Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38125 * 120.75212 * 2 1 4 4 N 1.32489 * 119.29244 * 179.72605 * 3 2 1 5 5 C 1.32500 * 120.92959 * 0.50139 * 4 3 2 6 6 N 1.38395 * 119.17946 * 179.76043 * 5 4 3 7 7 C 1.46851 * 110.99648 * 235.52363 * 6 5 4 8 8 C 1.53040 * 109.51805 * 185.84062 * 7 6 5 9 9 C 1.53122 * 109.27884 * 300.81551 * 8 7 6 10 10 C 1.53103 * 109.15222 * 57.65876 * 9 8 7 11 11 H 1.09000 * 109.50786 * 62.28832 * 10 9 8 12 12 C 1.50698 * 109.48599 * 182.40020 * 10 9 8 13 13 H 1.07997 * 120.00302 * 359.80783 * 12 10 9 14 14 C 1.37882 * 119.99756 * 179.80814 * 12 10 9 15 15 N 1.31516 * 120.00077 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00089 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46723 * 89.99893 * 16 14 12 18 18 H 1.48494 * 109.47358 * 209.99647 * 16 14 12 19 19 H 1.48499 * 109.47167 * 330.00217 * 16 14 12 20 20 C 1.46841 * 110.99808 * 359.72927 * 6 5 4 21 21 N 1.32443 * 121.64155 * 359.48957 * 5 4 3 22 22 C 1.32928 * 120.61371 * 0.24651 * 21 5 4 23 23 N 1.38536 * 120.48505 * 180.02562 * 22 21 5 24 24 C 1.48525 * 111.00105 * 279.62918 * 23 22 21 25 25 C 1.54937 * 103.22759 * 159.71963 * 24 23 22 26 26 C 1.54597 * 102.92086 * 322.58381 * 25 24 23 27 27 C 1.47901 * 110.99798 * 37.02456 * 23 22 21 28 28 H 1.08994 * 109.47597 * 264.74995 * 1 2 3 29 29 H 1.09001 * 109.47273 * 24.75991 * 1 2 3 30 30 H 1.09008 * 109.46767 * 144.75212 * 1 2 3 31 31 H 1.08006 * 120.35564 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46350 * 305.84867 * 7 6 5 33 33 H 1.08990 * 109.46693 * 65.82768 * 7 6 5 34 34 H 1.08995 * 109.50567 * 60.75882 * 8 7 6 35 35 H 1.08996 * 109.50455 * 180.87953 * 8 7 6 36 36 H 1.09003 * 109.52512 * 177.56112 * 9 8 7 37 37 H 1.09003 * 109.52407 * 297.75788 * 9 8 7 38 38 H 0.97001 * 120.00327 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46951 * 294.17663 * 20 6 5 40 40 H 1.09006 * 109.46600 * 54.15980 * 20 6 5 41 41 H 1.09001 * 110.66870 * 278.15020 * 24 23 22 42 42 H 1.08999 * 110.66911 * 41.28259 * 24 23 22 43 43 H 1.08998 * 110.72597 * 204.22208 * 25 24 23 44 44 H 1.09005 * 110.72265 * 80.94389 * 25 24 23 45 45 H 1.08993 * 110.30991 * 263.03949 * 26 25 24 46 46 H 1.09003 * 110.30482 * 140.87138 * 26 25 24 47 47 H 1.09003 * 109.91831 * 333.51163 * 27 23 22 48 48 H 1.09004 * 109.92122 * 94.79893 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2132 1.1870 0.0000 4 7 3.5377 1.1533 0.0055 5 6 4.1896 -0.0003 0.0011 6 7 5.5735 0.0068 0.0021 7 6 6.1044 -0.7618 -1.1310 8 6 7.6277 -0.8547 -1.0170 9 6 8.2213 0.5568 -1.0107 10 6 7.6157 1.3512 0.1495 11 1 7.8807 0.8756 1.0938 12 6 8.1504 2.7600 0.1274 13 1 8.8542 3.0585 -0.6354 14 6 7.7410 3.6678 1.0810 15 7 6.8836 3.3044 2.0097 16 14 8.4043 5.4139 1.0541 17 1 7.5195 6.2666 0.2203 18 1 8.4461 5.9490 2.4386 19 1 9.7746 5.4141 0.4817 20 6 6.0927 1.3804 0.0018 21 7 3.5498 -1.1599 0.0010 22 6 2.2211 -1.2000 0.0006 23 7 1.5546 -2.4144 0.0011 24 6 1.5023 -2.9935 -1.3656 25 6 1.2317 -4.4964 -1.1038 26 6 2.0669 -4.7821 0.1654 27 6 2.2657 -3.4089 0.8334 28 1 -0.3634 -0.0940 1.0233 29 1 -0.3634 0.9332 -0.4304 30 1 -0.3633 -0.8393 -0.5931 31 1 1.6914 2.1327 -0.0004 32 1 5.6777 -1.7648 -1.1213 33 1 5.8398 -0.2636 -2.0636 34 1 7.8929 -1.3650 -0.0911 35 1 8.0230 -1.4118 -1.8663 36 1 9.3025 0.4968 -0.8861 37 1 7.9892 1.0537 -1.9528 38 1 6.5959 3.9429 2.6808 39 1 5.8281 1.8686 -0.9362 40 1 5.6576 1.9333 0.8344 41 1 0.6888 -2.5506 -1.9403 42 1 2.4549 -2.8576 -1.8777 43 1 1.5807 -5.1026 -1.9398 44 1 0.1722 -4.6705 -0.9157 45 1 3.0302 -5.2143 -0.1050 46 1 1.5244 -5.4522 0.8323 47 1 3.3277 -3.1667 0.8754 48 1 1.8449 -3.4207 1.8389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = 69.957004 kcal Electronic energy + Delta-G solvation = -27467.961185 eV Core-core repulsion = 23944.086441 eV Total energy + Delta-G solvation = -3523.874744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.15081 -39.08145 -37.78073 -34.32005 -33.68449 -32.81320 -31.55763 -30.53665 -29.52663 -29.04019 -26.47029 -25.12610 -24.06937 -23.62456 -21.88458 -21.41316 -20.98086 -20.80370 -18.77745 -17.65198 -17.47577 -16.33312 -15.78615 -15.46960 -15.07369 -14.50338 -14.24731 -14.11077 -14.05649 -13.66743 -13.48696 -13.37716 -13.15760 -12.76467 -12.63379 -12.38930 -12.33670 -12.20493 -12.06958 -11.83990 -11.53007 -11.37232 -10.97705 -10.80576 -10.76408 -10.67819 -10.48550 -10.28250 -10.21424 -10.18789 -9.73149 -9.32432 -9.09509 -8.95412 -8.74734 -8.63674 -8.33373 -7.59927 -5.97475 -4.04964 1.28447 1.40658 3.32307 3.39306 3.41888 3.51017 3.82690 4.07289 4.40810 4.45213 4.57805 4.65552 4.78053 5.09351 5.14416 5.19809 5.23925 5.30552 5.34690 5.37370 5.53528 5.55797 5.57447 5.62383 5.68939 5.74655 5.81378 5.83342 5.92631 5.93932 6.03768 6.10613 6.16406 6.33264 6.37649 6.47829 6.52049 6.63831 6.73386 6.84338 6.98502 7.09006 7.15819 7.29882 7.40867 7.74218 7.92547 8.03053 8.14391 8.42384 8.67374 8.99102 9.60282 11.08080 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.003737 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.624583 B = 7490.439070 C = 8518.345115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.221 4.221 3 C 0.175 3.825 4 N -0.537 5.537 5 C 0.514 3.486 6 N -0.459 5.459 7 C 0.076 3.924 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.051 3.949 11 H 0.034 0.966 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.076 3.924 21 N -0.566 5.566 22 C 0.351 3.649 23 N -0.463 5.463 24 C 0.044 3.956 25 C -0.120 4.120 26 C -0.128 4.128 27 C 0.031 3.969 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.122 0.878 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 -13.240 -6.181 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.229 4.229 3 C 0.007 3.993 4 N -0.256 5.256 5 C 0.158 3.842 6 N -0.177 5.177 7 C -0.050 4.050 8 C -0.154 4.154 9 C -0.152 4.152 10 C 0.032 3.968 11 H 0.052 0.948 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.048 4.048 21 N -0.289 5.289 22 C 0.111 3.889 23 N -0.185 5.185 24 C -0.082 4.082 25 C -0.158 4.158 26 C -0.166 4.166 27 C -0.096 4.096 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.644 -13.291 -5.390 19.120 hybrid contribution -0.052 1.244 -0.602 1.383 sum -12.696 -12.047 -5.992 18.499 Atomic orbital electron populations 1.20338 0.89392 1.01926 1.02220 1.21022 0.98639 0.93156 1.10068 1.22942 0.89186 0.97612 0.89529 1.68614 1.09600 1.29402 1.17994 1.21125 0.91600 0.83165 0.88350 1.58620 0.99343 1.20114 1.39667 1.22023 0.96390 0.97245 0.89382 1.21656 0.93249 0.99158 1.01356 1.21738 0.99453 0.93587 1.00469 1.18776 0.89652 0.94878 0.93540 0.94750 1.21103 1.26145 0.95387 1.12935 0.92426 1.25007 0.94921 0.98652 0.95218 1.69868 1.31833 1.34860 1.15527 0.86604 0.79341 0.84910 0.77204 1.20681 1.21239 1.19943 1.22618 0.98305 0.81288 1.02635 1.67913 1.09734 1.30367 1.20842 1.19853 0.86676 0.91598 0.90819 1.62720 1.45273 1.00784 1.09754 1.23247 1.01467 0.94601 0.88911 1.22483 1.00844 0.94706 0.97816 1.22382 1.00404 0.96838 0.96984 1.22957 0.99825 0.89837 0.96988 0.91563 0.92214 0.91348 0.81903 0.90709 0.94878 0.91452 0.92409 0.92847 0.93471 0.92875 0.95614 0.86021 0.89697 0.92715 0.90755 0.90561 0.91201 0.90962 0.90225 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.77 36.00 0.35 -0.51 16 2 C -0.22 -3.23 5.93 -104.14 -0.62 -3.85 16 3 C 0.18 2.87 10.96 -17.31 -0.19 2.68 16 4 N -0.54 -11.15 8.67 -14.02 -0.12 -11.27 16 5 C 0.51 10.77 7.18 -322.88 -2.32 8.45 16 6 N -0.46 -10.13 4.72 -175.44 -0.83 -10.95 16 7 C 0.08 1.43 5.33 -3.83 -0.02 1.41 16 8 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 9 C -0.11 -2.41 5.22 -26.61 -0.14 -2.54 16 10 C 0.05 1.28 2.26 -91.70 -0.21 1.08 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -25.56 11.33 55.43 0.63 -24.94 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.08 1.90 3.68 -3.84 -0.01 1.89 16 21 N -0.57 -10.46 8.02 -13.17 -0.11 -10.56 16 22 C 0.35 5.54 5.55 -154.83 -0.86 4.68 16 23 N -0.46 -5.95 4.44 -169.08 -0.75 -6.70 16 24 C 0.04 0.47 6.50 -1.90 -0.01 0.46 16 25 C -0.12 -1.00 7.06 -24.87 -0.18 -1.17 16 26 C -0.13 -1.17 6.93 -25.38 -0.18 -1.35 16 27 C 0.03 0.38 6.60 -2.76 -0.02 0.36 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.07 0.69 7.72 -51.92 -0.40 0.28 16 31 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 32 H 0.07 1.31 7.55 -51.93 -0.39 0.92 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 39 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.12 3.44 5.63 -51.93 -0.29 3.15 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.67 7.99 -51.93 -0.42 0.26 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 1.19 6.59 -51.93 -0.34 0.85 16 48 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 372.57 15.07 5.61 5.61 Total: -1.00 -30.55 372.57 -13.67 -44.22 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -8.14 Total: 1.72 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.95 Total: -3.49 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -1.18 Total: -64.41 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.55 -13.67 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.178 kcal (2) G-P(sol) polarization free energy of solvation -30.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds