Wall clock time and date at job start Tue Mar 31 2020 11:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38132 * 120.75118 * 2 1 4 4 N 1.32494 * 119.28809 * 179.97438 * 3 2 1 5 5 C 1.32495 * 120.93297 * 0.02562 * 4 3 2 6 6 N 1.38392 * 119.17735 * 179.97438 * 5 4 3 7 7 C 1.46843 * 111.00104 * 124.20929 * 6 5 4 8 8 C 1.53032 * 109.52469 * 174.15987 * 7 6 5 9 9 C 1.53116 * 109.27957 * 59.18059 * 8 7 6 10 10 C 1.53113 * 109.15875 * 302.34672 * 9 8 7 11 11 H 1.09003 * 109.53548 * 297.68796 * 10 9 8 12 12 C 1.50702 * 109.50179 * 177.59658 * 10 9 8 13 13 H 1.08002 * 120.00150 * 0.19282 * 12 10 9 14 14 C 1.37881 * 119.99958 * 180.20032 * 12 10 9 15 15 N 1.31511 * 119.99935 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00008 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47449 * 89.99480 * 16 14 12 18 18 H 1.48502 * 109.46772 * 209.99431 * 16 14 12 19 19 H 1.48496 * 109.46948 * 329.99286 * 16 14 12 20 20 C 1.46844 * 111.00209 * 359.97438 * 6 5 4 21 21 N 1.32436 * 121.64426 * 0.02562 * 5 4 3 22 22 C 1.32930 * 120.61578 * 359.97438 * 21 5 4 23 23 N 1.38535 * 120.48789 * 180.02562 * 22 21 5 24 24 C 1.48531 * 110.99811 * 242.60119 * 23 22 21 25 25 C 1.54938 * 103.22496 * 159.71697 * 24 23 22 26 26 C 1.54591 * 102.92457 * 322.58971 * 25 24 23 27 27 C 1.47899 * 111.00017 * 359.97438 * 23 22 21 28 28 H 1.09003 * 109.47394 * 90.00289 * 1 2 3 29 29 H 1.09007 * 109.47018 * 209.99804 * 1 2 3 30 30 H 1.08999 * 109.47856 * 330.00102 * 1 2 3 31 31 H 1.07993 * 120.35660 * 0.24950 * 3 2 1 32 32 H 1.09005 * 109.46517 * 294.18080 * 7 6 5 33 33 H 1.09007 * 109.46362 * 54.14548 * 7 6 5 34 34 H 1.08999 * 109.50623 * 299.23756 * 8 7 6 35 35 H 1.09003 * 109.50639 * 179.12009 * 8 7 6 36 36 H 1.09004 * 109.52506 * 182.44047 * 9 8 7 37 37 H 1.09000 * 109.52060 * 62.25069 * 9 8 7 38 38 H 0.96996 * 120.00100 * 180.02562 * 15 14 12 39 39 H 1.09000 * 109.46485 * 305.85583 * 20 6 5 40 40 H 1.09007 * 109.46123 * 65.82503 * 20 6 5 41 41 H 1.08993 * 110.67048 * 278.15361 * 24 23 22 42 42 H 1.09003 * 110.66588 * 41.29139 * 24 23 22 43 43 H 1.08998 * 110.72442 * 204.22494 * 25 24 23 44 44 H 1.09003 * 110.87390 * 81.01930 * 25 24 23 45 45 H 1.09001 * 110.30563 * 263.03878 * 26 25 24 46 46 H 1.09003 * 110.39623 * 140.91192 * 26 25 24 47 47 H 1.08998 * 109.91785 * 333.51043 * 27 23 22 48 48 H 1.08998 * 109.91817 * 94.80471 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2132 1.1871 0.0000 4 7 3.5377 1.1533 0.0005 5 6 4.1896 -0.0003 0.0005 6 7 5.5735 0.0068 0.0005 7 6 6.1036 -0.7612 1.1342 8 6 7.6270 -0.8542 1.0214 9 6 8.2205 0.5573 1.0149 10 6 7.6157 1.3514 -0.1462 11 1 7.8814 0.8759 -1.0904 12 6 8.1503 2.7602 -0.1245 13 1 8.8536 3.0593 0.6387 14 6 7.7413 3.6675 -1.0788 15 7 6.8852 3.3033 -2.0082 16 14 8.4044 5.4137 -1.0523 17 1 9.6412 5.4860 -1.8710 18 1 7.3858 6.3384 -1.6114 19 1 8.7132 5.8047 0.3466 20 6 6.0927 1.3804 -0.0001 21 7 3.5498 -1.1598 -0.0005 22 6 2.2211 -1.2000 -0.0010 23 7 1.5546 -2.4144 -0.0016 24 6 0.7396 -2.5738 -1.2330 25 6 0.5211 -4.1053 -1.3178 26 6 1.8723 -4.6750 -0.8285 27 6 2.5101 -3.5434 -0.0020 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3635 0.8899 0.5138 31 1 1.6914 2.1326 0.0041 32 1 5.8382 -0.2627 2.0666 33 1 5.6769 -1.7643 1.1248 34 1 7.8928 -1.3650 0.0959 35 1 8.0216 -1.4109 1.8713 36 1 9.3018 0.4972 0.8910 37 1 7.9878 1.0545 1.9565 38 1 6.5978 3.9414 -2.6798 39 1 5.6581 1.9326 -0.8333 40 1 5.8275 1.8693 0.9374 41 1 -0.2133 -2.0541 -1.1337 42 1 1.2860 -2.2144 -2.1051 43 1 0.3231 -4.4104 -2.3453 44 1 -0.2903 -4.4188 -0.6608 45 1 2.5069 -4.9263 -1.6784 46 1 1.7105 -5.5543 -0.2049 47 1 3.4501 -3.2341 -0.4590 48 1 2.6844 -3.8827 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:52 Heat of formation + Delta-G solvation = 71.809969 kcal Electronic energy + Delta-G solvation = -27455.998426 eV Core-core repulsion = 23932.204033 eV Total energy + Delta-G solvation = -3523.794393 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17920 -39.15464 -37.73704 -34.32664 -33.70070 -32.85701 -31.65092 -30.53876 -29.50877 -29.00025 -26.52788 -25.10487 -24.00277 -23.64811 -21.95639 -21.51117 -20.87933 -20.74007 -18.75596 -17.62806 -17.35931 -16.34206 -15.92122 -15.47153 -15.01962 -14.50706 -14.35250 -14.07597 -13.94454 -13.81584 -13.55404 -13.34608 -13.25966 -12.77210 -12.64046 -12.49345 -12.40604 -12.18368 -12.07099 -11.83188 -11.46954 -11.27125 -10.96232 -10.79956 -10.77572 -10.64789 -10.50071 -10.30020 -10.19224 -10.16455 -9.82699 -9.44269 -9.07483 -8.88710 -8.74695 -8.48048 -8.29926 -7.57127 -5.96658 -4.03893 1.34211 1.48439 3.32649 3.39734 3.42771 3.46828 3.81606 4.16344 4.37099 4.45886 4.50549 4.70721 4.75173 5.04534 5.14142 5.15383 5.22557 5.25608 5.32130 5.38411 5.50284 5.58588 5.59022 5.60013 5.62180 5.67223 5.77419 5.84917 5.87825 5.93947 6.07085 6.09392 6.12013 6.30755 6.39023 6.40568 6.53927 6.66373 6.76364 6.86230 6.98965 7.09613 7.16785 7.37300 7.43659 7.75663 7.94918 8.05417 8.15966 8.44195 8.72906 9.00217 9.61244 11.08952 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.003689 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.298321 B = 7587.395943 C = 8545.169363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.252 4.252 3 C 0.184 3.816 4 N -0.548 5.548 5 C 0.523 3.477 6 N -0.460 5.460 7 C 0.076 3.924 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.050 3.950 11 H 0.034 0.966 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.064 3.936 15 N -0.883 5.883 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.077 3.923 21 N -0.570 5.570 22 C 0.363 3.637 23 N -0.457 5.457 24 C 0.041 3.959 25 C -0.123 4.123 26 C -0.132 4.132 27 C 0.034 3.966 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.026 0.974 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 -13.109 2.993 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.261 4.261 3 C 0.017 3.983 4 N -0.268 5.268 5 C 0.167 3.833 6 N -0.178 5.178 7 C -0.051 4.051 8 C -0.154 4.154 9 C -0.153 4.153 10 C 0.031 3.969 11 H 0.052 0.948 12 C -0.555 4.555 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.521 5.521 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.048 4.048 21 N -0.294 5.294 22 C 0.120 3.880 23 N -0.176 5.176 24 C -0.085 4.085 25 C -0.161 4.161 26 C -0.171 4.171 27 C -0.093 4.093 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.179 0.821 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.114 0.886 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.350 -13.295 2.884 19.060 hybrid contribution -0.344 1.399 -0.077 1.443 sum -13.694 -11.896 2.807 18.355 Atomic orbital electron populations 1.20526 0.89895 1.02826 1.01511 1.20830 0.98245 0.93405 1.13618 1.22835 0.89214 0.97404 0.88843 1.68624 1.09482 1.29289 1.19402 1.21115 0.91587 0.83117 0.87523 1.58559 0.99397 1.20129 1.39709 1.22033 0.96315 0.97363 0.89360 1.21656 0.93297 0.99116 1.01343 1.21737 0.99421 0.93630 1.00469 1.18776 0.89699 0.94860 0.93526 0.94782 1.21109 1.26104 0.95422 1.12871 0.92431 1.25003 0.94899 0.98641 0.95259 1.69868 1.31874 1.34917 1.15471 0.86604 0.78604 0.84647 0.78204 1.20721 1.21232 1.19942 1.22604 0.98223 0.81284 1.02669 1.67831 1.08438 1.29982 1.23151 1.19760 0.87690 0.90667 0.89879 1.61729 1.20308 1.00129 1.35392 1.23407 0.98254 0.97381 0.89449 1.22508 0.98006 0.93848 1.01752 1.22441 0.96410 0.98296 0.99908 1.22894 0.96006 0.88850 1.01578 0.91991 0.90975 0.91798 0.82102 0.94806 0.90541 0.91479 0.92382 0.92877 0.93458 0.92908 0.86054 0.95584 0.88637 0.92670 0.90555 0.90447 0.91172 0.90839 0.89558 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 8.24 36.00 0.30 -0.62 16 2 C -0.25 -3.68 5.78 -104.14 -0.60 -4.28 16 3 C 0.18 3.04 10.98 -17.30 -0.19 2.85 16 4 N -0.55 -11.48 8.67 -14.02 -0.12 -11.60 16 5 C 0.52 11.05 7.17 -322.90 -2.32 8.74 16 6 N -0.46 -10.20 4.71 -175.46 -0.83 -11.02 16 7 C 0.08 1.44 5.33 -3.84 -0.02 1.42 16 8 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 9 C -0.11 -2.42 5.23 -26.61 -0.14 -2.56 16 10 C 0.05 1.28 2.26 -91.70 -0.21 1.08 16 11 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 12 C -0.52 -14.25 8.57 -34.44 -0.29 -14.55 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 15 N -0.88 -25.59 11.33 55.43 0.63 -24.96 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.08 1.93 3.68 -3.84 -0.01 1.92 16 21 N -0.57 -10.65 7.51 -13.17 -0.10 -10.75 16 22 C 0.36 5.77 6.20 -154.83 -0.96 4.81 16 23 N -0.46 -5.87 4.72 -169.10 -0.80 -6.67 16 24 C 0.04 0.42 5.59 -1.90 -0.01 0.40 16 25 C -0.12 -0.98 7.06 -24.87 -0.18 -1.15 16 26 C -0.13 -1.18 6.93 -25.39 -0.18 -1.36 16 27 C 0.03 0.41 6.36 -2.77 -0.02 0.39 16 28 H 0.06 0.55 7.62 -51.93 -0.40 0.16 16 29 H 0.07 0.71 6.91 -51.92 -0.36 0.35 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.36 7.55 -51.93 -0.39 0.96 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 39 H 0.12 3.44 5.63 -51.93 -0.29 3.15 16 40 H 0.03 0.67 8.10 -51.92 -0.42 0.25 16 41 H 0.10 0.82 5.74 -51.93 -0.30 0.52 16 42 H 0.05 0.64 7.99 -51.93 -0.42 0.22 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.09 1.27 6.53 -51.93 -0.34 0.93 16 48 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -30.90 366.42 -13.75 -44.64 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.95 Total: 1.93 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -5.09 Total: -3.49 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.22 Total: -65.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.90 -13.75 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.454 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds