Wall clock time and date at job start Tue Mar 31 2020 11:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38125 * 120.75212 * 2 1 4 4 N 1.32489 * 119.29244 * 179.72605 * 3 2 1 5 5 C 1.32500 * 120.92959 * 0.50139 * 4 3 2 6 6 N 1.38395 * 119.17946 * 179.76043 * 5 4 3 7 7 C 1.46851 * 110.99648 * 235.52363 * 6 5 4 8 8 C 1.53040 * 109.51805 * 185.84062 * 7 6 5 9 9 C 1.53122 * 109.27884 * 300.81551 * 8 7 6 10 10 C 1.53103 * 109.15222 * 57.65876 * 9 8 7 11 11 H 1.09000 * 109.50786 * 62.28832 * 10 9 8 12 12 C 1.50698 * 109.48599 * 182.40020 * 10 9 8 13 13 H 1.07997 * 120.00302 * 359.80783 * 12 10 9 14 14 C 1.37882 * 119.99756 * 179.80814 * 12 10 9 15 15 N 1.31516 * 120.00077 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00089 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46723 * 89.99893 * 16 14 12 18 18 H 1.48494 * 109.47358 * 209.99647 * 16 14 12 19 19 H 1.48499 * 109.47167 * 330.00217 * 16 14 12 20 20 C 1.46841 * 110.99808 * 359.72927 * 6 5 4 21 21 N 1.32443 * 121.64155 * 359.48957 * 5 4 3 22 22 C 1.32928 * 120.61371 * 0.24651 * 21 5 4 23 23 N 1.38536 * 120.48505 * 180.02562 * 22 21 5 24 24 C 1.48525 * 111.00105 * 279.62918 * 23 22 21 25 25 C 1.54937 * 103.22759 * 159.71963 * 24 23 22 26 26 C 1.54597 * 102.92086 * 322.58381 * 25 24 23 27 27 C 1.47901 * 110.99798 * 37.02456 * 23 22 21 28 28 H 1.08994 * 109.47597 * 264.74995 * 1 2 3 29 29 H 1.09001 * 109.47273 * 24.75991 * 1 2 3 30 30 H 1.09008 * 109.46767 * 144.75212 * 1 2 3 31 31 H 1.08006 * 120.35564 * 359.97438 * 3 2 1 32 32 H 1.09002 * 109.46350 * 305.84867 * 7 6 5 33 33 H 1.08990 * 109.46693 * 65.82768 * 7 6 5 34 34 H 1.08995 * 109.50567 * 60.75882 * 8 7 6 35 35 H 1.08996 * 109.50455 * 180.87953 * 8 7 6 36 36 H 1.09003 * 109.52512 * 177.56112 * 9 8 7 37 37 H 1.09003 * 109.52407 * 297.75788 * 9 8 7 38 38 H 0.97001 * 120.00327 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46951 * 294.17663 * 20 6 5 40 40 H 1.09006 * 109.46600 * 54.15980 * 20 6 5 41 41 H 1.09001 * 110.66870 * 278.15020 * 24 23 22 42 42 H 1.08999 * 110.66911 * 41.28259 * 24 23 22 43 43 H 1.08998 * 110.72597 * 204.22208 * 25 24 23 44 44 H 1.09005 * 110.72265 * 80.94389 * 25 24 23 45 45 H 1.08993 * 110.30991 * 263.03949 * 26 25 24 46 46 H 1.09003 * 110.30482 * 140.87138 * 26 25 24 47 47 H 1.09003 * 109.91831 * 333.51163 * 27 23 22 48 48 H 1.09004 * 109.92122 * 94.79893 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2132 1.1870 0.0000 4 7 3.5377 1.1533 0.0055 5 6 4.1896 -0.0003 0.0011 6 7 5.5735 0.0068 0.0021 7 6 6.1044 -0.7618 -1.1310 8 6 7.6277 -0.8547 -1.0170 9 6 8.2213 0.5568 -1.0107 10 6 7.6157 1.3512 0.1495 11 1 7.8807 0.8756 1.0938 12 6 8.1504 2.7600 0.1274 13 1 8.8542 3.0585 -0.6354 14 6 7.7410 3.6678 1.0810 15 7 6.8836 3.3044 2.0097 16 14 8.4043 5.4139 1.0541 17 1 7.5195 6.2666 0.2203 18 1 8.4461 5.9490 2.4386 19 1 9.7746 5.4141 0.4817 20 6 6.0927 1.3804 0.0018 21 7 3.5498 -1.1599 0.0010 22 6 2.2211 -1.2000 0.0006 23 7 1.5546 -2.4144 0.0011 24 6 1.5023 -2.9935 -1.3656 25 6 1.2317 -4.4964 -1.1038 26 6 2.0669 -4.7821 0.1654 27 6 2.2657 -3.4089 0.8334 28 1 -0.3634 -0.0940 1.0233 29 1 -0.3634 0.9332 -0.4304 30 1 -0.3633 -0.8393 -0.5931 31 1 1.6914 2.1327 -0.0004 32 1 5.6777 -1.7648 -1.1213 33 1 5.8398 -0.2636 -2.0636 34 1 7.8929 -1.3650 -0.0911 35 1 8.0230 -1.4118 -1.8663 36 1 9.3025 0.4968 -0.8861 37 1 7.9892 1.0537 -1.9528 38 1 6.5959 3.9429 2.6808 39 1 5.8281 1.8686 -0.9362 40 1 5.6576 1.9333 0.8344 41 1 0.6888 -2.5506 -1.9403 42 1 2.4549 -2.8576 -1.8777 43 1 1.5807 -5.1026 -1.9398 44 1 0.1722 -4.6705 -0.9157 45 1 3.0302 -5.2143 -0.1050 46 1 1.5244 -5.4522 0.8323 47 1 3.3277 -3.1667 0.8754 48 1 1.8449 -3.4207 1.8389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740503.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:49 Heat of formation + Delta-G solvation = 53.951795 kcal Electronic energy + Delta-G solvation = -27468.655223 eV Core-core repulsion = 23944.086441 eV Total energy + Delta-G solvation = -3524.568781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47722 -40.35426 -39.17877 -35.90398 -34.95167 -34.55945 -33.04761 -31.74052 -31.22372 -29.90871 -27.71217 -27.07975 -25.39020 -25.11978 -23.35078 -22.78759 -22.10644 -21.79281 -20.51466 -19.13402 -18.79176 -18.16520 -17.02839 -16.67530 -16.49647 -16.36937 -15.55638 -15.44275 -15.34979 -15.09181 -14.91510 -14.60566 -14.44084 -14.22656 -14.05536 -13.68751 -13.60133 -13.41549 -13.17931 -12.99166 -12.88452 -12.62312 -12.37019 -12.29723 -12.20219 -12.15946 -11.96863 -11.84489 -11.69441 -11.50267 -11.41000 -10.94836 -10.89168 -10.78133 -10.43921 -10.13959 -9.86568 -9.10529 -8.09783 -6.25739 -0.04068 0.08971 1.41233 1.41681 1.52397 2.19046 2.43183 2.58856 2.71672 3.17264 3.27431 3.62083 3.71511 3.84819 3.91463 4.02685 4.03849 4.12618 4.13925 4.24092 4.30249 4.32169 4.45041 4.52938 4.69393 4.72908 4.77521 4.85264 4.88473 4.91223 4.93154 4.97157 5.00773 5.04386 5.12592 5.15078 5.17939 5.23039 5.23511 5.29633 5.42108 5.56472 5.58138 5.71581 5.85816 5.92129 5.97755 6.11352 6.35476 6.42085 6.85819 7.22414 7.43463 8.94404 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018592 B = 0.003737 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.624583 B = 7490.439070 C = 8518.345115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.205 4.205 3 C 0.160 3.840 4 N -0.579 5.579 5 C 0.488 3.512 6 N -0.476 5.476 7 C 0.079 3.921 8 C -0.107 4.107 9 C -0.108 4.108 10 C 0.047 3.953 11 H -0.003 1.003 12 C -0.537 4.537 13 H 0.059 0.941 14 C 0.014 3.986 15 N -0.913 5.913 16 Si 0.957 3.043 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.105 3.895 21 N -0.571 5.571 22 C 0.340 3.660 23 N -0.456 5.456 24 C 0.040 3.960 25 C -0.110 4.110 26 C -0.122 4.122 27 C 0.027 3.973 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.192 0.808 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.260 0.740 39 H 0.005 0.995 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.166 -14.561 -7.519 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.213 4.213 3 C -0.006 4.006 4 N -0.299 5.299 5 C 0.131 3.869 6 N -0.195 5.195 7 C -0.046 4.046 8 C -0.144 4.144 9 C -0.146 4.146 10 C 0.028 3.972 11 H 0.015 0.985 12 C -0.575 4.575 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.552 5.552 16 Si 0.783 3.217 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.021 4.021 21 N -0.294 5.294 22 C 0.100 3.900 23 N -0.178 5.178 24 C -0.086 4.086 25 C -0.147 4.147 26 C -0.160 4.160 27 C -0.100 4.100 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.209 0.791 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.102 0.898 41 H 0.119 0.881 42 H 0.053 0.947 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.510 -14.636 -6.744 21.685 hybrid contribution 0.362 1.587 -0.166 1.637 sum -14.148 -13.048 -6.910 20.450 Atomic orbital electron populations 1.20438 0.85979 1.03763 1.03171 1.21488 1.00835 0.91986 1.06954 1.23499 0.88030 0.99690 0.89371 1.68531 1.11932 1.29986 1.19440 1.21070 0.91293 0.84117 0.90392 1.58599 1.00811 1.18503 1.41606 1.22085 0.96932 0.97286 0.88327 1.21621 0.92457 0.97452 1.02908 1.21618 0.99717 0.94874 0.98373 1.18728 0.90391 0.94508 0.93612 0.98466 1.21485 1.26300 0.96711 1.13033 0.92284 1.25822 0.95095 1.02737 0.94841 1.70045 1.32922 1.36052 1.16132 0.85570 0.79047 0.79894 0.77239 1.20190 1.20958 1.18898 1.21970 0.97626 0.82787 0.99725 1.67914 1.11261 1.29254 1.20977 1.20384 0.86032 0.93426 0.90125 1.62872 1.43956 0.99936 1.11066 1.23397 1.01096 0.96522 0.87590 1.22497 1.01703 0.92777 0.97769 1.22374 1.01042 0.94996 0.97611 1.22992 0.97817 0.91628 0.97594 0.90673 0.89899 0.90139 0.79076 0.89399 0.95195 0.91917 0.88307 0.92131 0.93333 0.93100 0.97689 0.89776 0.88056 0.94695 0.89007 0.88870 0.91219 0.89027 0.93391 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 9.77 71.24 0.70 -0.69 16 2 C -0.21 -5.76 5.93 -19.55 -0.12 -5.88 16 3 C 0.16 5.23 10.96 84.57 0.93 6.16 16 4 N -0.58 -25.08 8.67 -198.26 -1.72 -26.80 16 5 C 0.49 21.35 7.18 261.51 1.88 23.23 16 6 N -0.48 -22.03 4.72 -708.98 -3.34 -25.37 16 7 C 0.08 3.03 5.33 86.33 0.46 3.49 16 8 C -0.11 -3.77 6.09 30.65 0.19 -3.59 16 9 C -0.11 -4.59 5.22 30.67 0.16 -4.43 16 10 C 0.05 2.48 2.26 -11.49 -0.03 2.46 16 11 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 12 C -0.54 -30.54 8.56 25.60 0.22 -30.33 16 13 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 14 C 0.01 0.83 5.30 84.66 0.45 1.27 16 15 N -0.91 -55.22 11.33 21.45 0.24 -54.98 16 16 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.11 5.56 3.68 86.33 0.32 5.88 16 21 N -0.57 -21.61 8.02 -195.57 -1.57 -23.18 16 22 C 0.34 10.58 5.55 133.19 0.74 11.32 16 23 N -0.46 -10.99 4.44 -688.86 -3.06 -14.06 16 24 C 0.04 0.76 6.50 86.65 0.56 1.32 16 25 C -0.11 -1.45 7.06 31.80 0.22 -1.22 16 26 C -0.12 -1.95 6.93 31.47 0.22 -1.73 16 27 C 0.03 0.64 6.60 86.44 0.57 1.21 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 30 H 0.08 1.32 7.72 -2.38 -0.02 1.30 16 31 H 0.19 4.84 8.06 -2.91 -0.02 4.81 16 32 H 0.09 3.10 7.55 -2.39 -0.02 3.08 16 33 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.00 0.26 8.10 -2.39 -0.02 0.24 16 40 H 0.08 5.09 5.63 -2.38 -0.01 5.07 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 0.82 7.99 -2.39 -0.02 0.80 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.05 1.46 6.59 -2.39 -0.02 1.44 16 48 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -71.04 372.57 0.97 -70.07 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.93 Total: 19.05 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 7.46 Total: 8.48 kcal Atomic # 7 Polarization: -134.93 SS G_CDS: -9.45 Total: -144.38 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -71.04 0.97 -70.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740503.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.018 kcal (2) G-P(sol) polarization free energy of solvation -71.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds