Wall clock time and date at job start Tue Mar 31 2020 10:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.39314 * 111.00359 * 174.15890 * 14 13 12 16 16 C 1.39079 * 119.62556 * 304.21444 * 15 14 13 17 17 C 1.38289 * 119.17306 * 179.97438 * 16 15 14 18 18 C 1.39408 * 118.44033 * 0.02562 * 17 16 15 19 19 N 1.40051 * 120.40396 * 179.97438 * 18 17 16 20 20 C 1.46956 * 111.00233 * 56.19607 * 19 18 17 21 21 C 1.53044 * 109.36641 * 183.18993 * 20 19 18 22 22 N 1.46964 * 109.36390 * 301.59399 * 21 20 19 23 23 C 1.46963 * 110.87504 * 59.32405 * 22 21 20 24 24 C 1.46955 * 110.99966 * 179.97438 * 19 18 17 25 25 C 1.38635 * 119.19053 * 359.97438 * 18 17 16 26 26 N 1.31996 * 120.74901 * 359.75041 * 25 18 17 27 27 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 30 30 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 31 31 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 32 32 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 33 33 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 34 34 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 35 35 H 1.08004 * 120.41747 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.77388 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.48633 * 303.15833 * 20 19 18 38 38 H 1.09007 * 109.49115 * 63.21728 * 20 19 18 39 39 H 1.09000 * 109.48747 * 181.63616 * 21 20 19 40 40 H 1.08998 * 109.50729 * 61.57421 * 21 20 19 41 41 H 1.00897 * 111.00131 * 295.45619 * 22 21 20 42 42 H 1.08997 * 109.48982 * 180.71406 * 23 22 21 43 43 H 1.08997 * 109.51148 * 60.65549 * 23 22 21 44 44 H 1.09006 * 109.48972 * 296.77594 * 24 19 18 45 45 H 1.09003 * 109.49213 * 56.82020 * 24 19 18 46 46 H 1.08000 * 119.62583 * 180.02562 * 25 18 17 47 47 H 1.09002 * 109.45689 * 301.72551 * 27 14 13 48 48 H 1.08994 * 109.46554 * 181.75633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3812 -6.0145 0.1314 16 6 1.8738 -7.3094 0.1395 17 6 2.7456 -8.3742 0.2751 18 6 4.1078 -8.1053 0.3996 19 7 5.0272 -9.1525 0.5396 20 6 4.9159 -10.1036 -0.5751 21 6 5.8787 -11.2707 -0.3444 22 7 7.2504 -10.7556 -0.2304 23 6 7.3616 -9.8045 0.8844 24 6 6.3988 -8.6374 0.6532 25 6 4.5413 -6.7885 0.3831 26 7 3.6813 -5.7966 0.2465 27 6 2.2451 -3.6628 0.0105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3638 -1.7867 -1.2326 30 1 0.9979 -2.4956 -2.1357 31 1 -0.9342 -4.0295 -2.1737 32 1 -0.9948 -4.0193 -0.3941 33 1 1.3431 -4.9950 -2.0977 34 1 0.1921 -6.0293 -1.2185 35 1 0.8120 -7.4812 0.0412 36 1 2.3797 -9.3903 0.2842 37 1 3.8946 -10.4803 -0.6311 38 1 5.1703 -9.6013 -1.5085 39 1 5.8189 -11.9628 -1.1843 40 1 5.6076 -11.7899 0.5748 41 1 7.5517 -10.3346 -1.0964 42 1 8.3828 -9.4277 0.9405 43 1 7.1074 -10.3065 1.8180 44 1 6.6699 -8.1187 -0.2664 45 1 6.4588 -7.9447 1.4927 46 1 5.5951 -6.5721 0.4786 47 1 2.8821 -3.6002 -0.8717 48 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:56 Heat of formation + Delta-G solvation = 59.885032 kcal Electronic energy + Delta-G solvation = -26627.168567 eV Core-core repulsion = 23102.857070 eV Total energy + Delta-G solvation = -3524.311497 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93077 -39.44867 -37.66000 -35.01610 -33.50255 -32.40150 -31.70291 -31.27920 -29.92147 -28.49260 -25.67812 -25.24551 -24.59408 -23.40515 -22.69300 -21.45610 -21.27909 -20.57972 -18.71329 -17.86726 -17.06400 -16.43509 -15.97765 -15.57883 -15.26470 -15.16538 -14.81101 -14.59801 -14.40344 -14.18894 -13.83800 -13.74213 -13.37667 -13.02429 -12.70079 -12.61610 -12.54486 -12.34947 -12.13249 -11.80201 -11.72535 -11.70022 -11.37051 -10.92694 -10.79306 -10.69496 -10.45388 -10.18105 -9.89932 -9.67241 -9.49468 -9.30420 -9.11670 -8.92536 -8.70884 -8.63248 -8.27958 -7.35439 -5.97293 -4.02822 1.24685 1.40100 3.31499 3.33769 3.37925 3.41059 3.81467 3.85832 4.13829 4.45810 4.54030 4.57758 4.69316 4.69672 4.78499 4.85421 4.90589 5.11122 5.20622 5.23646 5.29431 5.33190 5.36181 5.49822 5.56560 5.63988 5.67337 5.72096 5.83411 5.92275 5.95649 6.15002 6.33263 6.42773 6.47686 6.54357 6.59192 6.67680 6.72850 6.89422 6.95620 6.97104 7.08929 7.29341 7.43868 7.75135 7.76929 8.05347 8.12409 8.28955 8.48447 9.00580 9.61339 11.09169 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.002763 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.972641 B =10130.597201 C =11098.012706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.113 4.113 12 C -0.119 4.119 13 C 0.068 3.932 14 N -0.475 5.475 15 C 0.307 3.693 16 C -0.170 4.170 17 C -0.071 4.071 18 C 0.008 3.992 19 N -0.475 5.475 20 C 0.017 3.983 21 C 0.059 3.941 22 N -0.687 5.687 23 C 0.059 3.941 24 C 0.009 3.991 25 C 0.085 3.915 26 N -0.495 5.495 27 C 0.080 3.920 28 H 0.260 0.740 29 H 0.094 0.906 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.339 0.661 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.151 0.849 47 H 0.035 0.965 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -21.700 -2.394 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.151 4.151 12 C -0.157 4.157 13 C -0.057 4.057 14 N -0.191 5.191 15 C 0.073 3.927 16 C -0.194 4.194 17 C -0.099 4.099 18 C -0.092 4.092 19 N -0.193 5.193 20 C -0.110 4.110 21 C -0.071 4.071 22 N -0.315 5.315 23 C -0.071 4.071 24 C -0.120 4.120 25 C -0.076 4.076 26 N -0.209 5.209 27 C -0.045 4.045 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.104 0.896 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.157 0.843 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.168 0.832 47 H 0.053 0.947 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.428 -21.495 -1.231 23.121 hybrid contribution 0.269 1.326 -1.441 1.977 sum 8.697 -20.169 -2.672 22.126 Atomic orbital electron populations 1.69872 1.05838 1.26471 1.50702 1.24924 0.94841 0.98954 0.95100 0.86668 0.79600 0.83168 0.78611 1.20351 1.21328 1.20272 1.21071 0.92909 0.90425 1.50692 0.92709 1.18757 0.92667 0.90604 0.94785 0.94805 1.21703 1.00156 0.94564 0.98706 1.21733 0.96948 0.96208 1.00802 1.22202 0.95367 0.99775 0.88405 1.59304 1.21494 1.02596 1.35742 1.20152 0.87891 0.90864 0.93747 1.21493 1.00899 0.91490 1.05497 1.20978 0.91061 0.99299 0.98553 1.19735 0.92846 0.91307 1.05267 1.59446 1.04219 1.14293 1.41300 1.23017 1.02308 0.94473 0.91246 1.22152 0.86251 0.95492 1.03252 1.60727 1.22950 1.39595 1.08237 1.22148 0.98315 0.90997 0.95605 1.23042 0.88133 0.98808 1.02026 1.22733 0.99235 0.87327 0.98319 1.67679 1.02517 1.35592 1.15126 1.22254 0.95891 0.85606 1.00787 0.92992 0.88798 0.94876 0.92757 0.91725 0.94563 0.91525 0.84573 0.85007 0.89626 0.94176 0.89895 0.89766 0.84320 0.89730 0.89749 0.93716 0.89174 0.83209 0.94704 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 11.37 55.43 0.63 -24.76 16 2 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.29 2.26 -91.69 -0.21 1.08 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.65 5.03 -26.61 -0.13 -2.79 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.07 1.19 5.25 -3.84 -0.02 1.17 16 14 N -0.48 -9.29 4.69 -173.17 -0.81 -10.10 16 15 C 0.31 5.43 6.41 -154.80 -0.99 4.44 16 16 C -0.17 -2.44 9.18 -39.25 -0.36 -2.80 16 17 C -0.07 -0.88 9.31 -39.13 -0.36 -1.24 16 18 C 0.01 0.10 5.65 -83.52 -0.47 -0.37 16 19 N -0.48 -4.81 4.77 -170.76 -0.81 -5.62 16 20 C 0.02 0.14 5.38 -3.77 -0.02 0.12 16 21 C 0.06 0.40 6.72 -3.77 -0.03 0.37 16 22 N -0.69 -4.87 6.91 -113.63 -0.79 -5.66 16 23 C 0.06 0.42 6.72 -3.76 -0.03 0.40 16 24 C 0.01 0.08 4.30 -3.77 -0.02 0.06 16 25 C 0.08 1.23 10.00 -17.33 -0.17 1.06 16 26 N -0.50 -8.91 8.68 -12.23 -0.11 -9.02 16 27 C 0.08 1.81 3.87 -3.83 -0.01 1.80 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.09 2.45 6.18 -51.93 -0.32 2.13 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.96 6.67 -51.93 -0.35 0.62 16 35 H 0.14 1.71 7.14 -52.48 -0.37 1.34 16 36 H 0.13 1.29 7.27 -52.49 -0.38 0.91 16 37 H 0.09 0.66 6.88 -51.93 -0.36 0.30 16 38 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.34 2.11 8.89 -39.29 -0.35 1.76 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.04 0.39 7.60 -51.93 -0.39 -0.01 16 45 H 0.09 0.79 7.19 -51.93 -0.37 0.42 16 46 H 0.15 1.87 5.82 -52.49 -0.31 1.56 16 47 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 48 H 0.07 1.68 7.71 -51.93 -0.40 1.28 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -30.11 364.25 -12.59 -42.70 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.79 Total: 2.51 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -3.38 Total: -11.99 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -1.89 Total: -55.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.11 -12.59 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.590 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds