Wall clock time and date at job start Tue Mar 31 2020 10:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99772 * 2 1
4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1
5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1
6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1
7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1
10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2
11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2
12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7
13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9
14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11
15 15 C 1.39314 * 111.00359 * 174.15890 * 14 13 12
16 16 C 1.39079 * 119.62556 * 304.21444 * 15 14 13
17 17 C 1.38289 * 119.17306 * 179.97438 * 16 15 14
18 18 C 1.39408 * 118.44033 * 0.02562 * 17 16 15
19 19 N 1.40051 * 120.40396 * 179.97438 * 18 17 16
20 20 C 1.46956 * 111.00233 * 56.19607 * 19 18 17
21 21 C 1.53044 * 109.36641 * 183.18993 * 20 19 18
22 22 N 1.46964 * 109.36390 * 301.59399 * 21 20 19
23 23 C 1.46963 * 110.87504 * 59.32405 * 22 21 20
24 24 C 1.46955 * 110.99966 * 179.97438 * 19 18 17
25 25 C 1.38635 * 119.19053 * 359.97438 * 18 17 16
26 26 N 1.31996 * 120.74901 * 359.75041 * 25 18 17
27 27 C 1.46851 * 111.19882 * 298.25989 * 14 13 12
28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3
29 29 H 1.08998 * 109.52290 * 297.49568 * 11 9 7
30 30 H 1.08998 * 109.52301 * 57.69067 * 11 9 7
31 31 H 1.09007 * 109.50682 * 182.40442 * 12 11 9
32 32 H 1.09005 * 109.50693 * 62.28859 * 12 11 9
33 33 H 1.09000 * 109.46377 * 299.16096 * 13 12 11
34 34 H 1.09003 * 109.46516 * 179.19594 * 13 12 11
35 35 H 1.08004 * 120.41747 * 359.97438 * 16 15 14
36 36 H 1.07996 * 120.77388 * 180.02562 * 17 16 15
37 37 H 1.09004 * 109.48633 * 303.15833 * 20 19 18
38 38 H 1.09007 * 109.49115 * 63.21728 * 20 19 18
39 39 H 1.09000 * 109.48747 * 181.63616 * 21 20 19
40 40 H 1.08998 * 109.50729 * 61.57421 * 21 20 19
41 41 H 1.00897 * 111.00131 * 295.45619 * 22 21 20
42 42 H 1.08997 * 109.48982 * 180.71406 * 23 22 21
43 43 H 1.08997 * 109.51148 * 60.65549 * 23 22 21
44 44 H 1.09006 * 109.48972 * 296.77594 * 24 19 18
45 45 H 1.09003 * 109.49213 * 56.82020 * 24 19 18
46 46 H 1.08000 * 119.62583 * 180.02562 * 25 18 17
47 47 H 1.09002 * 109.45689 * 301.72551 * 27 14 13
48 48 H 1.08994 * 109.46554 * 181.75633 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1027 1.6966 -1.2126
5 1 1.2840 2.7465 0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2511 -2.4991 0.0054
10 1 0.6233 -2.5529 0.8947
11 6 0.3742 -2.5887 -1.2466
12 6 -0.3413 -3.9423 -1.2632
13 6 0.6987 -5.0642 -1.2213
14 7 1.5114 -4.9348 -0.0051
15 6 2.3812 -6.0145 0.1314
16 6 1.8738 -7.3094 0.1395
17 6 2.7456 -8.3742 0.2751
18 6 4.1078 -8.1053 0.3996
19 7 5.0272 -9.1525 0.5396
20 6 4.9159 -10.1036 -0.5751
21 6 5.8787 -11.2707 -0.3444
22 7 7.2504 -10.7556 -0.2304
23 6 7.3616 -9.8045 0.8844
24 6 6.3988 -8.6374 0.6532
25 6 4.5413 -6.7885 0.3831
26 7 3.6813 -5.7966 0.2465
27 6 2.2451 -3.6628 0.0105
28 1 -0.4850 0.8400 0.0004
29 1 -0.3638 -1.7867 -1.2326
30 1 0.9979 -2.4956 -2.1357
31 1 -0.9342 -4.0295 -2.1737
32 1 -0.9948 -4.0193 -0.3941
33 1 1.3431 -4.9950 -2.0977
34 1 0.1921 -6.0293 -1.2185
35 1 0.8120 -7.4812 0.0412
36 1 2.3797 -9.3903 0.2842
37 1 3.8946 -10.4803 -0.6311
38 1 5.1703 -9.6013 -1.5085
39 1 5.8189 -11.9628 -1.1843
40 1 5.6076 -11.7899 0.5748
41 1 7.5517 -10.3346 -1.0964
42 1 8.3828 -9.4277 0.9405
43 1 7.1074 -10.3065 1.8180
44 1 6.6699 -8.1187 -0.2664
45 1 6.4588 -7.9447 1.4927
46 1 5.5951 -6.5721 0.4786
47 1 2.8821 -3.6002 -0.8717
48 1 2.8614 -3.6100 0.9079
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166740797.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:58:55
Heat of formation + Delta-G solvation = 39.268556 kcal
Electronic energy + Delta-G solvation = -26628.062565 eV
Core-core repulsion = 23102.857070 eV
Total energy + Delta-G solvation = -3525.205495 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 316.196 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.99550 -40.50834 -38.95482 -36.13583 -35.12270 -33.51219 -33.27790 -32.06087
-31.64556 -29.61730 -27.11802 -26.55287 -25.71739 -24.68737 -23.80163 -22.69818
-22.57765 -21.43954 -20.47713 -19.03722 -18.42924 -17.66812 -17.51258 -16.60864
-16.38144 -16.10303 -15.93183 -15.82118 -15.54496 -15.21214 -15.06584 -14.96680
-14.67294 -14.48654 -14.12437 -14.04786 -13.93245 -13.52590 -13.25817 -13.06750
-12.86739 -12.71162 -12.57116 -12.36366 -12.34295 -11.99915 -11.90677 -11.80834
-11.58869 -11.33885 -11.04517 -10.86029 -10.71101 -10.40622 -10.35955 -9.87377
-9.43089 -8.53689 -8.11083 -6.24895 0.13269 0.32758 1.39375 1.41078
1.48838 2.37522 2.44063 2.73379 2.89736 3.15791 3.30262 3.50077
3.78713 3.90512 3.95973 3.99279 4.04419 4.15089 4.16544 4.17976
4.23080 4.36142 4.39557 4.52290 4.57956 4.59055 4.65171 4.71837
4.73709 4.80627 4.85046 4.93867 4.98711 5.01424 5.02907 5.11361
5.12718 5.30238 5.32899 5.48874 5.60306 5.74686 5.83706 5.98031
5.99818 5.99987 6.12060 6.33844 6.37611 6.40397 6.84387 7.11267
7.42482 8.93866
Molecular weight = 316.20amu
Principal moments of inertia in cm(-1)
A = 0.022778 B = 0.002763 C = 0.002522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1228.972641 B =10130.597201 C =11098.012706
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.017 3.983
3 Si 0.954 3.046
4 H -0.272 1.272
5 H -0.279 1.279
6 H -0.274 1.274
7 C -0.539 4.539
8 H 0.046 0.954
9 C 0.051 3.949
10 H -0.002 1.002
11 C -0.106 4.106
12 C -0.110 4.110
13 C 0.071 3.929
14 N -0.486 5.486
15 C 0.271 3.729
16 C -0.161 4.161
17 C -0.067 4.067
18 C 0.026 3.974
19 N -0.478 5.478
20 C 0.018 3.982
21 C 0.063 3.937
22 N -0.691 5.691
23 C 0.066 3.934
24 C 0.008 3.992
25 C 0.065 3.935
26 N -0.533 5.533
27 C 0.106 3.894
28 H 0.262 0.738
29 H 0.064 0.936
30 H 0.023 0.977
31 H 0.084 0.916
32 H 0.059 0.941
33 H 0.031 0.969
34 H 0.106 0.894
35 H 0.158 0.842
36 H 0.167 0.833
37 H 0.096 0.904
38 H 0.036 0.964
39 H 0.101 0.899
40 H 0.080 0.920
41 H 0.345 0.655
42 H 0.098 0.902
43 H 0.079 0.921
44 H 0.045 0.955
45 H 0.084 0.916
46 H 0.161 0.839
47 H 0.018 0.982
48 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.991 -24.443 -3.085 26.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.182 4.182
3 Si 0.780 3.220
4 H -0.197 1.197
5 H -0.204 1.204
6 H -0.199 1.199
7 C -0.578 4.578
8 H 0.064 0.936
9 C 0.032 3.968
10 H 0.016 0.984
11 C -0.144 4.144
12 C -0.148 4.148
13 C -0.054 4.054
14 N -0.203 5.203
15 C 0.038 3.962
16 C -0.184 4.184
17 C -0.095 4.095
18 C -0.074 4.074
19 N -0.195 5.195
20 C -0.109 4.109
21 C -0.067 4.067
22 N -0.320 5.320
23 C -0.064 4.064
24 C -0.121 4.121
25 C -0.095 4.095
26 N -0.247 5.247
27 C -0.021 4.021
28 H 0.071 0.929
29 H 0.083 0.917
30 H 0.042 0.958
31 H 0.103 0.897
32 H 0.078 0.922
33 H 0.050 0.950
34 H 0.125 0.875
35 H 0.176 0.824
36 H 0.184 0.816
37 H 0.114 0.886
38 H 0.055 0.945
39 H 0.119 0.881
40 H 0.099 0.901
41 H 0.163 0.837
42 H 0.117 0.883
43 H 0.097 0.903
44 H 0.063 0.937
45 H 0.103 0.897
46 H 0.178 0.822
47 H 0.037 0.963
48 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 8.955 -24.283 -1.926 25.953
hybrid contribution 0.228 2.028 -1.189 2.362
sum 9.183 -22.255 -3.116 24.276
Atomic orbital electron populations
1.70003 1.07010 1.27293 1.50871 1.25682 0.95736 1.02183 0.94584
0.85676 0.78492 0.79115 0.78754 1.19676 1.20447 1.19907 1.21406
0.92795 0.92183 1.51368 0.93598 1.18661 0.92889 0.91122 0.94147
0.98416 1.21494 0.99148 0.96705 0.97076 1.21632 0.97157 0.93938
1.02075 1.22260 0.94702 1.00850 0.87610 1.59333 1.22072 1.01670
1.37218 1.20245 0.87870 0.91426 0.96615 1.21672 1.02248 0.90209
1.04235 1.21331 0.90511 1.00357 0.97272 1.19921 0.93790 0.91189
1.02494 1.59484 1.04517 1.13538 1.41958 1.23113 1.03469 0.94211
0.90117 1.22170 0.85570 0.95057 1.03856 1.60732 1.23190 1.39524
1.08528 1.22117 0.98576 0.90291 0.95432 1.23106 0.87698 0.99483
1.01818 1.22967 0.99374 0.87861 0.99330 1.67535 1.03394 1.37636
1.16101 1.21681 0.94676 0.86911 0.98786 0.92860 0.91725 0.95785
0.89723 0.92246 0.95033 0.87542 0.82446 0.81590 0.88560 0.94525
0.88063 0.90123 0.83653 0.88346 0.90289 0.93723 0.89735 0.82157
0.96327 0.93405
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -53.69 11.37 21.45 0.24 -53.45 16
2 C 0.02 0.99 5.31 84.65 0.45 1.44 16
3 Si 0.95 44.94 29.54 68.60 2.03 46.96 16
4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16
5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16
7 C -0.54 -31.40 8.56 25.60 0.22 -31.18 16
8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16
9 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16
10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16
11 C -0.11 -5.15 5.03 30.67 0.15 -5.00 16
12 C -0.11 -4.12 6.09 30.65 0.19 -3.93 16
13 C 0.07 2.40 5.25 86.33 0.45 2.85 16
14 N -0.49 -19.24 4.69 -701.78 -3.29 -22.53 16
15 C 0.27 9.52 6.41 132.97 0.85 10.37 16
16 C -0.16 -4.22 9.18 22.48 0.21 -4.01 16
17 C -0.07 -1.44 9.31 22.56 0.21 -1.23 16
18 C 0.03 0.61 5.65 38.20 0.22 0.83 16
19 N -0.48 -8.51 4.77 -694.16 -3.31 -11.82 16
20 C 0.02 0.24 5.38 86.31 0.46 0.70 16
21 C 0.06 0.66 6.72 86.31 0.58 1.24 16
22 N -0.69 -8.00 6.91 -513.42 -3.55 -11.54 16
23 C 0.07 0.80 6.72 86.31 0.58 1.38 16
24 C 0.01 0.12 4.30 86.31 0.37 0.49 16
25 C 0.06 1.86 10.00 84.76 0.85 2.71 16
26 N -0.53 -19.52 8.68 -192.61 -1.67 -21.19 16
27 C 0.11 5.07 3.87 86.33 0.33 5.40 16
28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
29 H 0.06 3.50 6.18 -2.39 -0.01 3.49 16
30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16
32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16
33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
34 H 0.11 2.75 6.67 -2.39 -0.02 2.73 16
35 H 0.16 3.38 7.14 -2.91 -0.02 3.36 16
36 H 0.17 2.44 7.27 -2.91 -0.02 2.42 16
37 H 0.10 1.09 6.88 -2.39 -0.02 1.07 16
38 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16
39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.35 3.41 8.89 -89.70 -0.80 2.62 16
42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16
43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16
44 H 0.04 0.71 7.60 -2.38 -0.02 0.69 16
45 H 0.08 1.41 7.19 -2.39 -0.02 1.39 16
46 H 0.16 4.01 5.82 -2.91 -0.02 3.99 16
47 H 0.02 0.91 8.11 -2.39 -0.02 0.90 16
48 H 0.05 2.43 7.71 -2.39 -0.02 2.41 16
Total: -1.00 -68.61 364.25 -3.29 -71.91
By element:
Atomic # 1 Polarization: 16.76 SS G_CDS: 0.16 Total: 16.92 kcal
Atomic # 6 Polarization: -21.35 SS G_CDS: 6.10 Total: -15.25 kcal
Atomic # 7 Polarization: -108.96 SS G_CDS: -11.58 Total: -120.54 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -68.61 -3.29 -71.91 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166740797.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 111.174 kcal
(2) G-P(sol) polarization free energy of solvation -68.613 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds