Wall clock time and date at job start Tue Mar 31 2020 11:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00291 * 2 1 4 4 H 1.48495 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46888 * 299.99963 * 3 2 1 6 6 H 1.48496 * 109.47256 * 59.99692 * 3 2 1 7 7 C 1.37883 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99601 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00084 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.53517 * 299.89912 * 9 7 2 11 11 C 1.53121 * 109.50162 * 179.80253 * 9 7 2 12 12 C 1.53120 * 109.15923 * 182.40393 * 11 9 7 13 13 C 1.53039 * 109.27926 * 57.65496 * 12 11 9 14 14 N 1.46853 * 109.52098 * 300.81664 * 13 12 11 15 15 C 1.39361 * 110.99639 * 185.84239 * 14 13 12 16 16 C 1.39575 * 120.07719 * 55.81499 * 15 14 13 17 17 C 1.38355 * 117.96583 * 179.72308 * 16 15 14 18 18 C 1.39595 * 117.96020 * 0.48578 * 17 16 15 19 19 N 1.39355 * 120.07503 * 179.78119 * 18 17 16 20 20 C 1.46842 * 111.00188 * 179.72346 * 19 18 17 21 21 C 1.53039 * 109.52666 * 185.84227 * 20 19 18 22 22 C 1.53123 * 109.27546 * 300.81951 * 21 20 19 23 23 C 1.53120 * 109.21163 * 57.62218 * 22 21 20 24 24 C 1.46848 * 110.99951 * 303.93282 * 19 18 17 25 25 N 1.32276 * 119.84740 * 359.50204 * 18 17 16 26 26 N 1.28338 * 122.18822 * 0.25597 * 25 18 17 27 27 C 1.46848 * 111.19479 * 61.74601 * 14 13 12 28 28 H 0.96996 * 119.99696 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.52179 * 302.30578 * 11 9 7 30 30 H 1.08995 * 109.52609 * 62.49784 * 11 9 7 31 31 H 1.09006 * 109.50236 * 177.58986 * 12 11 9 32 32 H 1.09000 * 109.50595 * 297.66874 * 12 11 9 33 33 H 1.09001 * 109.46388 * 180.80654 * 13 12 11 34 34 H 1.08998 * 109.46628 * 60.83480 * 13 12 11 35 35 H 1.07996 * 121.01961 * 359.95448 * 16 15 14 36 36 H 1.07999 * 121.02770 * 180.24235 * 17 16 15 37 37 H 1.09001 * 109.46203 * 65.82110 * 20 19 18 38 38 H 1.09006 * 109.45199 * 305.85071 * 20 19 18 39 39 H 1.08999 * 109.50420 * 180.88146 * 21 20 19 40 40 H 1.09001 * 109.50541 * 60.75500 * 21 20 19 41 41 H 1.09002 * 109.52319 * 177.56011 * 22 21 20 42 42 H 1.08995 * 109.52318 * 297.68693 * 22 21 20 43 43 H 1.09000 * 109.50719 * 62.32149 * 23 22 21 44 44 H 1.09003 * 109.50116 * 182.43702 * 23 22 21 45 45 H 1.08999 * 109.46555 * 294.17600 * 24 19 18 46 46 H 1.08998 * 109.46337 * 54.15808 * 24 19 18 47 47 H 1.08997 * 109.46102 * 58.27103 * 27 14 13 48 48 H 1.08997 * 109.46081 * 178.25415 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6250 -2.5585 0.8908 11 6 2.2453 -3.6636 -0.0038 12 6 1.4726 -4.9841 -0.0644 13 6 0.5865 -4.9941 -1.3122 14 7 -0.3472 -3.8619 -1.2601 15 6 -1.2564 -3.9154 -2.3150 16 6 -2.0436 -5.0526 -2.5029 17 6 -2.9357 -5.0566 -3.5604 18 6 -2.9852 -3.9271 -4.3792 19 7 -3.8645 -3.8857 -5.4596 20 6 -3.7565 -2.6093 -6.1774 21 6 -4.8328 -2.5404 -7.2632 22 6 -4.6475 -3.7103 -8.2336 23 6 -4.7151 -5.0267 -7.4544 24 6 -3.6431 -5.0228 -6.3621 25 7 -2.1996 -2.8939 -4.1239 26 7 -1.3756 -2.8883 -3.1400 27 6 0.3713 -2.5812 -1.2490 28 1 -0.4849 0.8400 -0.0004 29 1 2.8972 -3.5827 -0.8737 30 1 2.8450 -3.6339 0.9059 31 1 2.1759 -5.8155 -0.1110 32 1 0.8506 -5.0830 0.8252 33 1 0.0241 -5.9271 -1.3507 34 1 1.2107 -4.9095 -2.2017 35 1 -1.9615 -5.9019 -1.8409 36 1 -3.5716 -5.9089 -3.7491 37 1 -2.7712 -2.5335 -6.6374 38 1 -3.8944 -1.7858 -5.4766 39 1 -4.7424 -1.5995 -7.8061 40 1 -5.8188 -2.6023 -6.8027 41 1 -5.4381 -3.6900 -8.9837 42 1 -3.6778 -3.6267 -8.7240 43 1 -5.6991 -5.1288 -6.9970 44 1 -4.5406 -5.8610 -8.1338 45 1 -2.6583 -4.9357 -6.8212 46 1 -3.6988 -5.9523 -5.7955 47 1 0.9966 -2.5080 -2.1388 48 1 -0.3473 -1.7617 -1.2415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:06 Heat of formation + Delta-G solvation = 47.783573 kcal Electronic energy + Delta-G solvation = -26960.174108 eV Core-core repulsion = 23435.337852 eV Total energy + Delta-G solvation = -3524.836256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35758 -40.41591 -39.24179 -35.94266 -35.05992 -34.28219 -33.32079 -31.91169 -31.43624 -30.25707 -27.23812 -26.21231 -26.05519 -24.43465 -23.88469 -23.04808 -22.73716 -20.77606 -20.52098 -18.89441 -18.60769 -18.21412 -17.69494 -16.53447 -16.48220 -16.00107 -15.79072 -15.50608 -15.37111 -15.05019 -14.95679 -14.77049 -14.47787 -14.43036 -14.20284 -14.09039 -13.92602 -13.57429 -13.16744 -12.92999 -12.64808 -12.39596 -12.27038 -12.21285 -12.13405 -12.01803 -11.79117 -11.63273 -11.49566 -11.42223 -11.30822 -11.21350 -10.91103 -10.82038 -10.50311 -10.35705 -9.95217 -8.88544 -8.10884 -6.26074 -0.07087 0.07432 1.37229 1.39363 1.50640 2.23826 2.40869 2.62576 2.73050 3.17525 3.41898 3.65656 3.75403 3.82709 3.93028 3.97258 4.03757 4.09478 4.13652 4.24245 4.32436 4.35871 4.43584 4.51916 4.58283 4.59819 4.68083 4.77400 4.81060 4.84493 4.89036 4.91075 4.98095 5.02105 5.06483 5.11739 5.20228 5.24636 5.26845 5.29244 5.34818 5.45233 5.58868 5.74787 5.87371 5.93225 5.98774 6.12853 6.24696 6.39728 6.86711 7.43119 7.91502 8.92997 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.003447 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.500076 B = 8121.718798 C = 9553.187903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.057 0.943 9 C 0.047 3.953 10 H 0.001 0.999 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.061 3.939 14 N -0.477 5.477 15 C 0.225 3.775 16 C -0.109 4.109 17 C -0.098 4.098 18 C 0.209 3.791 19 N -0.463 5.463 20 C 0.063 3.937 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.110 4.110 24 C 0.052 3.948 25 N -0.302 5.302 26 N -0.308 5.308 27 C 0.096 3.904 28 H 0.258 0.742 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.030 0.970 35 H 0.188 0.812 36 H 0.194 0.806 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.033 0.967 46 H 0.104 0.896 47 H -0.004 1.004 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -17.312 -13.974 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.075 0.925 9 C 0.028 3.972 10 H 0.019 0.981 11 C -0.149 4.149 12 C -0.145 4.145 13 C -0.064 4.064 14 N -0.195 5.195 15 C -0.018 4.018 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.034 4.034 19 N -0.183 5.183 20 C -0.064 4.064 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.074 4.074 25 N -0.146 5.146 26 N -0.153 5.153 27 C -0.031 4.031 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.049 0.951 35 H 0.205 0.795 36 H 0.212 0.788 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.052 0.948 46 H 0.122 0.878 47 H 0.015 0.985 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.962 -15.729 -13.779 23.163 hybrid contribution 1.080 0.710 -0.150 1.302 sum -8.882 -15.019 -13.930 22.327 Atomic orbital electron populations 1.70048 1.07305 1.26951 1.50814 1.25824 0.95607 1.02681 0.94620 0.85566 0.79284 0.79737 0.77471 1.18644 1.21225 1.20286 1.21557 0.93112 0.91888 1.50926 0.92518 1.18711 0.92717 0.93239 0.92511 0.98083 1.21630 0.97855 0.94939 1.00446 1.21617 0.98121 0.97620 0.97119 1.22385 0.93367 0.92273 0.98413 1.59418 1.18382 1.06963 1.34751 1.21979 0.96970 0.92637 0.90168 1.22243 0.94528 0.98483 0.98737 1.22213 0.98391 0.99012 0.93233 1.21856 0.92063 0.92895 0.96557 1.59413 1.44011 1.06187 1.08665 1.21973 0.98613 0.89842 0.95972 1.21640 0.98180 0.99873 0.95410 1.21636 1.02496 0.94128 0.97784 1.21628 0.98778 0.98377 0.96014 1.22491 0.98756 0.92155 0.93967 1.72872 1.03456 1.25796 1.12476 1.73044 1.15072 1.26164 1.00973 1.21908 0.96270 0.88160 0.96771 0.93260 0.93869 0.92415 0.88151 0.91261 0.86940 0.95112 0.79466 0.78847 0.95016 0.92376 0.90372 0.90778 0.89583 0.92455 0.90242 0.88597 0.94814 0.87808 0.98538 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.67 11.33 21.45 0.24 -56.43 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.95 46.14 29.54 68.60 2.03 48.17 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.54 -30.95 8.56 25.60 0.22 -30.73 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.05 2.48 2.26 -11.49 -0.03 2.46 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C -0.11 -4.55 5.23 30.67 0.16 -4.39 16 12 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 13 C 0.06 1.94 5.26 86.33 0.45 2.39 16 14 N -0.48 -19.98 4.69 -701.25 -3.29 -23.27 16 15 C 0.22 8.92 6.48 133.08 0.86 9.78 16 16 C -0.11 -2.99 9.28 22.62 0.21 -2.78 16 17 C -0.10 -2.35 9.29 22.63 0.21 -2.14 16 18 C 0.21 6.45 6.48 133.09 0.86 7.31 16 19 N -0.46 -11.36 4.69 -701.24 -3.29 -14.66 16 20 C 0.06 1.66 4.67 86.33 0.40 2.06 16 21 C -0.11 -2.02 6.10 30.65 0.19 -1.83 16 22 C -0.12 -1.63 6.00 30.68 0.18 -1.44 16 23 C -0.11 -1.29 6.10 30.65 0.19 -1.10 16 24 C 0.05 0.87 5.26 86.33 0.45 1.32 16 25 N -0.30 -12.41 9.87 -54.94 -0.54 -12.95 16 26 N -0.31 -14.32 9.87 -54.95 -0.54 -14.86 16 27 C 0.10 5.03 3.72 86.33 0.32 5.35 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.11 2.55 6.73 -2.39 -0.02 2.54 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.19 3.52 7.21 -2.91 -0.02 3.50 16 36 H 0.19 2.66 7.23 -2.91 -0.02 2.64 16 37 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 38 H 0.06 1.85 7.72 -2.38 -0.02 1.83 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 46 H 0.10 1.26 6.74 -2.39 -0.02 1.25 16 47 H 0.00 -0.21 8.12 -2.39 -0.02 -0.23 16 48 H 0.08 4.71 5.68 -2.39 -0.01 4.70 16 Total: -1.00 -76.69 366.84 0.86 -75.84 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.93 Total: 13.91 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.32 Total: -15.75 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -7.42 Total: -122.17 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -76.69 0.86 -75.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.623 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds