0.16 -1.74 16 9 C 0.05 0.84 4.67 86.33 0.40 1.25 16 10 N -0.54 -8.27 4.68 -871.12 -4.08 -12.35 16 11 C 0.07 0.91 3.02 44.92 0.14 1.05 16 12 C -0.15 -1.63 8.84 71.98 0.64 -0.99 16 13 C -0.18 -1.99 8.51 71.98 0.61 -1.38 16 14 C 0.06 0.84 4.89 86.32 0.42 1.27 16 15 C -0.11 -1.73 5.38 30.65 0.16 -1.56 16 16 C -0.17 -7.18 9.23 22.15 0.20 -6.98 16 17 C -0.20 -9.98 7.09 22.47 0.16 -9.82 16 18 C 0.02 1.17 5.09 -21.27 -0.11 1.06 16 19 C -0.48 -27.53 8.50 23.38 0.20 -27.33 16 20 H 0.06 3.52 7.23 -2.91 -0.02 3.50 16 21 C 0.04 2.36 5.40 85.22 0.46 2.83 16 22 N -0.87 -50.63 13.93 21.82 0.30 -50.33 16 23 Si 0.96 45.99 24.52 68.60 1.68 47.67 16 24 H -0.27 -12.26 6.71 99.48 0.67 -11.59 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.26 -12.58 6.86 99.48 0.68 -11.89 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 29 H 0.05 2.08 6.85 -2.39 -0.02 2.07 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.40 9.63 7.68 -92.71 -0.71 8.92 16 32 H 0.05 1.16 7.92 -2.39 -0.02 1.15 16 33 H 0.04 1.11 7.93 -2.38 -0.02 1.09 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.21 7.26 -2.38 -0.02 1.20 16 37 H 0.04 0.54 6.71 -2.39 -0.02 0.52 16 38 H 0.08 1.20 5.90 -2.39 -0.01 1.19 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 0.65 6.22 -2.39 -0.01 0.63 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.05 0.63 6.54 -2.39 -0.02 0.61 16 44 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.05 0.63 6.63 -2.39 -0.02 0.62 16 46 H 0.04 0.53 6.63 -2.39 -0.02 0.52 16 47 H 0.08 1.04 8.12 -2.39 -0.02 1.02 16 48 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.11 4.26 6.68 -2.91 -0.02 4.24 16 51 H 0.09 4.51 4.79 -2.91 -0.01 4.50 16 52 H 0.29 15.11 8.30 -92.71 -0.77 14.34 16 Total: -1.00 -62.84 383.93 1.00 -61.85 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.12 Total: 26.57 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 4.82 Total: -50.25 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -5.62 Total: -85.83 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.68 Total: 47.67 kcal Total: -62.84 1.00 -61.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166622523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.766 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds