Wall clock time and date at job start Tue Mar 31 2020 11:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31752 * 119.04589 * 2 1 4 4 C 1.33170 * 120.87883 * 180.02562 * 3 2 1 5 5 N 1.38621 * 120.48559 * 180.02562 * 4 3 2 6 6 C 1.48533 * 111.00268 * 242.60797 * 5 4 3 7 7 C 1.54930 * 103.23229 * 159.71847 * 6 5 4 8 8 C 1.54595 * 102.92308 * 322.58805 * 7 6 5 9 9 C 1.47901 * 111.00311 * 0.02562 * 5 4 3 10 10 C 1.39176 * 119.02993 * 359.72994 * 4 3 2 11 11 C 1.39133 * 118.26365 * 0.53003 * 10 4 3 12 12 N 1.38632 * 120.48118 * 179.73841 * 11 10 4 13 13 C 1.46852 * 110.99892 * 303.93455 * 12 11 10 14 14 C 1.53038 * 109.51991 * 174.16312 * 13 12 11 15 15 C 1.53121 * 109.28145 * 59.17795 * 14 13 12 16 16 C 1.53116 * 109.15919 * 302.34666 * 15 14 13 17 17 H 1.09002 * 109.50351 * 297.71191 * 16 15 14 18 18 C 1.50700 * 109.53480 * 177.61205 * 16 15 14 19 19 H 1.07992 * 120.00329 * 240.09746 * 18 16 15 20 20 C 1.37881 * 119.99818 * 60.09632 * 18 16 15 21 21 N 1.31518 * 119.99934 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00022 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47228 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46940 * 120.00173 * 22 20 18 25 25 H 1.48504 * 109.47070 * 240.00090 * 22 20 18 26 26 C 1.46851 * 110.99894 * 179.72496 * 12 11 10 27 27 N 1.31734 * 119.03909 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47127 * 269.97635 * 1 2 3 29 29 H 1.09004 * 109.46833 * 29.97941 * 1 2 3 30 30 H 1.09000 * 109.46887 * 149.97726 * 1 2 3 31 31 H 1.09003 * 110.66430 * 278.15590 * 6 5 4 32 32 H 1.09007 * 110.66532 * 41.27936 * 6 5 4 33 33 H 1.09002 * 110.72876 * 204.22867 * 7 6 5 34 34 H 1.09008 * 110.72672 * 80.94363 * 7 6 5 35 35 H 1.09005 * 110.30708 * 263.04147 * 8 7 6 36 36 H 1.08995 * 110.39488 * 140.91377 * 8 7 6 37 37 H 1.09003 * 109.91516 * 333.51329 * 9 5 4 38 38 H 1.09003 * 109.92040 * 94.79984 * 9 5 4 39 39 H 1.07991 * 120.86600 * 180.29149 * 10 4 3 40 40 H 1.08996 * 109.46331 * 294.17655 * 13 12 11 41 41 H 1.09000 * 109.45938 * 54.14643 * 13 12 11 42 42 H 1.09004 * 109.50259 * 179.12052 * 14 13 12 43 43 H 1.09005 * 109.50470 * 299.23445 * 14 13 12 44 44 H 1.08997 * 109.52457 * 182.43793 * 15 14 13 45 45 H 1.09000 * 109.52188 * 62.25069 * 15 14 13 46 46 H 0.97001 * 119.99543 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.46045 * 65.82518 * 26 12 11 48 48 H 1.08998 * 109.45058 * 305.85230 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1518 0.0000 4 6 3.4777 1.1944 -0.0005 5 7 4.1424 2.4109 0.0000 6 6 4.9570 2.5729 -1.2314 7 6 5.1728 4.1049 -1.3147 8 6 3.8205 4.6717 -0.8249 9 6 3.1849 3.5381 0.0018 10 6 4.1917 -0.0003 0.0047 11 6 3.4777 -1.1945 -0.0011 12 7 4.1424 -2.4111 -0.0018 13 6 5.0706 -2.5030 -1.1360 14 6 5.8890 -3.7913 -1.0238 15 6 4.9410 -4.9937 -1.0172 16 6 3.9539 -4.8490 0.1443 17 1 4.4995 -4.8514 1.0880 18 6 2.9794 -5.9984 0.1236 19 1 1.9217 -5.8077 0.0183 20 6 3.4383 -7.2934 0.2392 21 7 4.7264 -7.5256 0.3680 22 14 2.2305 -8.7182 0.2128 23 1 0.8497 -8.1938 0.0583 24 1 2.5489 -9.6159 -0.9263 25 1 2.3327 -9.4774 1.4850 26 6 3.1915 -3.5302 -0.0017 27 7 2.1465 -1.1517 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 5.9109 2.0548 -1.1325 32 1 4.4113 2.2132 -2.1038 33 1 5.3701 4.4114 -2.3420 34 1 5.9832 4.4167 -0.6557 35 1 3.1854 4.9226 -1.6745 36 1 3.9808 5.5507 -0.2006 37 1 2.2451 3.2277 -0.4548 38 1 3.0107 3.8758 1.0234 39 1 5.2716 -0.0003 0.0091 40 1 4.5055 -2.5118 -2.0680 41 1 5.7418 -1.6443 -1.1264 42 1 6.5669 -3.8670 -1.8740 43 1 6.4652 -3.7771 -0.0985 44 1 5.5167 -5.9109 -0.8939 45 1 4.3928 -5.0304 -1.9586 46 1 5.0492 -8.4367 0.4497 47 1 2.6352 -3.5341 -0.9390 48 1 2.4981 -3.4172 0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:28 Heat of formation + Delta-G solvation = 47.125358 kcal Electronic energy + Delta-G solvation = -26958.085248 eV Core-core repulsion = 23433.220450 eV Total energy + Delta-G solvation = -3524.864798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47464 -40.44295 -39.36551 -36.15334 -34.86645 -34.23387 -32.09076 -31.97880 -31.20644 -30.17736 -29.07327 -26.98803 -25.93302 -24.30401 -23.56593 -22.74683 -22.01265 -21.59559 -20.56765 -18.95295 -18.59723 -18.07734 -17.17575 -16.78062 -16.43421 -16.36444 -16.27970 -15.49359 -15.27553 -15.09957 -14.82319 -14.71340 -14.41228 -14.28995 -14.15619 -13.65553 -13.59505 -13.31841 -13.21250 -13.10146 -12.88640 -12.75229 -12.55261 -12.30274 -12.16237 -11.96893 -11.92030 -11.83393 -11.79803 -11.46946 -11.39061 -11.08694 -10.96300 -10.69070 -10.41273 -10.27501 -9.75640 -9.30127 -8.10858 -6.24220 -0.03415 0.09093 1.39609 1.41553 1.53195 2.21539 2.42626 2.59695 2.70986 3.05241 3.16669 3.37402 3.63893 3.79982 3.92122 4.01660 4.08377 4.12873 4.21547 4.29833 4.33927 4.44019 4.50196 4.50574 4.55425 4.63614 4.69336 4.71650 4.77802 4.80934 4.88751 4.91740 4.95135 4.97987 5.03910 5.07448 5.13425 5.19629 5.25238 5.28170 5.42604 5.49768 5.61391 5.66950 5.90544 5.97128 6.10171 6.12247 6.25585 6.38642 6.85406 7.20220 7.43416 8.94450 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.023234 B = 0.003105 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.848717 B = 9016.118655 C =10014.349737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.350 3.650 3 N -0.582 5.582 4 C 0.359 3.641 5 N -0.466 5.466 6 C 0.041 3.959 7 C -0.116 4.116 8 C -0.127 4.127 9 C 0.032 3.968 10 C -0.266 4.266 11 C 0.363 3.637 12 N -0.480 5.480 13 C 0.073 3.927 14 C -0.110 4.110 15 C -0.107 4.107 16 C 0.051 3.949 17 H -0.002 1.002 18 C -0.535 4.535 19 H 0.048 0.952 20 C 0.017 3.983 21 N -0.913 5.913 22 Si 0.954 3.046 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.280 1.280 26 C 0.103 3.897 27 N -0.596 5.596 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.040 0.960 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.262 0.738 47 H 0.028 0.972 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 24.033 -5.789 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.080 3.920 3 N -0.306 5.306 4 C 0.120 3.880 5 N -0.184 5.184 6 C -0.084 4.084 7 C -0.153 4.153 8 C -0.165 4.165 9 C -0.094 4.094 10 C -0.294 4.294 11 C 0.125 3.875 12 N -0.196 5.196 13 C -0.052 4.052 14 C -0.148 4.148 15 C -0.145 4.145 16 C 0.032 3.968 17 H 0.016 0.984 18 C -0.574 4.574 19 H 0.067 0.933 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.780 3.220 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.206 1.206 26 C -0.023 4.023 27 N -0.320 5.320 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.176 0.824 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.008 23.832 -4.903 24.331 hybrid contribution -0.543 -1.450 -0.563 1.648 sum -0.535 22.382 -5.465 23.046 Atomic orbital electron populations 1.20636 0.83625 1.04707 1.04672 1.23517 0.99026 0.82092 0.87366 1.68199 1.08885 1.30360 1.23182 1.20166 0.88179 0.91544 0.88095 1.61835 1.20501 0.99400 1.36690 1.23471 0.97687 0.99611 0.87656 1.22538 0.97952 0.91540 1.03318 1.22456 0.96542 0.97565 0.99904 1.22965 0.95192 0.89304 1.01977 1.21695 1.02648 0.90289 1.14774 1.20269 0.88318 0.91118 0.87820 1.58902 1.18816 1.00349 1.41556 1.22290 0.93893 1.00504 0.88494 1.21643 0.97663 0.93102 1.02347 1.21510 0.97554 0.98264 0.97184 1.18672 0.93676 0.90126 0.94348 0.98368 1.21438 0.93380 0.92089 1.50456 0.93338 1.25675 0.96790 1.01111 0.94612 1.70018 1.13945 1.20818 1.50430 0.85563 0.79448 0.79275 0.77724 1.19419 1.20276 1.20587 1.21809 0.92362 0.88728 0.99402 1.68347 1.09368 1.31693 1.22601 0.88648 0.88019 0.89692 0.88103 0.93259 0.88408 0.89573 0.90277 0.89287 0.91128 0.90453 0.82401 0.94181 0.87695 0.89334 0.92226 0.91556 0.95407 0.92906 0.95333 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.31 71.24 0.73 -1.05 16 2 C 0.35 11.00 7.64 138.78 1.06 12.06 16 3 N -0.58 -17.29 8.19 -185.65 -1.52 -18.81 16 4 C 0.36 10.21 6.20 132.97 0.82 11.04 16 5 N -0.47 -10.46 5.30 -688.94 -3.65 -14.11 16 6 C 0.04 0.67 6.09 86.65 0.53 1.19 16 7 C -0.12 -1.25 7.06 31.80 0.22 -1.03 16 8 C -0.13 -1.50 6.93 31.48 0.22 -1.29 16 9 C 0.03 0.61 6.37 86.46 0.55 1.16 16 10 C -0.27 -8.11 8.68 22.71 0.20 -7.91 16 11 C 0.36 13.24 6.40 132.95 0.85 14.09 16 12 N -0.48 -18.86 4.68 -701.64 -3.28 -22.14 16 13 C 0.07 2.41 5.25 86.32 0.45 2.87 16 14 C -0.11 -3.98 6.09 30.65 0.19 -3.79 16 15 C -0.11 -5.04 5.03 30.67 0.15 -4.88 16 16 C 0.05 2.64 2.26 -11.49 -0.03 2.62 16 17 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 18 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 19 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 20 C 0.02 0.96 5.30 84.66 0.45 1.41 16 21 N -0.91 -52.84 11.36 21.45 0.24 -52.60 16 22 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 C 0.10 4.77 3.89 86.32 0.34 5.11 16 27 N -0.60 -22.24 8.74 -185.65 -1.62 -23.86 16 28 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 0.88 8.00 -2.38 -0.02 0.86 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.54 6.53 -2.39 -0.02 1.53 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.16 4.18 7.23 -2.92 -0.02 4.15 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 2.74 6.75 -2.39 -0.02 2.72 16 42 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.07 3.51 6.16 -2.39 -0.01 3.50 16 45 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 48 H 0.05 2.62 7.72 -2.39 -0.02 2.60 16 Total: -1.00 -67.16 371.76 0.09 -67.08 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.93 Total: 16.74 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 6.96 Total: 1.41 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -9.83 Total: -131.52 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -67.16 0.09 -67.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.202 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds