Wall clock time and date at job start Tue Mar 31 2020 11:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38133 * 120.35011 * 2 1 4 4 C 1.39643 * 118.49007 * 179.97438 * 3 2 1 5 5 N 1.38533 * 120.48591 * 180.02562 * 4 3 2 6 6 C 1.48522 * 111.00048 * 62.58000 * 5 4 3 7 7 C 1.54936 * 103.22788 * 159.72036 * 6 5 4 8 8 C 1.54598 * 102.92318 * 322.58639 * 7 6 5 9 9 C 1.47908 * 110.99825 * 179.97438 * 5 4 3 10 10 N 1.32930 * 119.02637 * 359.97438 * 4 3 2 11 11 C 1.32438 * 120.61443 * 0.02562 * 10 4 3 12 12 N 1.38403 * 119.17668 * 179.97438 * 11 10 4 13 13 C 1.46854 * 110.99619 * 303.95205 * 12 11 10 14 14 C 1.53037 * 109.51886 * 185.84376 * 13 12 11 15 15 C 1.53126 * 109.27801 * 300.81620 * 14 13 12 16 16 C 1.53124 * 109.15878 * 57.65645 * 15 14 13 17 17 H 1.08999 * 109.50059 * 62.28737 * 16 15 14 18 18 C 1.50696 * 109.50007 * 182.40592 * 16 15 14 19 19 H 1.07997 * 120.00547 * 0.02562 * 18 16 15 20 20 C 1.37876 * 119.99728 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00108 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00080 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47088 * 59.99637 * 22 20 18 24 24 H 1.48497 * 109.46973 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46726 * 299.99288 * 22 20 18 26 26 C 1.46844 * 111.00167 * 68.15905 * 12 11 10 27 27 N 1.32481 * 120.35799 * 180.25491 * 2 1 3 28 28 H 1.09007 * 109.47162 * 90.00325 * 1 2 3 29 29 H 1.09002 * 109.46794 * 209.99114 * 1 2 3 30 30 H 1.08990 * 109.47727 * 330.00074 * 1 2 3 31 31 H 1.08002 * 120.75629 * 359.97438 * 3 2 1 32 32 H 1.09003 * 110.67127 * 278.15517 * 6 5 4 33 33 H 1.09000 * 110.67337 * 41.28768 * 6 5 4 34 34 H 1.09002 * 110.72825 * 204.22561 * 7 6 5 35 35 H 1.09005 * 110.87713 * 81.01408 * 7 6 5 36 36 H 1.09002 * 110.30759 * 263.04085 * 8 7 6 37 37 H 1.08994 * 110.39462 * 140.91076 * 8 7 6 38 38 H 1.08993 * 109.91502 * 333.50756 * 9 5 4 39 39 H 1.08994 * 109.91503 * 94.79754 * 9 5 4 40 40 H 1.08994 * 109.46310 * 65.82602 * 13 12 11 41 41 H 1.09004 * 109.45830 * 305.85289 * 13 12 11 42 42 H 1.09000 * 109.50480 * 180.88135 * 14 13 12 43 43 H 1.09002 * 109.53848 * 60.77851 * 14 13 12 44 44 H 1.08998 * 109.52297 * 177.56592 * 15 14 13 45 45 H 1.08999 * 109.51925 * 297.75795 * 15 14 13 46 46 H 0.96997 * 120.00064 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.46133 * 294.17885 * 26 12 11 48 48 H 1.09002 * 109.46165 * 54.15524 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1920 0.0000 4 6 3.6006 1.1467 0.0005 5 7 4.3418 2.3171 0.0011 6 6 4.0867 3.1081 1.2320 7 6 5.3218 4.0396 1.3171 8 6 6.4740 3.1316 0.8292 9 6 5.7920 2.0260 0.0022 10 7 4.2076 -0.0360 0.0016 11 6 3.5015 -1.1564 0.0016 12 7 4.1641 -2.3715 0.0021 13 6 5.0887 -2.4671 -1.1348 14 6 5.6928 -3.8723 -1.1858 15 6 6.4347 -4.1515 0.1244 16 6 5.4607 -3.9978 1.2959 17 1 4.6617 -4.7334 1.2037 18 6 6.1966 -4.2130 2.5933 19 1 7.2531 -4.4365 2.5843 20 6 5.5209 -4.1245 3.7919 21 7 4.2344 -3.8518 3.8030 22 14 6.4331 -4.3905 5.4002 23 1 7.5190 -3.3855 5.5254 24 1 5.4879 -4.2415 6.5358 25 1 7.0174 -5.7556 5.4179 26 6 4.8633 -2.5891 1.2749 27 7 2.1765 -1.1431 -0.0051 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6831 2.1376 -0.0004 32 1 3.1712 3.6913 1.1317 33 1 4.0354 2.4566 2.1044 34 1 5.4926 4.3609 2.3447 35 1 5.2047 4.9011 0.6596 36 1 7.0000 2.6979 1.6797 37 1 7.1659 3.6979 0.2059 38 1 5.9752 1.0538 0.4595 39 1 6.1737 2.0370 -1.0186 40 1 5.8858 -1.7331 -1.0174 41 1 4.5476 -2.2707 -2.0604 42 1 6.3909 -3.9383 -2.0203 43 1 4.8978 -4.6063 -1.3174 44 1 6.8299 -5.1672 0.1099 45 1 7.2546 -3.4421 0.2369 46 1 3.7589 -3.7899 4.6462 47 1 5.6615 -1.8544 1.3810 48 1 4.1586 -2.4813 2.0995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166739997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:28 Heat of formation + Delta-G solvation = 68.682623 kcal Electronic energy + Delta-G solvation = -27612.580267 eV Core-core repulsion = 24088.650262 eV Total energy + Delta-G solvation = -3523.930005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14824 -39.03604 -37.83069 -34.35382 -33.88056 -32.67044 -31.07932 -29.98751 -29.55102 -29.26445 -27.76093 -24.98178 -24.33674 -23.28488 -21.84826 -21.38501 -20.91174 -20.67065 -18.65505 -17.48941 -17.21784 -16.39924 -15.92438 -15.51384 -15.18721 -14.99998 -14.47621 -14.12866 -13.86492 -13.68732 -13.43202 -13.32222 -12.96559 -12.75715 -12.63427 -12.47039 -12.41315 -12.09863 -12.05795 -11.79655 -11.53017 -11.34293 -10.96502 -10.79556 -10.73676 -10.68454 -10.48897 -10.24505 -10.22165 -10.14142 -9.63797 -9.40430 -9.03069 -9.02035 -8.85948 -8.45868 -8.34381 -7.76137 -5.99943 -4.07373 1.21298 1.37977 3.30520 3.35662 3.37859 3.46292 3.83918 4.01233 4.30480 4.42276 4.44976 4.67747 4.79333 5.02766 5.08767 5.18921 5.27385 5.31239 5.35164 5.39809 5.51189 5.58938 5.62446 5.64044 5.68076 5.69254 5.75599 5.80958 5.89485 5.93503 6.03486 6.12342 6.19413 6.32246 6.40449 6.46391 6.54954 6.69451 6.74444 6.91651 6.97383 7.08579 7.11422 7.37046 7.58655 7.70162 7.93241 7.99336 8.12274 8.44710 8.64757 8.97395 9.57438 11.05381 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004657 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.643194 B = 6011.078083 C = 6638.818685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.192 3.808 3 C -0.258 4.258 4 C 0.353 3.647 5 N -0.462 5.462 6 C 0.045 3.955 7 C -0.122 4.122 8 C -0.133 4.133 9 C 0.034 3.966 10 N -0.578 5.578 11 C 0.536 3.464 12 N -0.478 5.478 13 C 0.074 3.926 14 C -0.114 4.114 15 C -0.112 4.112 16 C 0.055 3.945 17 H 0.038 0.962 18 C -0.515 4.515 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.891 3.109 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.079 3.921 27 N -0.511 5.511 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.261 0.739 47 H 0.020 0.980 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 14.865 -7.590 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.046 3.954 3 C -0.283 4.283 4 C 0.111 3.889 5 N -0.181 5.181 6 C -0.081 4.081 7 C -0.160 4.160 8 C -0.171 4.171 9 C -0.093 4.093 10 N -0.303 5.303 11 C 0.181 3.819 12 N -0.204 5.204 13 C -0.053 4.053 14 C -0.152 4.152 15 C -0.150 4.150 16 C 0.036 3.964 17 H 0.056 0.944 18 C -0.553 4.553 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.524 5.524 22 Si 0.718 3.282 23 H -0.204 1.204 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.045 4.045 27 N -0.229 5.229 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.071 0.929 47 H 0.039 0.961 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.751 13.954 -7.969 16.303 hybrid contribution 0.811 0.940 1.525 1.966 sum -1.940 14.894 -6.444 16.344 Atomic orbital electron populations 1.20726 0.87984 1.03877 1.03317 1.21483 0.97340 0.87423 0.89150 1.21994 0.93657 1.00431 1.12182 1.20071 0.90605 0.88691 0.89519 1.61801 1.07152 1.13608 1.35497 1.23302 0.99892 0.95414 0.89471 1.22499 0.93727 0.97934 1.01848 1.22449 0.97949 0.96677 1.00017 1.22902 0.84855 0.99937 1.01591 1.68576 1.42579 0.98910 1.20253 1.21210 0.86672 0.87693 0.86352 1.59578 1.31435 1.22482 1.06884 1.21947 0.93757 0.97981 0.91650 1.21615 0.99354 0.95751 0.98461 1.21695 0.98611 1.00072 0.94590 1.18699 0.93773 0.92001 0.91895 0.94372 1.21126 0.95519 1.48189 0.90502 0.92435 1.25026 0.94815 0.95008 0.99132 1.69878 1.07656 1.48464 1.26382 0.86681 0.79529 0.78822 0.83135 1.20378 1.21314 1.20113 1.22559 0.96427 0.99364 0.86189 1.68049 1.08894 1.29442 1.16551 0.89974 0.89728 0.90484 0.84189 0.89164 0.92457 0.90446 0.90442 0.90985 0.90773 0.89583 0.90128 0.94035 0.92661 0.92657 0.91526 0.92961 0.93541 0.92868 0.96146 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.15 10.21 36.00 0.37 -0.78 16 2 C 0.19 3.08 6.81 -82.35 -0.56 2.52 16 3 C -0.26 -3.79 9.24 -39.10 -0.36 -4.16 16 4 C 0.35 5.86 6.21 -154.83 -0.96 4.90 16 5 N -0.46 -6.41 5.30 -169.09 -0.90 -7.31 16 6 C 0.05 0.51 6.08 -1.90 -0.01 0.49 16 7 C -0.12 -1.12 7.06 -24.87 -0.18 -1.29 16 8 C -0.13 -1.39 6.93 -25.38 -0.18 -1.57 16 9 C 0.03 0.46 6.36 -2.75 -0.02 0.45 16 10 N -0.58 -11.28 7.56 -13.16 -0.10 -11.38 16 11 C 0.54 11.43 6.25 -322.87 -2.02 9.41 16 12 N -0.48 -10.73 4.71 -175.44 -0.83 -11.56 16 13 C 0.07 1.44 5.18 -3.83 -0.02 1.42 16 14 C -0.11 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -2.38 5.23 -26.60 -0.14 -2.52 16 16 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 17 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.51 -14.16 8.56 -34.44 -0.29 -14.46 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 21 N -0.89 -25.68 11.34 55.43 0.63 -25.05 16 22 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.08 2.00 4.36 -3.84 -0.02 1.98 16 27 N -0.51 -10.38 10.40 -10.24 -0.11 -10.49 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.74 7.99 -51.93 -0.42 0.32 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.44 6.53 -51.93 -0.34 1.10 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.04 0.82 7.91 -51.93 -0.41 0.41 16 41 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.02 0.52 8.10 -51.93 -0.42 0.10 16 48 H 0.10 2.97 6.07 -51.93 -0.32 2.65 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -31.09 375.08 -13.72 -44.81 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -8.20 Total: 2.03 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -4.85 Total: -3.02 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -1.30 Total: -65.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.09 -13.72 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166739997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.496 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds