Wall clock time and date at job start Tue Mar 31 2020 11:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38129 * 120.35677 * 2 1 4 4 C 1.39633 * 118.49039 * 180.02562 * 3 2 1 5 5 N 1.38534 * 120.48630 * 179.97438 * 4 3 2 6 6 C 1.48534 * 110.99971 * 62.60413 * 5 4 3 7 7 C 1.54936 * 103.22942 * 159.72326 * 6 5 4 8 8 C 1.54596 * 102.91955 * 322.58085 * 7 6 5 9 9 C 1.47907 * 111.00215 * 179.97438 * 5 4 3 10 10 N 1.32938 * 119.02910 * 359.74827 * 4 3 2 11 11 C 1.32433 * 120.60881 * 0.50626 * 10 4 3 12 12 N 1.38395 * 119.17294 * 179.75985 * 11 10 4 13 13 C 1.46849 * 111.00347 * 303.67998 * 12 11 10 14 14 C 1.53037 * 109.52517 * 174.15657 * 13 12 11 15 15 C 1.53127 * 109.27534 * 59.18450 * 14 13 12 16 16 C 1.53115 * 109.15840 * 302.34529 * 15 14 13 17 17 H 1.09001 * 109.50153 * 297.66955 * 16 15 14 18 18 C 1.50702 * 109.50104 * 177.59347 * 16 15 14 19 19 H 1.08002 * 120.00299 * 0.08173 * 18 16 15 20 20 C 1.37884 * 119.99942 * 179.79731 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.46855 * 110.99517 * 179.43203 * 12 11 10 27 27 N 1.32485 * 120.35337 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47359 * 269.97837 * 1 2 3 29 29 H 1.09004 * 109.47274 * 29.97652 * 1 2 3 30 30 H 1.08998 * 109.47596 * 149.97427 * 1 2 3 31 31 H 1.08005 * 120.75450 * 0.04076 * 3 2 1 32 32 H 1.08999 * 110.66578 * 278.15756 * 6 5 4 33 33 H 1.09002 * 110.66818 * 41.28173 * 6 5 4 34 34 H 1.09000 * 110.72464 * 204.22791 * 7 6 5 35 35 H 1.08995 * 110.87917 * 81.01247 * 7 6 5 36 36 H 1.08994 * 110.31397 * 263.04393 * 8 7 6 37 37 H 1.09000 * 110.39425 * 140.91487 * 8 7 6 38 38 H 1.09000 * 109.91710 * 333.51467 * 9 5 4 39 39 H 1.09002 * 109.91246 * 94.80442 * 9 5 4 40 40 H 1.09005 * 109.46042 * 54.14481 * 13 12 11 41 41 H 1.08996 * 109.45414 * 294.17627 * 13 12 11 42 42 H 1.08991 * 109.50827 * 299.24591 * 14 13 12 43 43 H 1.09001 * 109.50210 * 179.12257 * 14 13 12 44 44 H 1.08991 * 109.52203 * 182.43748 * 15 14 13 45 45 H 1.08996 * 109.51923 * 62.24797 * 15 14 13 46 46 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.42796 * 65.80641 * 26 12 11 48 48 H 1.08993 * 109.49426 * 305.83464 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2051 1.1919 0.0000 4 6 3.6007 1.1464 -0.0005 5 7 4.3420 2.3167 -0.0011 6 6 4.0883 3.1081 1.2300 7 6 5.3236 4.0396 1.3135 8 6 6.4751 3.1313 0.8246 9 6 5.7922 2.0256 -0.0010 10 7 4.2076 -0.0363 0.0041 11 6 3.5013 -1.1566 -0.0010 12 7 4.1638 -2.3717 -0.0010 13 6 5.0876 -2.4675 -1.1385 14 6 5.9055 -3.7561 -1.0261 15 6 4.9564 -4.9577 -1.0128 16 6 3.9740 -4.8092 0.1522 17 1 4.5231 -4.8103 1.0937 18 6 2.9986 -5.9578 0.1372 19 1 3.0721 -6.7189 -0.6255 20 6 2.0158 -6.0403 1.1009 21 7 1.9263 -5.1136 2.0297 22 14 0.8116 -7.4682 1.0868 23 1 1.1240 -8.3681 -0.0524 24 1 0.9254 -8.2243 2.3600 25 1 -0.5717 -6.9478 0.9422 26 6 3.2119 -3.4900 0.0066 27 7 2.1765 -1.1432 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6833 2.1376 0.0007 32 1 3.1728 3.6913 1.1306 33 1 4.0379 2.4567 2.1025 34 1 5.4956 4.3610 2.3408 35 1 5.2058 4.9009 0.6560 36 1 7.0020 2.6977 1.6744 37 1 7.1665 3.6974 0.2003 38 1 5.9757 1.0534 0.4565 39 1 6.1730 2.0363 -1.0223 40 1 5.7596 -1.6093 -1.1339 41 1 4.5187 -2.4783 -2.0682 42 1 6.4850 -3.7399 -0.1032 43 1 6.5800 -3.8345 -1.8788 44 1 5.5319 -5.8750 -0.8893 45 1 4.4047 -4.9964 -1.9520 46 1 1.2346 -5.1714 2.7074 47 1 2.6516 -3.4955 -0.9283 48 1 2.5222 -3.3749 0.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166739998.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:30 Heat of formation + Delta-G solvation = 52.418642 kcal Electronic energy + Delta-G solvation = -27385.339633 eV Core-core repulsion = 23860.704369 eV Total energy + Delta-G solvation = -3524.635264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43267 -40.37170 -39.23825 -35.88058 -35.24889 -34.44988 -32.55405 -31.66870 -30.82448 -30.16027 -28.85371 -27.00769 -25.98528 -24.31952 -23.55756 -22.80319 -21.93388 -21.55047 -20.51077 -18.81702 -18.62585 -18.07091 -17.12123 -16.84935 -16.49037 -16.35684 -16.23062 -15.49516 -15.32301 -15.07154 -14.73821 -14.57332 -14.34816 -14.27400 -14.15193 -13.79361 -13.54616 -13.39150 -13.33618 -12.97541 -12.90210 -12.61479 -12.31229 -12.29965 -12.19719 -12.17325 -11.87914 -11.80364 -11.64387 -11.52218 -11.40173 -11.01843 -10.88772 -10.86107 -10.48137 -10.16079 -9.76806 -9.18213 -8.09464 -6.25038 0.01785 0.16664 1.40343 1.41727 1.53701 2.18337 2.42823 2.47213 2.85905 3.14730 3.21972 3.57270 3.65979 3.86056 3.94108 4.03363 4.06091 4.12402 4.25402 4.28256 4.29761 4.35506 4.47134 4.50445 4.68568 4.69940 4.73706 4.74687 4.82414 4.84571 4.88025 4.91109 4.94884 4.99644 5.05820 5.12347 5.15968 5.21624 5.24251 5.28177 5.35076 5.46368 5.59093 5.74677 5.85060 5.95153 6.03192 6.12507 6.36582 6.46892 6.86636 7.29650 7.44048 8.95066 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016806 B = 0.003830 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.630941 B = 7308.957664 C = 8366.834850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.190 3.810 3 C -0.267 4.267 4 C 0.354 3.646 5 N -0.457 5.457 6 C 0.041 3.959 7 C -0.113 4.113 8 C -0.127 4.127 9 C 0.030 3.970 10 N -0.584 5.584 11 C 0.507 3.493 12 N -0.476 5.476 13 C 0.079 3.921 14 C -0.106 4.106 15 C -0.108 4.108 16 C 0.047 3.953 17 H -0.002 1.002 18 C -0.536 4.536 19 H 0.058 0.942 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.957 3.043 23 H -0.265 1.265 24 H -0.280 1.280 25 H -0.281 1.281 26 C 0.107 3.893 27 N -0.594 5.594 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.176 0.824 32 H 0.112 0.888 33 H 0.039 0.961 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.260 0.740 47 H 0.004 0.996 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.018 20.124 -3.716 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.045 3.955 3 C -0.293 4.293 4 C 0.113 3.887 5 N -0.175 5.175 6 C -0.084 4.084 7 C -0.151 4.151 8 C -0.165 4.165 9 C -0.097 4.097 10 N -0.310 5.310 11 C 0.150 3.850 12 N -0.195 5.195 13 C -0.047 4.047 14 C -0.144 4.144 15 C -0.146 4.146 16 C 0.028 3.972 17 H 0.016 0.984 18 C -0.574 4.574 19 H 0.076 0.924 20 C -0.185 4.185 21 N -0.551 5.551 22 Si 0.782 3.218 23 H -0.189 1.189 24 H -0.205 1.205 25 H -0.207 1.207 26 C -0.019 4.019 27 N -0.318 5.318 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.194 0.806 32 H 0.130 0.870 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.082 0.918 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.590 19.534 -3.607 20.388 hybrid contribution -1.365 -0.840 0.317 1.634 sum 3.224 18.694 -3.290 19.253 Atomic orbital electron populations 1.20839 0.85644 1.04673 1.04346 1.22097 0.98941 0.87145 0.87284 1.22167 0.93160 1.01014 1.12978 1.20393 0.91534 0.88462 0.88353 1.61942 1.07201 1.11881 1.36515 1.23490 1.02226 0.95205 0.87494 1.22530 0.91706 0.97540 1.03323 1.22440 0.98412 0.95957 0.99735 1.22923 0.85027 0.99776 1.01971 1.67853 1.40974 0.97871 1.24301 1.21082 0.85369 0.89924 0.88600 1.58548 1.19702 0.99818 1.41387 1.22103 0.93961 1.00490 0.88153 1.21621 0.97392 0.92406 1.02969 1.21620 0.97037 0.97620 0.98333 1.18735 0.93317 0.91578 0.93607 0.98393 1.21510 1.14671 1.08657 1.12572 0.92352 1.25813 0.99267 0.98510 0.94878 1.70057 1.34263 1.34988 1.15813 0.85526 0.78662 0.79469 0.78127 1.18864 1.20544 1.20702 1.21951 0.92715 0.87551 0.99700 1.68428 1.08997 1.32319 1.22013 0.88940 0.86717 0.91516 0.80632 0.86985 0.94200 0.88643 0.88837 0.91102 0.88928 0.92445 0.90216 0.89162 0.95306 0.91794 0.88297 0.92098 0.93434 0.93113 0.97808 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 10.21 71.24 0.73 -1.71 16 2 C 0.19 6.45 6.81 42.43 0.29 6.74 16 3 C -0.27 -7.67 9.24 22.58 0.21 -7.46 16 4 C 0.35 11.28 6.21 133.18 0.83 12.11 16 5 N -0.46 -11.30 5.30 -688.87 -3.65 -14.95 16 6 C 0.04 0.74 6.08 86.65 0.53 1.27 16 7 C -0.11 -1.45 7.06 31.80 0.22 -1.22 16 8 C -0.13 -2.01 6.93 31.46 0.22 -1.79 16 9 C 0.03 0.71 6.36 86.44 0.55 1.26 16 10 N -0.58 -22.57 7.53 -195.58 -1.47 -24.04 16 11 C 0.51 22.57 7.16 261.52 1.87 24.45 16 12 N -0.48 -22.21 4.71 -708.98 -3.34 -25.55 16 13 C 0.08 3.05 5.33 86.33 0.46 3.51 16 14 C -0.11 -3.79 6.09 30.65 0.19 -3.60 16 15 C -0.11 -4.63 5.23 30.68 0.16 -4.47 16 16 C 0.05 2.49 2.26 -11.49 -0.03 2.46 16 17 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 18 C -0.54 -30.54 8.56 25.60 0.22 -30.32 16 19 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 20 C 0.01 0.84 5.31 84.66 0.45 1.29 16 21 N -0.91 -55.05 11.34 21.45 0.24 -54.81 16 22 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 26 C 0.11 5.70 3.68 86.32 0.32 6.01 16 27 N -0.59 -26.24 8.60 -186.32 -1.60 -27.84 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.11 1.90 8.09 -2.38 -0.02 1.88 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.73 6.52 -2.39 -0.02 1.71 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 3.23 7.56 -2.38 -0.02 3.21 16 41 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 47 H 0.00 0.20 8.10 -2.39 -0.02 0.18 16 48 H 0.08 5.08 5.66 -2.39 -0.01 5.07 16 Total: -1.00 -72.12 372.91 0.34 -71.78 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.93 Total: 20.12 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 7.21 Total: 8.53 kcal Atomic # 7 Polarization: -137.37 SS G_CDS: -9.83 Total: -147.20 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.12 0.34 -71.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166739998.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.195 kcal (2) G-P(sol) polarization free energy of solvation -72.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds