Wall clock time and date at job start Tue Mar 31 2020 11:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38133 * 120.35011 * 2 1 4 4 C 1.39643 * 118.49007 * 179.97438 * 3 2 1 5 5 N 1.38533 * 120.48591 * 180.02562 * 4 3 2 6 6 C 1.48522 * 111.00048 * 62.58000 * 5 4 3 7 7 C 1.54936 * 103.22788 * 159.72036 * 6 5 4 8 8 C 1.54598 * 102.92318 * 322.58639 * 7 6 5 9 9 C 1.47908 * 110.99825 * 179.97438 * 5 4 3 10 10 N 1.32930 * 119.02637 * 359.97438 * 4 3 2 11 11 C 1.32438 * 120.61443 * 0.02562 * 10 4 3 12 12 N 1.38403 * 119.17668 * 179.97438 * 11 10 4 13 13 C 1.46854 * 110.99619 * 303.95205 * 12 11 10 14 14 C 1.53037 * 109.51886 * 185.84376 * 13 12 11 15 15 C 1.53126 * 109.27801 * 300.81620 * 14 13 12 16 16 C 1.53124 * 109.15878 * 57.65645 * 15 14 13 17 17 H 1.08999 * 109.50059 * 62.28737 * 16 15 14 18 18 C 1.50696 * 109.50007 * 182.40592 * 16 15 14 19 19 H 1.07997 * 120.00547 * 0.02562 * 18 16 15 20 20 C 1.37876 * 119.99728 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00108 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00080 * 180.02562 * 20 18 16 23 23 H 1.48491 * 109.47088 * 59.99637 * 22 20 18 24 24 H 1.48497 * 109.46973 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46726 * 299.99288 * 22 20 18 26 26 C 1.46844 * 111.00167 * 68.15905 * 12 11 10 27 27 N 1.32481 * 120.35799 * 180.25491 * 2 1 3 28 28 H 1.09007 * 109.47162 * 90.00325 * 1 2 3 29 29 H 1.09002 * 109.46794 * 209.99114 * 1 2 3 30 30 H 1.08990 * 109.47727 * 330.00074 * 1 2 3 31 31 H 1.08002 * 120.75629 * 359.97438 * 3 2 1 32 32 H 1.09003 * 110.67127 * 278.15517 * 6 5 4 33 33 H 1.09000 * 110.67337 * 41.28768 * 6 5 4 34 34 H 1.09002 * 110.72825 * 204.22561 * 7 6 5 35 35 H 1.09005 * 110.87713 * 81.01408 * 7 6 5 36 36 H 1.09002 * 110.30759 * 263.04085 * 8 7 6 37 37 H 1.08994 * 110.39462 * 140.91076 * 8 7 6 38 38 H 1.08993 * 109.91502 * 333.50756 * 9 5 4 39 39 H 1.08994 * 109.91503 * 94.79754 * 9 5 4 40 40 H 1.08994 * 109.46310 * 65.82602 * 13 12 11 41 41 H 1.09004 * 109.45830 * 305.85289 * 13 12 11 42 42 H 1.09000 * 109.50480 * 180.88135 * 14 13 12 43 43 H 1.09002 * 109.53848 * 60.77851 * 14 13 12 44 44 H 1.08998 * 109.52297 * 177.56592 * 15 14 13 45 45 H 1.08999 * 109.51925 * 297.75795 * 15 14 13 46 46 H 0.96997 * 120.00064 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.46133 * 294.17885 * 26 12 11 48 48 H 1.09002 * 109.46165 * 54.15524 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1920 0.0000 4 6 3.6006 1.1467 0.0005 5 7 4.3418 2.3171 0.0011 6 6 4.0867 3.1081 1.2320 7 6 5.3218 4.0396 1.3171 8 6 6.4740 3.1316 0.8292 9 6 5.7920 2.0260 0.0022 10 7 4.2076 -0.0360 0.0016 11 6 3.5015 -1.1564 0.0016 12 7 4.1641 -2.3715 0.0021 13 6 5.0887 -2.4671 -1.1348 14 6 5.6928 -3.8723 -1.1858 15 6 6.4347 -4.1515 0.1244 16 6 5.4607 -3.9978 1.2959 17 1 4.6617 -4.7334 1.2037 18 6 6.1966 -4.2130 2.5933 19 1 7.2531 -4.4365 2.5843 20 6 5.5209 -4.1245 3.7919 21 7 4.2344 -3.8518 3.8030 22 14 6.4331 -4.3905 5.4002 23 1 7.5190 -3.3855 5.5254 24 1 5.4879 -4.2415 6.5358 25 1 7.0174 -5.7556 5.4179 26 6 4.8633 -2.5891 1.2749 27 7 2.1765 -1.1431 -0.0051 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.6831 2.1376 -0.0004 32 1 3.1712 3.6913 1.1317 33 1 4.0354 2.4566 2.1044 34 1 5.4926 4.3609 2.3447 35 1 5.2047 4.9011 0.6596 36 1 7.0000 2.6979 1.6797 37 1 7.1659 3.6979 0.2059 38 1 5.9752 1.0538 0.4595 39 1 6.1737 2.0370 -1.0186 40 1 5.8858 -1.7331 -1.0174 41 1 4.5476 -2.2707 -2.0604 42 1 6.3909 -3.9383 -2.0203 43 1 4.8978 -4.6063 -1.3174 44 1 6.8299 -5.1672 0.1099 45 1 7.2546 -3.4421 0.2369 46 1 3.7589 -3.7899 4.6462 47 1 5.6615 -1.8544 1.3810 48 1 4.1586 -2.4813 2.0995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166739997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:27 Heat of formation + Delta-G solvation = 50.816351 kcal Electronic energy + Delta-G solvation = -27613.355006 eV Core-core repulsion = 24088.650262 eV Total energy + Delta-G solvation = -3524.704745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.48019 -40.30811 -39.33279 -35.91377 -35.24201 -34.44425 -32.51514 -31.47847 -31.16858 -30.22881 -28.83096 -27.04063 -25.95050 -24.39217 -23.52142 -22.89754 -22.01821 -21.77523 -20.41647 -18.90068 -18.63914 -18.15053 -17.16632 -16.92995 -16.50916 -16.43563 -16.28157 -15.49699 -15.37217 -15.03305 -14.64782 -14.58656 -14.40370 -14.32339 -14.16019 -13.77268 -13.63144 -13.39223 -13.28309 -12.99844 -12.88506 -12.68714 -12.39345 -12.31693 -12.26292 -12.21969 -11.97628 -11.82441 -11.62692 -11.50716 -11.49401 -10.96232 -10.91193 -10.62209 -10.52562 -10.40945 -9.68099 -9.42498 -8.13289 -6.29445 -0.15018 0.10040 1.37935 1.39875 1.47667 2.20315 2.38933 2.46232 2.68400 3.14279 3.16306 3.50801 3.67188 3.78087 3.85722 4.01785 4.06381 4.09699 4.21111 4.21374 4.25968 4.30709 4.44062 4.51439 4.62986 4.70037 4.74483 4.78362 4.80476 4.81280 4.82288 4.86757 4.88413 4.98886 5.02092 5.06358 5.13864 5.18195 5.20435 5.27201 5.34359 5.42795 5.55195 5.74477 5.82812 5.88054 6.00260 6.05527 6.35523 6.42754 6.83232 7.22359 7.39536 8.90761 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.010454 B = 0.004657 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.643194 B = 6011.078083 C = 6638.818685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.179 3.821 3 C -0.241 4.241 4 C 0.337 3.663 5 N -0.456 5.456 6 C 0.040 3.960 7 C -0.112 4.112 8 C -0.129 4.129 9 C 0.032 3.968 10 N -0.596 5.596 11 C 0.507 3.493 12 N -0.492 5.492 13 C 0.078 3.922 14 C -0.105 4.105 15 C -0.105 4.105 16 C 0.052 3.948 17 H 0.001 0.999 18 C -0.535 4.535 19 H 0.060 0.940 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.109 3.891 27 N -0.547 5.547 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.183 0.817 32 H 0.118 0.882 33 H 0.034 0.966 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.260 0.740 47 H 0.000 1.000 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.616 17.375 -8.194 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.034 3.966 3 C -0.265 4.265 4 C 0.096 3.904 5 N -0.174 5.174 6 C -0.085 4.085 7 C -0.150 4.150 8 C -0.167 4.167 9 C -0.095 4.095 10 N -0.321 5.321 11 C 0.151 3.849 12 N -0.217 5.217 13 C -0.049 4.049 14 C -0.143 4.143 15 C -0.142 4.142 16 C 0.033 3.967 17 H 0.019 0.981 18 C -0.573 4.573 19 H 0.078 0.922 20 C -0.187 4.187 21 N -0.555 5.555 22 Si 0.781 3.219 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.017 4.017 27 N -0.266 5.266 28 H 0.121 0.879 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.200 0.800 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.018 0.982 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.781 16.492 -8.590 18.802 hybrid contribution 0.749 0.264 1.668 1.848 sum -2.031 16.756 -6.922 18.243 Atomic orbital electron populations 1.20873 0.84523 1.04974 1.04953 1.22315 0.99451 0.86741 0.88084 1.22411 0.92856 1.01710 1.09547 1.20583 0.91961 0.88618 0.89283 1.61935 1.06855 1.12218 1.36414 1.23505 1.02422 0.95189 0.87392 1.22531 0.91524 0.97569 1.03338 1.22448 0.98636 0.96031 0.99602 1.22872 0.85428 0.99358 1.01842 1.68505 1.43039 0.99562 1.21036 1.21110 0.87208 0.87790 0.88800 1.59412 1.31646 1.24427 1.06234 1.21987 0.93336 0.98445 0.91131 1.21588 0.99677 0.94843 0.98152 1.21574 0.97723 1.00598 0.94342 1.18648 0.93593 0.91095 0.93364 0.98065 1.21504 0.95807 1.48236 0.91757 0.92176 1.25855 0.95534 0.94646 1.02696 1.70061 1.09221 1.49278 1.26975 0.85636 0.78329 0.79168 0.78730 1.19630 1.21055 1.19041 1.21933 0.94603 0.98437 0.86753 1.68018 1.08699 1.32012 1.17873 0.87852 0.90950 0.87006 0.80006 0.86351 0.94752 0.88804 0.88338 0.91759 0.88651 0.93465 0.90112 0.94598 0.91307 0.88640 0.91904 0.92091 0.93496 0.93105 0.98184 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.21 71.23 0.73 -1.24 16 2 C 0.18 5.60 6.81 42.44 0.29 5.89 16 3 C -0.24 -6.68 9.24 22.58 0.21 -6.47 16 4 C 0.34 11.10 6.21 133.19 0.83 11.93 16 5 N -0.46 -12.13 5.30 -688.87 -3.65 -15.78 16 6 C 0.04 0.81 6.08 86.65 0.53 1.34 16 7 C -0.11 -1.71 7.06 31.80 0.22 -1.49 16 8 C -0.13 -2.52 6.93 31.47 0.22 -2.30 16 9 C 0.03 0.88 6.36 86.44 0.55 1.43 16 10 N -0.60 -24.21 7.56 -195.56 -1.48 -25.69 16 11 C 0.51 22.65 6.25 261.51 1.63 24.28 16 12 N -0.49 -23.28 4.71 -708.97 -3.34 -26.62 16 13 C 0.08 3.11 5.18 86.32 0.45 3.56 16 14 C -0.10 -3.84 6.09 30.65 0.19 -3.65 16 15 C -0.10 -4.52 5.23 30.68 0.16 -4.36 16 16 C 0.05 2.80 2.26 -11.49 -0.03 2.77 16 17 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 18 C -0.53 -30.51 8.56 25.60 0.22 -30.30 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.67 5.31 84.65 0.45 1.12 16 21 N -0.92 -55.71 11.34 21.45 0.24 -55.47 16 22 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.11 5.86 4.36 86.33 0.38 6.23 16 27 N -0.55 -22.92 10.40 -186.30 -1.94 -24.86 16 28 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.11 1.50 8.09 -2.39 -0.02 1.49 16 31 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 32 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 0.86 7.99 -2.39 -0.02 0.84 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.67 6.53 -2.39 -0.02 1.66 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.04 1.45 7.91 -2.39 -0.02 1.44 16 41 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 42 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 47 H 0.00 -0.01 8.10 -2.39 -0.02 -0.03 16 48 H 0.06 3.80 6.07 -2.39 -0.01 3.79 16 Total: -1.00 -73.44 375.08 -0.20 -73.64 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.93 Total: 19.33 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.02 Total: 8.73 kcal Atomic # 7 Polarization: -138.25 SS G_CDS: -10.17 Total: -148.41 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -73.44 -0.20 -73.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166739997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.457 kcal (2) G-P(sol) polarization free energy of solvation -73.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds