Wall clock time and date at job start Tue Mar 31 2020 10:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08997 * 109.50818 * 300.35926 * 9 7 2 11 11 C 1.53121 * 109.50138 * 60.47780 * 9 7 2 12 12 C 1.53116 * 109.16058 * 177.59200 * 11 9 7 13 13 C 1.53038 * 109.28034 * 302.34574 * 12 11 9 14 14 N 1.46843 * 109.52415 * 59.17999 * 13 12 11 15 15 C 1.39314 * 111.00359 * 174.15890 * 14 13 12 16 16 C 1.39079 * 119.62556 * 304.21444 * 15 14 13 17 17 C 1.38289 * 119.17306 * 179.97438 * 16 15 14 18 18 C 1.39408 * 118.44033 * 0.02562 * 17 16 15 19 19 N 1.40051 * 120.40396 * 179.97438 * 18 17 16 20 20 C 1.46956 * 111.00233 * 56.19607 * 19 18 17 21 21 C 1.53044 * 109.36641 * 183.18993 * 20 19 18 22 22 N 1.46964 * 109.36390 * 301.59399 * 21 20 19 23 23 C 1.46963 * 110.87504 * 59.32405 * 22 21 20 24 24 C 1.46955 * 110.99966 * 179.97438 * 19 18 17 25 25 C 1.38635 * 119.19053 * 359.97438 * 18 17 16 26 26 N 1.31996 * 120.74901 * 359.75041 * 25 18 17 27 27 C 1.46851 * 111.19882 * 298.25989 * 14 13 12 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.52290 * 297.49568 * 11 9 7 30 30 H 1.08998 * 109.52301 * 57.69067 * 11 9 7 31 31 H 1.09007 * 109.50682 * 182.40442 * 12 11 9 32 32 H 1.09005 * 109.50693 * 62.28859 * 12 11 9 33 33 H 1.09000 * 109.46377 * 299.16096 * 13 12 11 34 34 H 1.09003 * 109.46516 * 179.19594 * 13 12 11 35 35 H 1.08004 * 120.41747 * 359.97438 * 16 15 14 36 36 H 1.07996 * 120.77388 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.48633 * 303.15833 * 20 19 18 38 38 H 1.09007 * 109.49115 * 63.21728 * 20 19 18 39 39 H 1.09000 * 109.48747 * 181.63616 * 21 20 19 40 40 H 1.08998 * 109.50729 * 61.57421 * 21 20 19 41 41 H 1.00897 * 111.00131 * 295.45619 * 22 21 20 42 42 H 1.08997 * 109.48982 * 180.71406 * 23 22 21 43 43 H 1.08997 * 109.51148 * 60.65549 * 23 22 21 44 44 H 1.09006 * 109.48972 * 296.77594 * 24 19 18 45 45 H 1.09003 * 109.49213 * 56.82020 * 24 19 18 46 46 H 1.08000 * 119.62583 * 180.02562 * 25 18 17 47 47 H 1.09002 * 109.45689 * 301.72551 * 27 14 13 48 48 H 1.08994 * 109.46554 * 181.75633 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6233 -2.5529 0.8947 11 6 0.3742 -2.5887 -1.2466 12 6 -0.3413 -3.9423 -1.2632 13 6 0.6987 -5.0642 -1.2213 14 7 1.5114 -4.9348 -0.0051 15 6 2.3812 -6.0145 0.1314 16 6 1.8738 -7.3094 0.1395 17 6 2.7456 -8.3742 0.2751 18 6 4.1078 -8.1053 0.3996 19 7 5.0272 -9.1525 0.5396 20 6 4.9159 -10.1036 -0.5751 21 6 5.8787 -11.2707 -0.3444 22 7 7.2504 -10.7556 -0.2304 23 6 7.3616 -9.8045 0.8844 24 6 6.3988 -8.6374 0.6532 25 6 4.5413 -6.7885 0.3831 26 7 3.6813 -5.7966 0.2465 27 6 2.2451 -3.6628 0.0105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3638 -1.7867 -1.2326 30 1 0.9979 -2.4956 -2.1357 31 1 -0.9342 -4.0295 -2.1737 32 1 -0.9948 -4.0193 -0.3941 33 1 1.3431 -4.9950 -2.0977 34 1 0.1921 -6.0293 -1.2185 35 1 0.8120 -7.4812 0.0412 36 1 2.3797 -9.3903 0.2842 37 1 3.8946 -10.4803 -0.6311 38 1 5.1703 -9.6013 -1.5085 39 1 5.8189 -11.9628 -1.1843 40 1 5.6076 -11.7899 0.5748 41 1 7.5517 -10.3346 -1.0964 42 1 8.3828 -9.4277 0.9405 43 1 7.1074 -10.3065 1.8180 44 1 6.6699 -8.1187 -0.2664 45 1 6.4588 -7.9447 1.4927 46 1 5.5951 -6.5721 0.4786 47 1 2.8821 -3.6002 -0.8717 48 1 2.8614 -3.6100 0.9079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740797.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:55 Heat of formation + Delta-G solvation = 39.268556 kcal Electronic energy + Delta-G solvation = -26628.062565 eV Core-core repulsion = 23102.857070 eV Total energy + Delta-G solvation = -3525.205495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.99550 -40.50834 -38.95482 -36.13583 -35.12270 -33.51219 -33.27790 -32.06087 -31.64556 -29.61730 -27.11802 -26.55287 -25.71739 -24.68737 -23.80163 -22.69818 -22.57765 -21.43954 -20.47713 -19.03722 -18.42924 -17.66812 -17.51258 -16.60864 -16.38144 -16.10303 -15.93183 -15.82118 -15.54496 -15.21214 -15.06584 -14.96680 -14.67294 -14.48654 -14.12437 -14.04786 -13.93245 -13.52590 -13.25817 -13.06750 -12.86739 -12.71162 -12.57116 -12.36366 -12.34295 -11.99915 -11.90677 -11.80834 -11.58869 -11.33885 -11.04517 -10.86029 -10.71101 -10.40622 -10.35955 -9.87377 -9.43089 -8.53689 -8.11083 -6.24895 0.13269 0.32758 1.39375 1.41078 1.48838 2.37522 2.44063 2.73379 2.89736 3.15791 3.30262 3.50077 3.78713 3.90512 3.95973 3.99279 4.04419 4.15089 4.16544 4.17976 4.23080 4.36142 4.39557 4.52290 4.57956 4.59055 4.65171 4.71837 4.73709 4.80627 4.85046 4.93867 4.98711 5.01424 5.02907 5.11361 5.12718 5.30238 5.32899 5.48874 5.60306 5.74686 5.83706 5.98031 5.99818 5.99987 6.12060 6.33844 6.37611 6.40397 6.84387 7.11267 7.42482 8.93866 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.002763 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.972641 B =10130.597201 C =11098.012706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.017 3.983 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.046 0.954 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.106 4.106 12 C -0.110 4.110 13 C 0.071 3.929 14 N -0.486 5.486 15 C 0.271 3.729 16 C -0.161 4.161 17 C -0.067 4.067 18 C 0.026 3.974 19 N -0.478 5.478 20 C 0.018 3.982 21 C 0.063 3.937 22 N -0.691 5.691 23 C 0.066 3.934 24 C 0.008 3.992 25 C 0.065 3.935 26 N -0.533 5.533 27 C 0.106 3.894 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.023 0.977 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.106 0.894 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.345 0.655 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.084 0.916 46 H 0.161 0.839 47 H 0.018 0.982 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 -24.443 -3.085 26.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.064 0.936 9 C 0.032 3.968 10 H 0.016 0.984 11 C -0.144 4.144 12 C -0.148 4.148 13 C -0.054 4.054 14 N -0.203 5.203 15 C 0.038 3.962 16 C -0.184 4.184 17 C -0.095 4.095 18 C -0.074 4.074 19 N -0.195 5.195 20 C -0.109 4.109 21 C -0.067 4.067 22 N -0.320 5.320 23 C -0.064 4.064 24 C -0.121 4.121 25 C -0.095 4.095 26 N -0.247 5.247 27 C -0.021 4.021 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.125 0.875 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.163 0.837 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.103 0.897 46 H 0.178 0.822 47 H 0.037 0.963 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.955 -24.283 -1.926 25.953 hybrid contribution 0.228 2.028 -1.189 2.362 sum 9.183 -22.255 -3.116 24.276 Atomic orbital electron populations 1.70003 1.07010 1.27293 1.50871 1.25682 0.95736 1.02183 0.94584 0.85676 0.78492 0.79115 0.78754 1.19676 1.20447 1.19907 1.21406 0.92795 0.92183 1.51368 0.93598 1.18661 0.92889 0.91122 0.94147 0.98416 1.21494 0.99148 0.96705 0.97076 1.21632 0.97157 0.93938 1.02075 1.22260 0.94702 1.00850 0.87610 1.59333 1.22072 1.01670 1.37218 1.20245 0.87870 0.91426 0.96615 1.21672 1.02248 0.90209 1.04235 1.21331 0.90511 1.00357 0.97272 1.19921 0.93790 0.91189 1.02494 1.59484 1.04517 1.13538 1.41958 1.23113 1.03469 0.94211 0.90117 1.22170 0.85570 0.95057 1.03856 1.60732 1.23190 1.39524 1.08528 1.22117 0.98576 0.90291 0.95432 1.23106 0.87698 0.99483 1.01818 1.22967 0.99374 0.87861 0.99330 1.67535 1.03394 1.37636 1.16101 1.21681 0.94676 0.86911 0.98786 0.92860 0.91725 0.95785 0.89723 0.92246 0.95033 0.87542 0.82446 0.81590 0.88560 0.94525 0.88063 0.90123 0.83653 0.88346 0.90289 0.93723 0.89735 0.82157 0.96327 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.69 11.37 21.45 0.24 -53.45 16 2 C 0.02 0.99 5.31 84.65 0.45 1.44 16 3 Si 0.95 44.94 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.40 8.56 25.60 0.22 -31.18 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.05 2.72 2.26 -11.49 -0.03 2.69 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.11 -5.15 5.03 30.67 0.15 -5.00 16 12 C -0.11 -4.12 6.09 30.65 0.19 -3.93 16 13 C 0.07 2.40 5.25 86.33 0.45 2.85 16 14 N -0.49 -19.24 4.69 -701.78 -3.29 -22.53 16 15 C 0.27 9.52 6.41 132.97 0.85 10.37 16 16 C -0.16 -4.22 9.18 22.48 0.21 -4.01 16 17 C -0.07 -1.44 9.31 22.56 0.21 -1.23 16 18 C 0.03 0.61 5.65 38.20 0.22 0.83 16 19 N -0.48 -8.51 4.77 -694.16 -3.31 -11.82 16 20 C 0.02 0.24 5.38 86.31 0.46 0.70 16 21 C 0.06 0.66 6.72 86.31 0.58 1.24 16 22 N -0.69 -8.00 6.91 -513.42 -3.55 -11.54 16 23 C 0.07 0.80 6.72 86.31 0.58 1.38 16 24 C 0.01 0.12 4.30 86.31 0.37 0.49 16 25 C 0.06 1.86 10.00 84.76 0.85 2.71 16 26 N -0.53 -19.52 8.68 -192.61 -1.67 -21.19 16 27 C 0.11 5.07 3.87 86.33 0.33 5.40 16 28 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.06 3.50 6.18 -2.39 -0.01 3.49 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.11 2.75 6.67 -2.39 -0.02 2.73 16 35 H 0.16 3.38 7.14 -2.91 -0.02 3.36 16 36 H 0.17 2.44 7.27 -2.91 -0.02 2.42 16 37 H 0.10 1.09 6.88 -2.39 -0.02 1.07 16 38 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.35 3.41 8.89 -89.70 -0.80 2.62 16 42 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.04 0.71 7.60 -2.38 -0.02 0.69 16 45 H 0.08 1.41 7.19 -2.39 -0.02 1.39 16 46 H 0.16 4.01 5.82 -2.91 -0.02 3.99 16 47 H 0.02 0.91 8.11 -2.39 -0.02 0.90 16 48 H 0.05 2.43 7.71 -2.39 -0.02 2.41 16 Total: -1.00 -68.61 364.25 -3.29 -71.91 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.16 Total: 16.92 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 6.10 Total: -15.25 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -11.58 Total: -120.54 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.61 -3.29 -71.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740797.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.174 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds