Wall clock time and date at job start Tue Mar 31 2020 11:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00374 * 2 1 4 4 H 1.48498 * 109.47065 * 240.00344 * 3 2 1 5 5 H 1.48506 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47441 * 119.99639 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00359 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49956 * 300.07425 * 9 7 2 11 11 C 1.53117 * 109.50316 * 180.02562 * 9 7 2 12 12 C 1.53127 * 109.15794 * 182.40349 * 11 9 7 13 13 C 1.53040 * 109.27797 * 57.64987 * 12 11 9 14 14 N 1.46850 * 109.52427 * 300.82092 * 13 12 11 15 15 C 1.38990 * 110.99785 * 185.83668 * 14 13 12 16 16 C 1.39178 * 120.04365 * 236.04623 * 15 14 13 17 17 N 1.32033 * 120.07653 * 180.28254 * 16 15 14 18 18 C 1.32065 * 120.17085 * 359.48443 * 17 16 15 19 19 C 1.39127 * 120.08457 * 0.51927 * 18 17 16 20 20 N 1.38995 * 120.04103 * 179.76466 * 19 18 17 21 21 C 1.46851 * 111.00077 * 124.18630 * 20 19 18 22 22 C 1.53034 * 109.52555 * 174.16356 * 21 20 19 23 23 C 1.53118 * 109.28058 * 59.17434 * 22 21 20 24 24 C 1.53123 * 109.16143 * 302.34802 * 23 22 21 25 25 C 1.46847 * 111.00273 * 359.97438 * 20 19 18 26 26 N 1.32735 * 120.03865 * 56.07522 * 15 14 13 27 27 C 1.46844 * 111.19697 * 61.74397 * 14 13 12 28 28 H 0.97001 * 119.99827 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.52700 * 62.49859 * 11 9 7 30 30 H 1.09000 * 109.57451 * 302.33330 * 11 9 7 31 31 H 1.08997 * 109.49985 * 297.71051 * 12 11 9 32 32 H 1.08989 * 109.50095 * 177.59301 * 12 11 9 33 33 H 1.08993 * 109.46151 * 180.80623 * 13 12 11 34 34 H 1.08999 * 109.45026 * 60.83060 * 13 12 11 35 35 H 1.08002 * 119.95776 * 359.97438 * 16 15 14 36 36 H 1.08009 * 119.95713 * 180.25386 * 18 17 16 37 37 H 1.09004 * 109.45854 * 294.17560 * 21 20 19 38 38 H 1.08998 * 109.46140 * 54.14175 * 21 20 19 39 39 H 1.09006 * 109.49989 * 299.23808 * 22 21 20 40 40 H 1.08994 * 109.54129 * 179.13773 * 22 21 20 41 41 H 1.09000 * 109.52195 * 182.44551 * 23 22 21 42 42 H 1.08997 * 109.52279 * 62.25394 * 23 22 21 43 43 H 1.08992 * 109.50277 * 297.70991 * 24 23 22 44 44 H 1.09002 * 109.53219 * 177.61086 * 24 23 22 45 45 H 1.09000 * 109.45708 * 305.85385 * 25 20 19 46 46 H 1.09002 * 109.46158 * 65.83074 * 25 20 19 47 47 H 1.09003 * 109.46518 * 58.27247 * 27 14 13 48 48 H 1.09001 * 109.46318 * 178.24430 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6228 -2.5567 0.8895 11 6 2.2453 -3.6636 0.0018 12 6 1.4728 -4.9842 -0.0588 13 6 0.5908 -4.9967 -1.3095 14 7 -0.3431 -3.8643 -1.2627 15 6 -1.2462 -3.9197 -2.3178 16 6 -1.3643 -2.8426 -3.1912 17 7 -2.2260 -2.8922 -4.1903 18 6 -2.9715 -3.9673 -4.3710 19 6 -2.8592 -5.0480 -3.5021 20 7 -3.6478 -6.1770 -3.6902 21 6 -2.8194 -7.3838 -3.8086 22 6 -3.7207 -8.6191 -3.8683 23 6 -4.6600 -8.5020 -5.0718 24 6 -5.4767 -7.2126 -4.9484 25 6 -4.5245 -6.0181 -4.8575 26 7 -1.9976 -4.9998 -2.4933 27 6 0.3754 -2.5837 -1.2518 28 1 -0.4850 0.8401 -0.0004 29 1 2.8419 -3.6321 0.9134 30 1 2.9009 -3.5849 -0.8655 31 1 0.8473 -5.0810 0.8285 32 1 2.1762 -5.8156 -0.1013 33 1 0.0286 -5.9297 -1.3481 34 1 1.2182 -4.9136 -2.1969 35 1 -0.7539 -1.9631 -3.0485 36 1 -3.6724 -4.0058 -5.1919 37 1 -2.2217 -7.3261 -4.7183 38 1 -2.1591 -7.4572 -2.9445 39 1 -4.3088 -8.6849 -2.9528 40 1 -3.1068 -9.5137 -3.9715 41 1 -5.3332 -9.3589 -5.0932 42 1 -4.0736 -8.4752 -5.9902 43 1 -6.0923 -7.2564 -4.0501 44 1 -6.1171 -7.1017 -5.8235 45 1 -5.1026 -5.0998 -4.7551 46 1 -3.9188 -5.9670 -5.7623 47 1 1.0037 -2.5121 -2.1396 48 1 -0.3432 -1.7641 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:30 Heat of formation + Delta-G solvation = 60.412995 kcal Electronic energy + Delta-G solvation = -27166.713259 eV Core-core repulsion = 23642.424656 eV Total energy + Delta-G solvation = -3524.288603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21450 -39.32779 -37.93396 -34.44711 -34.32381 -32.84024 -32.00735 -31.19756 -29.80098 -28.54931 -25.60742 -25.03924 -24.60499 -23.57942 -22.68661 -21.46813 -21.27908 -19.99725 -18.89661 -17.69959 -17.19911 -16.42285 -16.19505 -15.60620 -15.34277 -14.78213 -14.68383 -14.51087 -14.23446 -13.94593 -13.78384 -13.55287 -13.42062 -12.97524 -12.84376 -12.65457 -12.36176 -12.18863 -11.88121 -11.49013 -11.25493 -11.19215 -11.00524 -10.94820 -10.87252 -10.73326 -10.68579 -10.56841 -10.32109 -10.26170 -10.05367 -9.59074 -9.27762 -9.06624 -8.95817 -8.44081 -8.08709 -7.51437 -6.08547 -4.16288 1.20125 1.56753 3.18415 3.28604 3.34497 3.36035 3.99560 4.05042 4.37815 4.46954 4.55606 4.63741 4.67442 4.80660 4.91834 5.04654 5.14960 5.23626 5.26024 5.28370 5.34933 5.40603 5.51971 5.54051 5.57106 5.59777 5.65721 5.73728 5.81232 5.83388 5.94026 6.01537 6.07736 6.25865 6.32857 6.41946 6.49050 6.55003 6.62876 6.79557 6.83753 6.93393 7.01066 7.29066 7.52806 7.64931 7.80007 7.92179 7.99773 8.25493 8.36881 8.88605 9.50040 10.97354 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.003257 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.857044 B = 8595.260972 C = 9570.448489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.055 3.945 10 H 0.038 0.962 11 C -0.115 4.115 12 C -0.118 4.118 13 C 0.073 3.927 14 N -0.469 5.469 15 C 0.320 3.680 16 C -0.021 4.021 17 N -0.398 5.398 18 C -0.051 4.051 19 C 0.295 3.705 20 N -0.472 5.472 21 C 0.065 3.935 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.117 4.117 25 C 0.051 3.949 26 N -0.489 5.489 27 C 0.055 3.945 28 H 0.264 0.736 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.040 0.960 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.028 0.972 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -15.452 -10.393 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.036 3.964 10 H 0.056 0.944 11 C -0.152 4.152 12 C -0.156 4.156 13 C -0.053 4.053 14 N -0.184 5.184 15 C 0.082 3.918 16 C -0.187 4.187 17 N -0.111 5.111 18 C -0.216 4.216 19 C 0.058 3.942 20 N -0.189 5.189 21 C -0.060 4.060 22 C -0.156 4.156 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.076 4.076 26 N -0.213 5.213 27 C -0.070 4.070 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.194 0.806 36 H 0.177 0.823 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.969 -15.476 -9.481 19.822 hybrid contribution 1.002 1.215 -1.038 1.886 sum -6.967 -14.261 -10.518 19.041 Atomic orbital electron populations 1.69826 1.05842 1.26971 1.49927 1.25016 0.94893 0.99242 0.94744 0.86640 0.79622 0.83012 0.78667 1.20232 1.21223 1.20214 1.21108 0.93005 0.90152 1.51329 0.92308 1.18695 0.92109 0.92137 0.93448 0.94369 1.21731 0.98541 0.94401 1.00568 1.21669 0.97844 0.98620 0.97429 1.22038 0.92797 0.92413 0.98006 1.58423 1.17431 1.07378 1.35155 1.20752 0.93203 0.89729 0.88082 1.23944 1.00493 1.01730 0.92562 1.68153 1.01865 1.23117 1.17969 1.23449 1.04347 0.92101 1.01661 1.20362 0.90712 0.92394 0.90695 1.58286 1.19912 1.01440 1.39286 1.22149 0.94438 0.87528 1.01933 1.21640 0.98084 0.96651 0.99264 1.21621 0.98411 0.97803 0.98294 1.21613 0.97549 0.93610 1.02702 1.22337 0.95057 1.00040 0.90135 1.67557 1.07757 1.27784 1.18167 1.22922 0.97754 0.86490 0.99814 0.92596 0.92758 0.93395 0.91426 0.92409 0.90506 0.94722 0.80572 0.82283 0.94195 0.88915 0.90733 0.91048 0.91528 0.92094 0.90748 0.90875 0.89543 0.93242 0.95373 0.86511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.35 55.43 0.63 -23.77 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.49 8.56 -34.44 -0.29 -13.79 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.06 1.31 2.26 -91.69 -0.21 1.11 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.27 5.23 -26.61 -0.14 -2.41 16 12 C -0.12 -2.01 6.09 -26.64 -0.16 -2.18 16 13 C 0.07 1.30 5.35 -3.83 -0.02 1.28 16 14 N -0.47 -9.65 4.73 -173.13 -0.82 -10.47 16 15 C 0.32 6.37 6.44 -154.73 -1.00 5.38 16 16 C -0.02 -0.41 9.99 -17.12 -0.17 -0.58 16 17 N -0.40 -7.34 10.48 -12.70 -0.13 -7.48 16 18 C -0.05 -0.81 9.99 -17.12 -0.17 -0.98 16 19 C 0.29 4.74 6.45 -154.72 -1.00 3.74 16 20 N -0.47 -6.08 4.73 -173.14 -0.82 -6.90 16 21 C 0.07 0.73 5.34 -3.83 -0.02 0.71 16 22 C -0.12 -1.01 6.09 -26.65 -0.16 -1.17 16 23 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 24 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 25 C 0.05 0.50 4.14 -3.84 -0.02 0.48 16 26 N -0.49 -9.06 9.10 -11.43 -0.10 -9.16 16 27 C 0.06 1.25 3.19 -3.84 -0.01 1.24 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.83 8.14 -51.94 -0.42 0.41 16 33 H 0.08 1.30 7.60 -51.93 -0.39 0.90 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.18 3.60 5.79 -52.49 -0.30 3.30 16 36 H 0.16 1.97 5.78 -52.48 -0.30 1.67 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.20 7.60 -51.93 -0.39 0.80 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.81 6.97 -51.93 -0.36 0.45 16 46 H 0.05 0.44 7.72 -51.93 -0.40 0.04 16 47 H 0.03 0.63 7.71 -51.93 -0.40 0.23 16 48 H 0.12 2.96 4.95 -51.93 -0.26 2.70 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -28.57 363.78 -12.43 -41.00 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.85 Total: 3.40 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.79 Total: -7.68 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -1.25 Total: -57.78 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.57 -12.43 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.414 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds