Wall clock time and date at job start Tue Mar 31 2020 11:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31752 * 119.04589 * 2 1 4 4 C 1.33170 * 120.87883 * 180.02562 * 3 2 1 5 5 N 1.38621 * 120.48559 * 180.02562 * 4 3 2 6 6 C 1.48533 * 111.00268 * 242.60797 * 5 4 3 7 7 C 1.54930 * 103.23229 * 159.71847 * 6 5 4 8 8 C 1.54595 * 102.92308 * 322.58805 * 7 6 5 9 9 C 1.47901 * 111.00311 * 0.02562 * 5 4 3 10 10 C 1.39176 * 119.02993 * 359.72994 * 4 3 2 11 11 C 1.39133 * 118.26365 * 0.53003 * 10 4 3 12 12 N 1.38632 * 120.48118 * 179.73841 * 11 10 4 13 13 C 1.46852 * 110.99892 * 303.93455 * 12 11 10 14 14 C 1.53038 * 109.51991 * 174.16312 * 13 12 11 15 15 C 1.53121 * 109.28145 * 59.17795 * 14 13 12 16 16 C 1.53116 * 109.15919 * 302.34666 * 15 14 13 17 17 H 1.09002 * 109.50351 * 297.71191 * 16 15 14 18 18 C 1.50700 * 109.53480 * 177.61205 * 16 15 14 19 19 H 1.07992 * 120.00329 * 240.09746 * 18 16 15 20 20 C 1.37881 * 119.99818 * 60.09632 * 18 16 15 21 21 N 1.31518 * 119.99934 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00022 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46940 * 120.00173 * 22 20 18 25 25 H 1.48504 * 109.47070 * 240.00090 * 22 20 18 26 26 C 1.46851 * 110.99894 * 179.72496 * 12 11 10 27 27 N 1.31734 * 119.03909 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47127 * 269.97635 * 1 2 3 29 29 H 1.09004 * 109.46833 * 29.97941 * 1 2 3 30 30 H 1.09000 * 109.46887 * 149.97726 * 1 2 3 31 31 H 1.09003 * 110.66430 * 278.15590 * 6 5 4 32 32 H 1.09007 * 110.66532 * 41.27936 * 6 5 4 33 33 H 1.09002 * 110.72876 * 204.22867 * 7 6 5 34 34 H 1.09008 * 110.72672 * 80.94363 * 7 6 5 35 35 H 1.09005 * 110.30708 * 263.04147 * 8 7 6 36 36 H 1.08995 * 110.39488 * 140.91377 * 8 7 6 37 37 H 1.09003 * 109.91516 * 333.51329 * 9 5 4 38 38 H 1.09003 * 109.92040 * 94.79984 * 9 5 4 39 39 H 1.07991 * 120.86600 * 180.29149 * 10 4 3 40 40 H 1.08996 * 109.46331 * 294.17655 * 13 12 11 41 41 H 1.09000 * 109.45938 * 54.14643 * 13 12 11 42 42 H 1.09004 * 109.50259 * 179.12052 * 14 13 12 43 43 H 1.09005 * 109.50470 * 299.23445 * 14 13 12 44 44 H 1.08997 * 109.52457 * 182.43793 * 15 14 13 45 45 H 1.09000 * 109.52188 * 62.25069 * 15 14 13 46 46 H 0.97001 * 119.99543 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.46045 * 65.82518 * 26 12 11 48 48 H 1.08998 * 109.45058 * 305.85230 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1518 0.0000 4 6 3.4777 1.1944 -0.0005 5 7 4.1424 2.4109 0.0000 6 6 4.9570 2.5729 -1.2314 7 6 5.1728 4.1049 -1.3147 8 6 3.8205 4.6717 -0.8249 9 6 3.1849 3.5381 0.0018 10 6 4.1917 -0.0003 0.0047 11 6 3.4777 -1.1945 -0.0011 12 7 4.1424 -2.4111 -0.0018 13 6 5.0706 -2.5030 -1.1360 14 6 5.8890 -3.7913 -1.0238 15 6 4.9410 -4.9937 -1.0172 16 6 3.9539 -4.8490 0.1443 17 1 4.4995 -4.8514 1.0880 18 6 2.9794 -5.9984 0.1236 19 1 1.9217 -5.8077 0.0183 20 6 3.4383 -7.2934 0.2392 21 7 4.7264 -7.5256 0.3680 22 14 2.2305 -8.7182 0.2128 23 1 0.8497 -8.1938 0.0583 24 1 2.5489 -9.6159 -0.9263 25 1 2.3327 -9.4774 1.4850 26 6 3.1915 -3.5302 -0.0017 27 7 2.1465 -1.1517 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 5.9109 2.0548 -1.1325 32 1 4.4113 2.2132 -2.1038 33 1 5.3701 4.4114 -2.3420 34 1 5.9832 4.4167 -0.6557 35 1 3.1854 4.9226 -1.6745 36 1 3.9808 5.5507 -0.2006 37 1 2.2451 3.2277 -0.4548 38 1 3.0107 3.8758 1.0234 39 1 5.2716 -0.0003 0.0091 40 1 4.5055 -2.5118 -2.0680 41 1 5.7418 -1.6443 -1.1264 42 1 6.5669 -3.8670 -1.8740 43 1 6.4652 -3.7771 -0.0985 44 1 5.5167 -5.9109 -0.8939 45 1 4.3928 -5.0304 -1.9586 46 1 5.0492 -8.4367 0.4497 47 1 2.6352 -3.5341 -0.9390 48 1 2.4981 -3.4172 0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:29 Heat of formation + Delta-G solvation = 63.403752 kcal Electronic energy + Delta-G solvation = -26957.379364 eV Core-core repulsion = 23433.220450 eV Total energy + Delta-G solvation = -3524.158914 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26791 -39.28091 -38.08236 -34.47307 -33.83757 -32.51788 -30.64168 -30.47977 -29.99907 -29.32872 -27.97449 -25.05741 -24.49677 -23.13760 -22.14226 -21.45947 -21.01818 -20.60355 -18.85032 -17.58448 -17.37908 -16.42662 -16.04273 -15.48206 -15.25291 -15.10300 -14.47882 -14.16606 -14.00578 -13.87851 -13.68215 -13.41346 -13.12826 -12.85541 -12.64080 -12.47911 -12.42341 -12.24918 -12.19283 -11.84520 -11.67025 -11.48718 -10.98971 -10.93086 -10.89220 -10.69235 -10.61057 -10.57868 -10.20108 -9.94158 -9.78886 -9.52096 -9.19560 -9.04588 -8.75026 -8.61406 -8.33093 -7.93092 -6.00072 -4.05580 1.17433 1.34570 3.29927 3.31764 3.38143 3.42682 3.81173 3.95233 4.09353 4.29013 4.42552 4.49823 4.64446 4.75103 5.01465 5.10143 5.20186 5.30312 5.36600 5.41357 5.45519 5.49693 5.50884 5.54002 5.56849 5.61439 5.67317 5.68740 5.73848 5.83558 5.91702 5.92495 6.06403 6.27185 6.30163 6.37667 6.44526 6.52466 6.66970 6.87047 6.92174 7.00241 7.18593 7.33997 7.51674 7.63393 7.73945 8.00380 8.10640 8.40245 8.47272 8.98137 9.58933 11.06428 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.003105 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.848717 B = 9016.118655 C =10014.349737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.360 3.640 3 N -0.583 5.583 4 C 0.356 3.644 5 N -0.460 5.460 6 C 0.045 3.955 7 C -0.123 4.123 8 C -0.133 4.133 9 C 0.035 3.965 10 C -0.266 4.266 11 C 0.383 3.617 12 N -0.470 5.470 13 C 0.070 3.930 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.050 3.950 17 H 0.034 0.966 18 C -0.511 4.511 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.889 5.889 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.078 3.922 27 N -0.564 5.564 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.259 0.741 47 H 0.039 0.961 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.204 21.687 -4.777 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.090 3.910 3 N -0.307 5.307 4 C 0.119 3.881 5 N -0.178 5.178 6 C -0.080 4.080 7 C -0.161 4.161 8 C -0.171 4.171 9 C -0.091 4.091 10 C -0.294 4.294 11 C 0.144 3.856 12 N -0.186 5.186 13 C -0.055 4.055 14 C -0.157 4.157 15 C -0.152 4.152 16 C 0.031 3.969 17 H 0.052 0.948 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.047 4.047 27 N -0.287 5.287 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.059 0.941 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.342 21.449 -3.883 21.800 hybrid contribution -0.430 -0.842 -0.912 1.314 sum -0.772 20.607 -4.795 21.172 Atomic orbital electron populations 1.20529 0.86074 1.03742 1.03708 1.22816 0.97479 0.82542 0.88162 1.68054 1.08539 1.30857 1.23286 1.19846 0.88217 0.90627 0.89400 1.61793 1.20362 1.00100 1.35568 1.23311 0.98000 0.97521 0.89207 1.22516 0.98062 0.93691 1.01866 1.22461 0.96453 0.98361 0.99826 1.22895 0.95735 0.88879 1.01634 1.21627 1.01994 0.90949 1.14865 1.20184 0.87875 0.91082 0.86464 1.58896 1.19011 1.00665 1.39981 1.22223 0.94009 1.00052 0.89242 1.21749 0.98210 0.94511 1.01252 1.21719 0.97594 0.97256 0.98645 1.18775 0.93661 0.89131 0.95298 0.94750 1.21127 0.93264 0.90663 1.49929 0.92503 1.24933 0.95120 0.98764 0.95046 1.69894 1.12532 1.20228 1.50175 0.86543 0.81536 0.82436 0.77537 1.19748 1.21098 1.21036 1.22345 0.92662 0.88664 1.01004 1.68362 1.08918 1.30170 1.21261 0.89755 0.90137 0.89586 0.88981 0.92697 0.90438 0.90276 0.91229 0.90741 0.89813 0.90080 0.83957 0.94140 0.91273 0.92506 0.91612 0.88642 0.94757 0.93078 0.94212 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.31 36.01 0.37 -0.60 16 2 C 0.36 5.73 7.64 -157.28 -1.20 4.53 16 3 N -0.58 -8.94 8.19 -10.03 -0.08 -9.02 16 4 C 0.36 5.31 6.20 -154.72 -0.96 4.35 16 5 N -0.46 -5.63 5.30 -169.11 -0.90 -6.52 16 6 C 0.05 0.43 6.09 -1.90 -0.01 0.42 16 7 C -0.12 -0.88 7.06 -24.87 -0.18 -1.06 16 8 C -0.13 -1.00 6.93 -25.36 -0.18 -1.17 16 9 C 0.04 0.37 6.37 -2.74 -0.02 0.35 16 10 C -0.27 -4.21 8.68 -38.90 -0.34 -4.55 16 11 C 0.38 7.00 6.40 -154.70 -0.99 6.01 16 12 N -0.47 -9.14 4.68 -173.12 -0.81 -9.95 16 13 C 0.07 1.20 5.25 -3.83 -0.02 1.18 16 14 C -0.12 -2.20 6.09 -26.65 -0.16 -2.36 16 15 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 16 C 0.05 1.25 2.26 -91.69 -0.21 1.04 16 17 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.51 -13.98 8.56 -34.44 -0.29 -14.27 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.08 11.36 55.43 0.63 -24.45 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.08 1.74 3.89 -3.83 -0.01 1.72 16 27 N -0.56 -10.38 8.74 -10.03 -0.09 -10.47 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.56 8.00 -51.93 -0.42 0.14 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.98 6.53 -51.93 -0.34 0.64 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.14 2.04 7.23 -52.49 -0.38 1.66 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.00 6.75 -51.93 -0.35 0.65 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.10 2.45 6.16 -51.93 -0.32 2.13 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 48 H 0.07 1.72 7.72 -51.93 -0.40 1.32 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -29.91 371.76 -13.18 -43.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.09 Total: 1.04 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.43 Total: -5.53 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -1.25 Total: -60.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.91 -13.18 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.492 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds