Wall clock time and date at job start Tue Mar 31 2020 11:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38121 * 120.75502 * 2 1 4 4 N 1.32489 * 119.28891 * 179.97438 * 3 2 1 5 5 C 1.32502 * 120.93320 * 359.97438 * 4 3 2 6 6 N 1.38395 * 119.17738 * 180.02562 * 5 4 3 7 7 C 1.46845 * 110.99689 * 235.79036 * 6 5 4 8 8 C 1.53036 * 109.52142 * 185.84014 * 7 6 5 9 9 C 1.53119 * 109.27865 * 300.81921 * 8 7 6 10 10 C 1.53111 * 109.16079 * 57.65516 * 9 8 7 11 11 H 1.09000 * 109.50327 * 62.28823 * 10 9 8 12 12 C 1.50708 * 109.50347 * 182.40590 * 10 9 8 13 13 H 1.07991 * 119.99599 * 359.79915 * 12 10 9 14 14 C 1.37873 * 119.99799 * 179.80521 * 12 10 9 15 15 N 1.31510 * 120.00422 * 359.97438 * 14 12 10 16 16 Si 1.86806 * 119.99737 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47232 * 89.99782 * 16 14 12 18 18 H 1.48498 * 109.46897 * 209.99485 * 16 14 12 19 19 H 1.48498 * 109.47057 * 329.99721 * 16 14 12 20 20 C 1.46849 * 111.00310 * 359.97438 * 6 5 4 21 21 N 1.32441 * 121.64192 * 359.71788 * 5 4 3 22 22 C 1.32926 * 120.61104 * 0.57384 * 21 5 4 23 23 N 1.38534 * 120.48447 * 179.71746 * 22 21 5 24 24 C 1.46506 * 119.99733 * 359.71788 * 23 22 21 25 25 C 1.52999 * 109.46684 * 180.02562 * 24 23 22 26 26 C 1.53000 * 117.50038 * 243.61959 * 25 24 23 27 27 C 1.53000 * 60.00144 * 252.51576 * 26 25 24 28 28 H 1.09002 * 109.47379 * 270.02256 * 1 2 3 29 29 H 1.08999 * 109.47181 * 30.01834 * 1 2 3 30 30 H 1.09002 * 109.47437 * 150.02415 * 1 2 3 31 31 H 1.08002 * 120.35933 * 359.95329 * 3 2 1 32 32 H 1.09000 * 109.46220 * 305.85431 * 7 6 5 33 33 H 1.08996 * 109.46724 * 65.82281 * 7 6 5 34 34 H 1.09009 * 109.50332 * 180.87695 * 8 7 6 35 35 H 1.09003 * 109.54094 * 60.78248 * 8 7 6 36 36 H 1.09005 * 109.52293 * 297.74566 * 9 8 7 37 37 H 1.09004 * 109.52518 * 177.56288 * 9 8 7 38 38 H 0.97001 * 120.00413 * 180.02562 * 15 14 12 39 39 H 1.09003 * 109.46382 * 294.18294 * 20 6 5 40 40 H 1.09000 * 109.45884 * 54.15220 * 20 6 5 41 41 H 0.96995 * 120.00158 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47212 * 300.00323 * 24 23 22 43 43 H 1.09001 * 109.46577 * 60.00398 * 24 23 22 44 44 H 1.09004 * 115.55402 * 29.33356 * 25 24 23 45 45 H 1.09001 * 117.49586 * 0.02562 * 26 25 24 46 46 H 1.08995 * 117.49974 * 145.02135 * 26 25 24 47 47 H 1.09000 * 117.49814 * 252.50944 * 27 26 25 48 48 H 1.08998 * 117.51550 * 107.48389 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2133 1.1870 0.0000 4 7 3.5377 1.1531 0.0005 5 6 4.1895 -0.0006 0.0015 6 7 5.5735 0.0064 0.0026 7 6 6.1044 -0.7622 -1.1304 8 6 7.6277 -0.8552 -1.0163 9 6 8.2212 0.5563 -1.0101 10 6 7.6157 1.3510 0.1502 11 1 7.8807 0.8753 1.0944 12 6 8.1503 2.7599 0.1281 13 1 8.8542 3.0584 -0.6345 14 6 7.7408 3.6675 1.0817 15 7 6.8833 3.3041 2.0103 16 14 8.4040 5.4137 1.0548 17 1 7.5192 6.2665 0.2210 18 1 8.4455 5.9487 2.4395 19 1 9.7743 5.4140 0.4827 20 6 6.0929 1.3800 0.0017 21 7 3.5497 -1.1601 0.0076 22 6 2.2210 -1.2001 0.0015 23 7 1.5544 -2.4145 0.0020 24 6 2.3142 -3.6671 0.0031 25 6 1.3453 -4.8512 0.0028 26 6 1.3637 -5.7793 1.2190 27 6 1.9444 -6.2542 -0.1144 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6916 2.1326 -0.0008 32 1 5.6776 -1.7651 -1.1207 33 1 5.8398 -0.2641 -2.0631 34 1 8.0229 -1.4124 -1.8657 35 1 7.8935 -1.3658 -0.0907 36 1 7.9894 1.0531 -1.9522 37 1 9.3025 0.4963 -0.8854 38 1 6.5949 3.9428 2.6809 39 1 5.8282 1.8678 -0.9364 40 1 5.6577 1.9333 0.8340 41 1 0.5847 -2.4355 -0.0021 42 1 2.9424 -3.7118 -0.8866 43 1 2.9416 -3.7107 0.8934 44 1 0.3844 -4.6724 -0.4797 45 1 2.0657 -5.5461 2.0195 46 1 0.4147 -6.2111 1.5370 47 1 1.3776 -6.9984 -0.6738 48 1 3.0288 -6.3335 -0.1917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740365.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:05 Heat of formation + Delta-G solvation = 66.255613 kcal Electronic energy + Delta-G solvation = -26743.020538 eV Core-core repulsion = 23218.985291 eV Total energy + Delta-G solvation = -3524.035248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.12642 -39.86756 -38.77562 -36.74675 -35.58969 -34.48282 -33.39176 -32.66202 -31.36800 -28.21152 -27.52110 -26.94967 -25.13631 -24.18624 -23.24787 -23.01460 -22.74890 -21.62808 -20.48762 -19.17738 -18.59249 -18.19798 -16.95148 -16.82841 -16.48744 -16.36146 -15.64434 -15.40804 -15.32857 -15.13440 -14.94795 -14.79865 -14.49979 -14.43546 -14.30501 -14.07636 -13.66400 -13.41516 -13.12008 -12.86299 -12.58648 -12.43741 -12.36807 -12.28559 -12.19315 -12.15054 -11.82434 -11.67641 -11.48277 -11.32706 -11.08359 -10.91024 -10.83354 -10.82176 -10.43649 -9.94540 -9.50084 -8.76555 -8.06366 -6.22183 0.16816 0.54654 1.42474 1.43291 1.53783 1.96331 2.43602 2.53631 2.89379 2.96527 3.21702 3.45444 3.72116 3.87530 3.94117 4.00104 4.08645 4.09829 4.15923 4.21951 4.23778 4.30109 4.38467 4.52409 4.68976 4.76184 4.79205 4.80836 4.83848 4.86697 4.93122 5.02831 5.03395 5.06479 5.08313 5.21239 5.25136 5.26527 5.27535 5.34690 5.45159 5.61669 5.70429 5.88913 5.93426 6.02791 6.18210 6.38860 6.47677 6.79901 6.90453 7.46445 7.50476 8.97718 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.016919 B = 0.003342 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.549445 B = 8375.536043 C = 9503.030373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.285 4.285 3 C 0.173 3.827 4 N -0.614 5.614 5 C 0.514 3.486 6 N -0.476 5.476 7 C 0.079 3.921 8 C -0.107 4.107 9 C -0.108 4.108 10 C 0.046 3.954 11 H -0.003 1.003 12 C -0.536 4.536 13 H 0.058 0.942 14 C 0.013 3.987 15 N -0.912 5.912 16 Si 0.957 3.043 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.107 3.893 21 N -0.600 5.600 22 C 0.441 3.559 23 N -0.695 5.695 24 C 0.166 3.834 25 C -0.170 4.170 26 C -0.178 4.178 27 C -0.167 4.167 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.182 0.818 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.259 0.741 39 H 0.003 0.997 40 H 0.084 0.916 41 H 0.423 0.577 42 H 0.056 0.944 43 H 0.047 0.953 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 -16.310 -6.074 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.296 4.296 3 C 0.011 3.989 4 N -0.338 5.338 5 C 0.157 3.843 6 N -0.195 5.195 7 C -0.046 4.046 8 C -0.144 4.144 9 C -0.146 4.146 10 C 0.027 3.973 11 H 0.015 0.985 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.186 4.186 15 N -0.551 5.551 16 Si 0.782 3.218 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.020 4.020 21 N -0.330 5.330 22 C 0.194 3.806 23 N -0.332 5.332 24 C 0.041 3.959 25 C -0.189 4.189 26 C -0.214 4.214 27 C -0.204 4.204 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.199 0.801 32 H 0.109 0.891 33 H 0.047 0.953 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.102 0.898 41 H 0.264 0.736 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.144 0.856 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.155 -16.641 -5.492 23.168 hybrid contribution -0.842 1.603 -0.052 1.812 sum -15.997 -15.038 -5.544 22.645 Atomic orbital electron populations 1.20442 0.86512 1.03945 1.02959 1.21081 1.00187 0.92211 1.16121 1.23153 0.88118 0.99124 0.88507 1.68511 1.11735 1.29685 1.23842 1.20893 0.91061 0.83841 0.88544 1.58529 1.01028 1.18329 1.41630 1.22081 0.96788 0.97458 0.88322 1.21622 0.92585 0.97350 1.02880 1.21619 0.99654 0.94971 0.98353 1.18736 0.90494 0.94441 0.93597 0.98451 1.21482 1.26235 0.96757 1.12957 0.92335 1.25823 0.95153 1.02704 0.94910 1.70050 1.32886 1.35978 1.16149 0.85579 0.79017 0.79982 0.77207 1.20261 1.20957 1.18912 1.21940 0.97435 0.82928 0.99678 1.67397 1.08928 1.28942 1.27756 1.18425 0.87400 0.87494 0.87316 1.44367 1.08788 1.01077 1.78918 1.20752 0.93075 0.81155 1.00869 1.22394 1.01182 0.90596 1.04688 1.23137 1.03593 1.03169 0.91546 1.23036 1.01320 0.95659 1.00383 0.90619 0.89897 0.90507 0.80064 0.89148 0.95325 0.88365 0.91888 0.93411 0.92199 0.93144 0.97835 0.89823 0.73641 0.92564 0.93479 0.85580 0.89550 0.87163 0.86832 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 9.64 71.24 0.69 -0.59 16 2 C -0.28 -7.79 5.93 -19.55 -0.12 -7.91 16 3 C 0.17 5.83 10.98 84.57 0.93 6.76 16 4 N -0.61 -27.29 8.67 -198.26 -1.72 -29.01 16 5 C 0.51 22.92 7.17 261.51 1.87 24.80 16 6 N -0.48 -22.41 4.72 -708.99 -3.34 -25.75 16 7 C 0.08 3.08 5.33 86.33 0.46 3.54 16 8 C -0.11 -3.83 6.09 30.65 0.19 -3.64 16 9 C -0.11 -4.66 5.22 30.67 0.16 -4.50 16 10 C 0.05 2.50 2.27 -11.49 -0.03 2.47 16 11 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 12 C -0.54 -30.80 8.56 25.60 0.22 -30.58 16 13 H 0.06 3.25 7.74 -2.92 -0.02 3.23 16 14 C 0.01 0.78 5.30 84.65 0.45 1.23 16 15 N -0.91 -55.70 11.33 21.45 0.24 -55.46 16 16 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 20 C 0.11 5.73 3.68 86.33 0.32 6.04 16 21 N -0.60 -22.99 8.92 -195.57 -1.74 -24.74 16 22 C 0.44 13.36 7.49 133.19 1.00 14.36 16 23 N -0.69 -14.77 5.61 -344.62 -1.94 -16.71 16 24 C 0.17 3.40 6.01 86.38 0.52 3.92 16 25 C -0.17 -2.28 5.85 -10.79 -0.06 -2.34 16 26 C -0.18 -2.24 10.18 30.59 0.31 -1.93 16 27 C -0.17 -2.00 10.25 30.60 0.31 -1.68 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.08 0.88 6.66 -2.39 -0.02 0.87 16 31 H 0.18 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.09 3.23 7.55 -2.39 -0.02 3.21 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.00 0.19 8.10 -2.39 -0.02 0.17 16 40 H 0.08 5.14 5.63 -2.39 -0.01 5.12 16 41 H 0.42 6.15 6.51 -92.71 -0.60 5.54 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.05 1.18 7.88 -2.39 -0.02 1.16 16 44 H 0.13 1.24 8.04 -2.39 -0.02 1.22 16 45 H 0.09 1.30 8.03 -2.39 -0.02 1.28 16 46 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.43 380.24 1.09 -72.34 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.34 Total: 22.14 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 7.22 Total: 9.94 kcal Atomic # 7 Polarization: -143.17 SS G_CDS: -8.50 Total: -151.67 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.43 1.09 -72.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740365.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.593 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds