Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38129 * 120.35677 * 2 1 4 4 C 1.39633 * 118.49039 * 180.02562 * 3 2 1 5 5 N 1.38534 * 120.48630 * 179.97438 * 4 3 2 6 6 C 1.48534 * 110.99971 * 62.60413 * 5 4 3 7 7 C 1.54936 * 103.22942 * 159.72326 * 6 5 4 8 8 C 1.54596 * 102.91955 * 322.58085 * 7 6 5 9 9 C 1.47907 * 111.00215 * 179.97438 * 5 4 3 10 10 N 1.32938 * 119.02910 * 359.74827 * 4 3 2 11 11 C 1.32433 * 120.60881 * 0.50626 * 10 4 3 12 12 N 1.38395 * 119.17294 * 179.75985 * 11 10 4 13 13 C 1.46849 * 111.00347 * 303.67998 * 12 11 10 14 14 C 1.53037 * 109.52517 * 174.15657 * 13 12 11 15 15 C 1.53127 * 109.27534 * 59.18450 * 14 13 12 16 16 C 1.53115 * 109.15840 * 302.34529 * 15 14 13 17 17 H 1.09001 * 109.50153 * 297.66955 * 16 15 14 18 18 C 1.50702 * 109.50104 * 177.59347 * 16 15 14 19 19 H 1.08002 * 120.00299 * 0.08173 * 18 16 15 20 20 C 1.37884 * 119.99942 * 179.79731 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.46855 * 110.99517 * 179.43203 * 12 11 10 27 27 N 1.32485 * 120.35337 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47359 * 269.97837 * 1 2 3 29 29 H 1.09004 * 109.47274 * 29.97652 * 1 2 3 30 30 H 1.08998 * 109.47596 * 149.97427 * 1 2 3 31 31 H 1.08005 * 120.75450 * 0.04076 * 3 2 1 32 32 H 1.08999 * 110.66578 * 278.15756 * 6 5 4 33 33 H 1.09002 * 110.66818 * 41.28173 * 6 5 4 34 34 H 1.09000 * 110.72464 * 204.22791 * 7 6 5 35 35 H 1.08995 * 110.87917 * 81.01247 * 7 6 5 36 36 H 1.08994 * 110.31397 * 263.04393 * 8 7 6 37 37 H 1.09000 * 110.39425 * 140.91487 * 8 7 6 38 38 H 1.09000 * 109.91710 * 333.51467 * 9 5 4 39 39 H 1.09002 * 109.91246 * 94.80442 * 9 5 4 40 40 H 1.09005 * 109.46042 * 54.14481 * 13 12 11 41 41 H 1.08996 * 109.45414 * 294.17627 * 13 12 11 42 42 H 1.08991 * 109.50827 * 299.24591 * 14 13 12 43 43 H 1.09001 * 109.50210 * 179.12257 * 14 13 12 44 44 H 1.08991 * 109.52203 * 182.43748 * 15 14 13 45 45 H 1.08996 * 109.51923 * 62.24797 * 15 14 13 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.42796 * 65.80641 * 26 12 11 48 48 H 1.08993 * 109.49426 * 305.83464 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1919 0.0000 4 6 3.6007 1.1464 -0.0005 5 7 4.3420 2.3167 -0.0011 6 6 4.0883 3.1081 1.2300 7 6 5.3236 4.0396 1.3135 8 6 6.4751 3.1313 0.8246 9 6 5.7922 2.0256 -0.0010 10 7 4.2076 -0.0363 0.0041 11 6 3.5013 -1.1566 -0.0010 12 7 4.1638 -2.3717 -0.0010 13 6 5.0876 -2.4675 -1.1385 14 6 5.9055 -3.7561 -1.0261 15 6 4.9564 -4.9577 -1.0128 16 6 3.9740 -4.8092 0.1522 17 1 4.5231 -4.8103 1.0937 18 6 2.9986 -5.9578 0.1372 19 1 3.0721 -6.7189 -0.6255 20 6 2.0158 -6.0403 1.1009 21 7 1.9263 -5.1136 2.0297 22 14 0.8116 -7.4682 1.0868 23 1 1.1240 -8.3681 -0.0524 24 1 0.9254 -8.2243 2.3600 25 1 -0.5717 -6.9478 0.9422 26 6 3.2119 -3.4900 0.0066 27 7 2.1765 -1.1432 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6833 2.1376 0.0007 32 1 3.1728 3.6913 1.1306 33 1 4.0379 2.4567 2.1025 34 1 5.4956 4.3610 2.3408 35 1 5.2058 4.9009 0.6560 36 1 7.0020 2.6977 1.6744 37 1 7.1665 3.6974 0.2003 38 1 5.9757 1.0534 0.4565 39 1 6.1730 2.0363 -1.0223 40 1 5.7596 -1.6093 -1.1339 41 1 4.5187 -2.4783 -2.0682 42 1 6.4850 -3.7399 -0.1032 43 1 6.5800 -3.8345 -1.8788 44 1 5.5319 -5.8750 -0.8893 45 1 4.4047 -4.9964 -1.9520 46 1 1.2346 -5.1714 2.7074 47 1 2.6516 -3.4955 -0.9283 48 1 2.5222 -3.3749 0.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166739998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = 69.131263 kcal Electronic energy + Delta-G solvation = -27384.614919 eV Core-core repulsion = 23860.704369 eV Total energy + Delta-G solvation = -3523.910550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08881 -39.12258 -37.79103 -34.28810 -33.92979 -32.66145 -31.21920 -30.02746 -29.32570 -29.25823 -27.73511 -24.99873 -24.40348 -23.14782 -21.99509 -21.36360 -20.90530 -20.41920 -18.75458 -17.36241 -17.21362 -16.36476 -15.92126 -15.49718 -15.12143 -14.96253 -14.44583 -14.09501 -13.90136 -13.70355 -13.36906 -13.25915 -13.18343 -12.82387 -12.63489 -12.41424 -12.33441 -12.14276 -11.97088 -11.81760 -11.56183 -11.36892 -10.97977 -10.79231 -10.77183 -10.54936 -10.49039 -10.25951 -10.18106 -10.11826 -9.81303 -9.45182 -9.07969 -8.87553 -8.75944 -8.50606 -8.31743 -7.63909 -5.97071 -4.04133 1.39176 1.47502 3.31353 3.39621 3.43284 3.47036 3.80635 4.16090 4.35399 4.45267 4.46001 4.63630 4.75547 5.10407 5.15039 5.18076 5.26462 5.35253 5.42695 5.51175 5.52501 5.59076 5.59714 5.60801 5.67746 5.72324 5.77221 5.81122 5.86760 5.90540 6.06949 6.08249 6.13050 6.35128 6.38959 6.40226 6.53590 6.66636 6.76612 6.86774 6.99523 7.10149 7.17978 7.40898 7.45409 7.75976 7.95547 8.05999 8.15776 8.44280 8.75198 9.00251 9.61015 11.08582 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.003830 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.630941 B = 7308.957664 C = 8366.834850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.210 3.790 3 C -0.284 4.284 4 C 0.364 3.636 5 N -0.460 5.460 6 C 0.046 3.954 7 C -0.123 4.123 8 C -0.132 4.132 9 C 0.033 3.967 10 N -0.576 5.576 11 C 0.531 3.469 12 N -0.460 5.460 13 C 0.076 3.924 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.050 3.950 17 H 0.034 0.966 18 C -0.515 4.515 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.078 3.922 27 N -0.551 5.551 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.260 0.740 47 H 0.026 0.974 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 17.765 -3.004 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.063 3.937 3 C -0.310 4.310 4 C 0.122 3.878 5 N -0.179 5.179 6 C -0.080 4.080 7 C -0.161 4.161 8 C -0.171 4.171 9 C -0.094 4.094 10 N -0.301 5.301 11 C 0.175 3.825 12 N -0.178 5.178 13 C -0.051 4.051 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.031 3.969 17 H 0.052 0.948 18 C -0.554 4.554 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.047 4.047 27 N -0.273 5.273 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.155 0.845 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.474 17.126 -2.890 17.935 hybrid contribution -1.332 -0.269 0.093 1.362 sum 3.142 16.857 -2.796 17.374 Atomic orbital electron populations 1.20734 0.88314 1.03555 1.03462 1.21395 0.97143 0.87509 0.87681 1.21798 0.93556 1.00160 1.15525 1.19887 0.90444 0.88349 0.89099 1.61827 1.07033 1.13553 1.35481 1.23287 0.99851 0.95353 0.89471 1.22504 0.93796 0.98007 1.01776 1.22444 0.97942 0.96750 0.99927 1.22901 0.85042 0.99819 1.01600 1.67838 1.40876 0.97600 1.23826 1.21088 0.84882 0.89655 0.86895 1.58568 1.19766 0.99938 1.39536 1.22032 0.94344 0.99395 0.89280 1.21657 0.97860 0.94549 1.01341 1.21737 0.97351 0.95700 1.00465 1.18786 0.92924 0.91696 0.93498 0.94771 1.21147 1.13922 1.07889 1.12449 0.92384 1.25005 0.97532 0.96016 0.95264 1.69888 1.33658 1.33323 1.15237 0.86558 0.81121 0.82594 0.77858 1.19809 1.21065 1.21015 1.22596 0.93029 0.86404 1.02673 1.68471 1.08648 1.29777 1.20418 0.89869 0.90655 0.89889 0.84524 0.89170 0.92561 0.90524 0.90438 0.91142 0.90823 0.89498 0.90148 0.90522 0.94796 0.91471 0.92373 0.92879 0.93463 0.92985 0.95587 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.34 10.21 36.01 0.37 -0.97 16 2 C 0.21 3.57 6.81 -82.35 -0.56 3.01 16 3 C -0.28 -4.29 9.24 -39.10 -0.36 -4.66 16 4 C 0.36 5.93 6.21 -154.83 -0.96 4.97 16 5 N -0.46 -6.10 5.30 -169.09 -0.90 -7.00 16 6 C 0.05 0.48 6.08 -1.90 -0.01 0.47 16 7 C -0.12 -1.00 7.06 -24.87 -0.18 -1.17 16 8 C -0.13 -1.21 6.93 -25.39 -0.18 -1.38 16 9 C 0.03 0.41 6.36 -2.77 -0.02 0.39 16 10 N -0.58 -10.90 7.53 -13.17 -0.10 -11.00 16 11 C 0.53 11.33 7.16 -322.90 -2.31 9.01 16 12 N -0.46 -10.23 4.71 -175.44 -0.83 -11.05 16 13 C 0.08 1.44 5.33 -3.83 -0.02 1.42 16 14 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -2.42 5.23 -26.61 -0.14 -2.56 16 16 C 0.05 1.27 2.26 -91.69 -0.21 1.06 16 17 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.52 -14.19 8.56 -34.44 -0.29 -14.48 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.78 5.31 -17.82 -0.09 1.68 16 21 N -0.88 -25.50 11.34 55.43 0.63 -24.87 16 22 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 C 0.08 1.95 3.68 -3.83 -0.01 1.93 16 27 N -0.55 -11.65 8.60 -10.24 -0.09 -11.73 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.66 7.99 -51.93 -0.42 0.24 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.29 6.52 -51.93 -0.34 0.95 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.36 7.56 -51.93 -0.39 0.97 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 48 H 0.12 3.43 5.66 -51.93 -0.29 3.13 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -30.90 372.91 -13.99 -44.89 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.16 Total: 2.34 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -5.14 Total: -3.53 kcal Atomic # 7 Polarization: -64.37 SS G_CDS: -1.28 Total: -65.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.90 -13.99 -44.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166739998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.025 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds