Wall clock time and date at job start Tue Mar 31 2020 11:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46888 * 299.99963 * 3 2 1 6 6 H 1.48496 * 109.47256 * 59.99692 * 3 2 1 7 7 C 1.37883 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00084 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.53517 * 299.89912 * 9 7 2 11 11 C 1.53121 * 109.50162 * 179.80253 * 9 7 2 12 12 C 1.53120 * 109.15923 * 182.40393 * 11 9 7 13 13 C 1.53039 * 109.27926 * 57.65496 * 12 11 9 14 14 N 1.46853 * 109.52098 * 300.81664 * 13 12 11 15 15 C 1.39361 * 110.99639 * 185.84239 * 14 13 12 16 16 C 1.39575 * 120.07719 * 55.81499 * 15 14 13 17 17 C 1.38355 * 117.96583 * 179.72308 * 16 15 14 18 18 C 1.39595 * 117.96020 * 0.48578 * 17 16 15 19 19 N 1.39355 * 120.07503 * 179.78119 * 18 17 16 20 20 C 1.46842 * 111.00188 * 179.72346 * 19 18 17 21 21 C 1.53039 * 109.52666 * 185.84227 * 20 19 18 22 22 C 1.53123 * 109.27546 * 300.81951 * 21 20 19 23 23 C 1.53120 * 109.21163 * 57.62218 * 22 21 20 24 24 C 1.46848 * 110.99951 * 303.93282 * 19 18 17 25 25 N 1.32276 * 119.84740 * 359.50204 * 18 17 16 26 26 N 1.28338 * 122.18822 * 0.25597 * 25 18 17 27 27 C 1.46848 * 111.19479 * 61.74601 * 14 13 12 28 28 H 0.96996 * 119.99696 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.52179 * 302.30578 * 11 9 7 30 30 H 1.08995 * 109.52609 * 62.49784 * 11 9 7 31 31 H 1.09006 * 109.50236 * 177.58986 * 12 11 9 32 32 H 1.09000 * 109.50595 * 297.66874 * 12 11 9 33 33 H 1.09001 * 109.46388 * 180.80654 * 13 12 11 34 34 H 1.08998 * 109.46628 * 60.83480 * 13 12 11 35 35 H 1.07996 * 121.01961 * 359.95448 * 16 15 14 36 36 H 1.07999 * 121.02770 * 180.24235 * 17 16 15 37 37 H 1.09001 * 109.46203 * 65.82110 * 20 19 18 38 38 H 1.09006 * 109.45199 * 305.85071 * 20 19 18 39 39 H 1.08999 * 109.50420 * 180.88146 * 21 20 19 40 40 H 1.09001 * 109.50541 * 60.75500 * 21 20 19 41 41 H 1.09002 * 109.52319 * 177.56011 * 22 21 20 42 42 H 1.08995 * 109.52318 * 297.68693 * 22 21 20 43 43 H 1.09000 * 109.50719 * 62.32149 * 23 22 21 44 44 H 1.09003 * 109.50116 * 182.43702 * 23 22 21 45 45 H 1.08999 * 109.46555 * 294.17600 * 24 19 18 46 46 H 1.08998 * 109.46337 * 54.15808 * 24 19 18 47 47 H 1.08997 * 109.46102 * 58.27103 * 27 14 13 48 48 H 1.08997 * 109.46081 * 178.25415 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6250 -2.5585 0.8908 11 6 2.2453 -3.6636 -0.0038 12 6 1.4726 -4.9841 -0.0644 13 6 0.5865 -4.9941 -1.3122 14 7 -0.3472 -3.8619 -1.2601 15 6 -1.2564 -3.9154 -2.3150 16 6 -2.0436 -5.0526 -2.5029 17 6 -2.9357 -5.0566 -3.5604 18 6 -2.9852 -3.9271 -4.3792 19 7 -3.8645 -3.8857 -5.4596 20 6 -3.7565 -2.6093 -6.1774 21 6 -4.8328 -2.5404 -7.2632 22 6 -4.6475 -3.7103 -8.2336 23 6 -4.7151 -5.0267 -7.4544 24 6 -3.6431 -5.0228 -6.3621 25 7 -2.1996 -2.8939 -4.1239 26 7 -1.3756 -2.8883 -3.1400 27 6 0.3713 -2.5812 -1.2490 28 1 -0.4849 0.8400 -0.0004 29 1 2.8972 -3.5827 -0.8737 30 1 2.8450 -3.6339 0.9059 31 1 2.1759 -5.8155 -0.1110 32 1 0.8506 -5.0830 0.8252 33 1 0.0241 -5.9271 -1.3507 34 1 1.2107 -4.9095 -2.2017 35 1 -1.9615 -5.9019 -1.8409 36 1 -3.5716 -5.9089 -3.7491 37 1 -2.7712 -2.5335 -6.6374 38 1 -3.8944 -1.7858 -5.4766 39 1 -4.7424 -1.5995 -7.8061 40 1 -5.8188 -2.6023 -6.8027 41 1 -5.4381 -3.6900 -8.9837 42 1 -3.6778 -3.6267 -8.7240 43 1 -5.6991 -5.1288 -6.9970 44 1 -4.5406 -5.8610 -8.1338 45 1 -2.6583 -4.9357 -6.8212 46 1 -3.6988 -5.9523 -5.7955 47 1 0.9966 -2.5080 -2.1388 48 1 -0.3473 -1.7617 -1.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:07 Heat of formation + Delta-G solvation = 66.856156 kcal Electronic energy + Delta-G solvation = -26959.347058 eV Core-core repulsion = 23435.337852 eV Total energy + Delta-G solvation = -3524.009206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07450 -39.22690 -37.89005 -34.51750 -33.70846 -32.62002 -32.05562 -31.05339 -29.65432 -28.94033 -25.47963 -25.00496 -24.61500 -23.26980 -22.72082 -21.70355 -21.25983 -19.97138 -18.83796 -17.67384 -17.03249 -16.85452 -15.87534 -15.31502 -15.01382 -14.73473 -14.46953 -14.32157 -14.20402 -13.98776 -13.79049 -13.47256 -13.20248 -13.15150 -12.90675 -12.65799 -12.37220 -12.23237 -11.91716 -11.45724 -11.16368 -11.09707 -10.92460 -10.80320 -10.66869 -10.63324 -10.50787 -10.40415 -10.25010 -10.10837 -10.05787 -9.60607 -9.20877 -8.94948 -8.86759 -8.70696 -8.29317 -7.44761 -5.95141 -4.02542 1.13881 1.33872 3.33998 3.36350 3.42499 3.45354 3.87256 4.13430 4.47653 4.49857 4.61372 4.64041 4.71648 4.86823 4.97625 5.05345 5.13306 5.18977 5.30690 5.37557 5.39371 5.42065 5.47465 5.50422 5.61010 5.64158 5.71535 5.74500 5.77258 5.89555 5.93839 5.98335 6.04233 6.15269 6.19135 6.28982 6.37557 6.62388 6.71182 6.79683 6.88382 6.97109 7.06196 7.11528 7.49785 7.71716 7.83310 8.02476 8.16308 8.47208 9.01190 9.24840 9.63004 11.10605 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003447 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.500076 B = 8121.718798 C = 9553.187903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.064 3.936 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.064 3.936 14 N -0.468 5.468 15 C 0.251 3.749 16 C -0.121 4.121 17 C -0.114 4.114 18 C 0.207 3.793 19 N -0.466 5.466 20 C 0.062 3.938 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.116 4.116 24 C 0.057 3.943 25 N -0.257 5.257 26 N -0.248 5.248 27 C 0.068 3.932 28 H 0.261 0.739 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.148 0.852 36 H 0.144 0.856 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.080 0.920 47 H 0.025 0.975 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.652 -13.714 -12.856 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.062 4.062 14 N -0.186 5.186 15 C 0.010 3.990 16 C -0.153 4.153 17 C -0.145 4.145 18 C -0.034 4.034 19 N -0.186 5.186 20 C -0.065 4.065 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.154 4.154 24 C -0.069 4.069 25 N -0.103 5.103 26 N -0.095 5.095 27 C -0.056 4.056 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.043 0.957 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.995 -12.121 -12.638 19.687 hybrid contribution 0.891 -0.362 -0.397 1.040 sum -8.104 -12.483 -13.035 19.784 Atomic orbital electron populations 1.69866 1.05807 1.26521 1.49773 1.25007 0.94847 0.99157 0.94811 0.86557 0.80065 0.83926 0.77589 1.19842 1.20964 1.21045 1.21128 0.92891 0.90251 1.51405 0.92441 1.18760 0.92132 0.91998 0.93899 0.94759 1.21737 0.98658 0.94429 1.00458 1.21640 0.97796 0.98838 0.97090 1.22165 0.93356 0.91945 0.98714 1.59405 1.17924 1.07932 1.33337 1.21714 0.96133 0.91102 0.90064 1.21896 0.95918 0.99304 0.98212 1.21715 0.99052 0.98751 0.94999 1.21312 0.93325 0.93052 0.95666 1.59259 1.45701 1.05161 1.08526 1.22026 0.98159 0.90449 0.95832 1.21660 0.99605 0.98370 0.96099 1.21617 1.01894 0.94791 0.97854 1.21605 0.99471 0.97816 0.96494 1.22255 0.98244 0.92833 0.93618 1.72994 1.01784 1.23300 1.12189 1.73204 1.12941 1.24056 0.99263 1.22613 0.97887 0.86614 0.98518 0.92873 0.93459 0.92853 0.92395 0.91418 0.91493 0.94399 0.83476 0.83825 0.93295 0.89265 0.91032 0.91064 0.91645 0.92099 0.90808 0.91097 0.93878 0.90112 0.95674 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.83 11.33 55.43 0.63 -25.21 16 2 C 0.06 1.80 5.30 -17.81 -0.09 1.71 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.30 8.56 -34.44 -0.29 -14.60 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.28 2.26 -91.69 -0.21 1.07 16 10 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 11 C -0.12 -2.35 5.23 -26.61 -0.14 -2.49 16 12 C -0.12 -1.92 6.09 -26.65 -0.16 -2.09 16 13 C 0.06 1.08 5.26 -3.83 -0.02 1.06 16 14 N -0.47 -9.64 4.69 -173.00 -0.81 -10.45 16 15 C 0.25 4.90 6.48 -154.60 -1.00 3.90 16 16 C -0.12 -1.82 9.28 -39.04 -0.36 -2.18 16 17 C -0.11 -1.55 9.29 -39.03 -0.36 -1.91 16 18 C 0.21 3.25 6.48 -154.61 -1.00 2.25 16 19 N -0.47 -5.99 4.69 -173.00 -0.81 -6.80 16 20 C 0.06 0.79 4.67 -3.84 -0.02 0.77 16 21 C -0.12 -1.12 6.10 -26.65 -0.16 -1.28 16 22 C -0.12 -0.98 6.00 -26.61 -0.16 -1.14 16 23 C -0.12 -0.89 6.10 -26.64 -0.16 -1.05 16 24 C 0.06 0.56 5.26 -3.83 -0.02 0.54 16 25 N -0.26 -5.00 9.87 31.28 0.31 -4.70 16 26 N -0.25 -5.42 9.87 31.28 0.31 -5.11 16 27 C 0.07 1.69 3.72 -3.83 -0.01 1.67 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.91 6.73 -51.93 -0.35 0.56 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.15 1.76 7.21 -52.49 -0.38 1.39 16 36 H 0.14 1.42 7.23 -52.49 -0.38 1.04 16 37 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.09 1.30 7.72 -51.93 -0.40 0.90 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.08 0.68 6.74 -51.93 -0.35 0.33 16 47 H 0.02 0.65 8.12 -51.93 -0.42 0.22 16 48 H 0.12 3.46 5.68 -51.93 -0.29 3.16 16 LS Contribution 366.84 15.07 5.53 5.53 Total: -1.00 -31.17 366.84 -12.09 -43.26 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.03 Total: 0.59 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -4.18 Total: -13.76 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.38 Total: -52.27 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.17 -12.09 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.115 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds