Wall clock time and date at job start Tue Mar 31 2020 11:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38121 * 120.75502 * 2 1 4 4 N 1.32489 * 119.28891 * 179.97438 * 3 2 1 5 5 C 1.32502 * 120.93320 * 359.97438 * 4 3 2 6 6 N 1.38395 * 119.17738 * 180.02562 * 5 4 3 7 7 C 1.46845 * 110.99689 * 235.79036 * 6 5 4 8 8 C 1.53036 * 109.52142 * 185.84014 * 7 6 5 9 9 C 1.53119 * 109.27865 * 300.81921 * 8 7 6 10 10 C 1.53111 * 109.16079 * 57.65516 * 9 8 7 11 11 H 1.09000 * 109.50327 * 62.28823 * 10 9 8 12 12 C 1.50708 * 109.50347 * 182.40590 * 10 9 8 13 13 H 1.07991 * 119.99599 * 359.79915 * 12 10 9 14 14 C 1.37873 * 119.99799 * 179.80521 * 12 10 9 15 15 N 1.31510 * 120.00422 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99737 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47232 * 89.99782 * 16 14 12 18 18 H 1.48498 * 109.46897 * 209.99485 * 16 14 12 19 19 H 1.48498 * 109.47057 * 329.99721 * 16 14 12 20 20 C 1.46849 * 111.00310 * 359.97438 * 6 5 4 21 21 N 1.32441 * 121.64192 * 359.71788 * 5 4 3 22 22 C 1.32926 * 120.61104 * 0.57384 * 21 5 4 23 23 N 1.38534 * 120.48447 * 179.71746 * 22 21 5 24 24 C 1.46506 * 119.99733 * 359.71788 * 23 22 21 25 25 C 1.52999 * 109.46684 * 180.02562 * 24 23 22 26 26 C 1.53000 * 117.50038 * 243.61959 * 25 24 23 27 27 C 1.53000 * 60.00144 * 252.51576 * 26 25 24 28 28 H 1.09002 * 109.47379 * 270.02256 * 1 2 3 29 29 H 1.08999 * 109.47181 * 30.01834 * 1 2 3 30 30 H 1.09002 * 109.47437 * 150.02415 * 1 2 3 31 31 H 1.08002 * 120.35933 * 359.95329 * 3 2 1 32 32 H 1.09000 * 109.46220 * 305.85431 * 7 6 5 33 33 H 1.08996 * 109.46724 * 65.82281 * 7 6 5 34 34 H 1.09009 * 109.50332 * 180.87695 * 8 7 6 35 35 H 1.09003 * 109.54094 * 60.78248 * 8 7 6 36 36 H 1.09005 * 109.52293 * 297.74566 * 9 8 7 37 37 H 1.09004 * 109.52518 * 177.56288 * 9 8 7 38 38 H 0.97001 * 120.00413 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46382 * 294.18294 * 20 6 5 40 40 H 1.09000 * 109.45884 * 54.15220 * 20 6 5 41 41 H 0.96995 * 120.00158 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47212 * 300.00323 * 24 23 22 43 43 H 1.09001 * 109.46577 * 60.00398 * 24 23 22 44 44 H 1.09004 * 115.55402 * 29.33356 * 25 24 23 45 45 H 1.09001 * 117.49586 * 0.02562 * 26 25 24 46 46 H 1.08995 * 117.49974 * 145.02135 * 26 25 24 47 47 H 1.09000 * 117.49814 * 252.50944 * 27 26 25 48 48 H 1.08998 * 117.51550 * 107.48389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2133 1.1870 0.0000 4 7 3.5377 1.1531 0.0005 5 6 4.1895 -0.0006 0.0015 6 7 5.5735 0.0064 0.0026 7 6 6.1044 -0.7622 -1.1304 8 6 7.6277 -0.8552 -1.0163 9 6 8.2212 0.5563 -1.0101 10 6 7.6157 1.3510 0.1502 11 1 7.8807 0.8753 1.0944 12 6 8.1503 2.7599 0.1281 13 1 8.8542 3.0584 -0.6345 14 6 7.7408 3.6675 1.0817 15 7 6.8833 3.3041 2.0103 16 14 8.4040 5.4137 1.0548 17 1 7.5192 6.2665 0.2210 18 1 8.4455 5.9487 2.4395 19 1 9.7743 5.4140 0.4827 20 6 6.0929 1.3800 0.0017 21 7 3.5497 -1.1601 0.0076 22 6 2.2210 -1.2001 0.0015 23 7 1.5544 -2.4145 0.0020 24 6 2.3142 -3.6671 0.0031 25 6 1.3453 -4.8512 0.0028 26 6 1.3637 -5.7793 1.2190 27 6 1.9444 -6.2542 -0.1144 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6916 2.1326 -0.0008 32 1 5.6776 -1.7651 -1.1207 33 1 5.8398 -0.2641 -2.0631 34 1 8.0229 -1.4124 -1.8657 35 1 7.8935 -1.3658 -0.0907 36 1 7.9894 1.0531 -1.9522 37 1 9.3025 0.4963 -0.8854 38 1 6.5949 3.9428 2.6809 39 1 5.8282 1.8678 -0.9364 40 1 5.6577 1.9333 0.8340 41 1 0.5847 -2.4355 -0.0021 42 1 2.9424 -3.7118 -0.8866 43 1 2.9416 -3.7107 0.8934 44 1 0.3844 -4.6724 -0.4797 45 1 2.0657 -5.5461 2.0195 46 1 0.4147 -6.2111 1.5370 47 1 1.3776 -6.9984 -0.6738 48 1 3.0288 -6.3335 -0.1917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:05 Heat of formation + Delta-G solvation = 82.774010 kcal Electronic energy + Delta-G solvation = -26742.304247 eV Core-core repulsion = 23218.985291 eV Total energy + Delta-G solvation = -3523.318956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74130 -38.45312 -37.81450 -35.59304 -33.97638 -32.75147 -31.99091 -31.32912 -29.50254 -27.19478 -26.28898 -24.95020 -23.59595 -22.90046 -22.65904 -21.51305 -21.35888 -20.67845 -18.72360 -17.77904 -17.28755 -16.29848 -15.98727 -15.34729 -15.19426 -14.58967 -14.31818 -14.15875 -14.12069 -13.98800 -13.74919 -13.41129 -13.24416 -13.17754 -12.57213 -12.43363 -12.35729 -12.15368 -11.84927 -11.78408 -11.61586 -11.08953 -10.92346 -10.75697 -10.72766 -10.47858 -10.31594 -10.24822 -10.14660 -10.10606 -9.77123 -9.39485 -9.01255 -8.84133 -8.53315 -8.31070 -8.07148 -7.41471 -5.92235 -3.99547 1.52475 1.86562 3.03178 3.35816 3.42462 3.45160 3.50663 3.96833 4.29715 4.43123 4.49672 4.60457 4.65738 4.81819 4.93233 5.02904 5.21497 5.26103 5.33203 5.36917 5.45396 5.48138 5.60235 5.60601 5.64773 5.66091 5.68908 5.81108 5.89590 5.92977 5.95928 6.09081 6.15050 6.41017 6.44759 6.60491 6.70682 6.80936 6.89605 7.01033 7.06243 7.17079 7.30750 7.52162 7.76017 7.82242 8.04085 8.15399 8.22657 8.49903 8.92164 9.04682 9.65345 11.13222 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.003342 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.549445 B = 8375.536043 C = 9503.030373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.307 4.307 3 C 0.198 3.802 4 N -0.570 5.570 5 C 0.539 3.461 6 N -0.459 5.459 7 C 0.076 3.924 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.050 3.950 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.882 5.882 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.078 3.922 21 N -0.591 5.591 22 C 0.456 3.544 23 N -0.715 5.715 24 C 0.164 3.836 25 C -0.171 4.171 26 C -0.177 4.177 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.158 0.842 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.122 0.878 41 H 0.407 0.593 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.385 -14.913 -4.937 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.319 4.319 3 C 0.033 3.967 4 N -0.292 5.292 5 C 0.183 3.817 6 N -0.178 5.178 7 C -0.050 4.050 8 C -0.154 4.154 9 C -0.152 4.152 10 C 0.031 3.969 11 H 0.052 0.948 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.047 4.047 21 N -0.320 5.320 22 C 0.210 3.790 23 N -0.351 5.351 24 C 0.040 3.960 25 C -0.189 4.189 26 C -0.214 4.214 27 C -0.208 4.208 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.175 0.825 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.140 0.860 41 H 0.244 0.756 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.125 0.875 45 H 0.116 0.884 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.061 -15.210 -4.344 20.513 hybrid contribution -1.317 1.265 -0.421 1.874 sum -14.377 -13.945 -4.765 20.588 Atomic orbital electron populations 1.20305 0.90460 1.01864 1.01458 1.20609 0.97645 0.93674 1.19937 1.22639 0.89223 0.96945 0.87932 1.68611 1.09300 1.29049 1.22230 1.20967 0.91360 0.82881 0.86451 1.58540 0.99547 1.19981 1.39706 1.22010 0.96194 0.97380 0.89407 1.21658 0.93418 0.99072 1.01282 1.21738 0.99368 0.93664 1.00478 1.18783 0.89806 0.94793 0.93504 0.94781 1.21101 1.26081 0.95431 1.12866 0.92476 1.25001 0.94962 0.98574 0.95274 1.69871 1.31809 1.34775 1.15549 0.86619 0.79313 0.85052 0.77151 1.20710 1.21289 1.19988 1.22590 0.98067 0.81390 1.02673 1.67463 1.07192 1.30039 1.27260 1.18024 0.88030 0.85584 0.87384 1.44352 1.08065 1.02115 1.80580 1.20783 0.92462 0.80372 1.02428 1.22477 1.01130 0.91603 1.03694 1.23089 1.03036 1.03465 0.91841 1.22944 1.01334 0.96013 1.00496 0.92071 0.91609 0.92870 0.82507 0.90562 0.94902 0.92490 0.91496 0.93494 0.92952 0.92922 0.95625 0.86031 0.75554 0.91421 0.91388 0.87523 0.88395 0.88792 0.88589 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.64 36.00 0.35 -0.46 16 2 C -0.31 -4.43 5.93 -104.14 -0.62 -5.05 16 3 C 0.20 3.32 10.98 -17.31 -0.19 3.13 16 4 N -0.57 -12.11 8.67 -14.02 -0.12 -12.24 16 5 C 0.54 11.57 7.17 -322.88 -2.31 9.25 16 6 N -0.46 -10.32 4.72 -175.45 -0.83 -11.15 16 7 C 0.08 1.47 5.33 -3.84 -0.02 1.45 16 8 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 9 C -0.11 -2.44 5.22 -26.61 -0.14 -2.58 16 10 C 0.05 1.29 2.27 -91.69 -0.21 1.08 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.52 -14.34 8.56 -34.44 -0.29 -14.63 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 15 N -0.88 -25.76 11.33 55.43 0.63 -25.14 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.08 1.97 3.68 -3.83 -0.01 1.95 16 21 N -0.59 -11.14 8.92 -13.17 -0.12 -11.25 16 22 C 0.46 7.12 7.49 -154.83 -1.16 5.96 16 23 N -0.72 -8.32 5.61 -60.28 -0.34 -8.66 16 24 C 0.16 1.78 6.01 -4.04 -0.02 1.75 16 25 C -0.17 -1.35 5.85 -90.62 -0.53 -1.88 16 26 C -0.18 -1.31 10.18 -26.73 -0.27 -1.58 16 27 C -0.17 -1.21 10.25 -26.73 -0.27 -1.49 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.05 0.43 6.66 -51.93 -0.35 0.08 16 31 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.08 1.36 7.55 -51.93 -0.39 0.97 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.12 3.49 5.63 -51.93 -0.29 3.20 16 41 H 0.41 3.66 6.51 -40.82 -0.27 3.39 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.85 7.88 -51.93 -0.41 0.45 16 44 H 0.11 0.73 8.04 -51.93 -0.42 0.31 16 45 H 0.10 0.78 8.03 -51.93 -0.42 0.37 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -31.50 380.24 -14.03 -45.53 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.00 Total: 4.30 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -5.97 Total: -3.67 kcal Atomic # 7 Polarization: -67.66 SS G_CDS: -0.78 Total: -68.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.50 -14.03 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.305 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds