Wall clock time and date at job start Tue Mar 31 2020 11:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00374 * 2 1 4 4 H 1.48498 * 109.47065 * 240.00344 * 3 2 1 5 5 H 1.48506 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47441 * 119.99639 * 3 2 1 7 7 C 1.37874 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00072 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00359 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.49956 * 300.07425 * 9 7 2 11 11 C 1.53117 * 109.50316 * 180.02562 * 9 7 2 12 12 C 1.53127 * 109.15794 * 182.40349 * 11 9 7 13 13 C 1.53040 * 109.27797 * 57.64987 * 12 11 9 14 14 N 1.46850 * 109.52427 * 300.82092 * 13 12 11 15 15 C 1.38990 * 110.99785 * 185.83668 * 14 13 12 16 16 C 1.39178 * 120.04365 * 236.04623 * 15 14 13 17 17 N 1.32033 * 120.07653 * 180.28254 * 16 15 14 18 18 C 1.32065 * 120.17085 * 359.48443 * 17 16 15 19 19 C 1.39127 * 120.08457 * 0.51927 * 18 17 16 20 20 N 1.38995 * 120.04103 * 179.76466 * 19 18 17 21 21 C 1.46851 * 111.00077 * 124.18630 * 20 19 18 22 22 C 1.53034 * 109.52555 * 174.16356 * 21 20 19 23 23 C 1.53118 * 109.28058 * 59.17434 * 22 21 20 24 24 C 1.53123 * 109.16143 * 302.34802 * 23 22 21 25 25 C 1.46847 * 111.00273 * 359.97438 * 20 19 18 26 26 N 1.32735 * 120.03865 * 56.07522 * 15 14 13 27 27 C 1.46844 * 111.19697 * 61.74397 * 14 13 12 28 28 H 0.97001 * 119.99827 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.52700 * 62.49859 * 11 9 7 30 30 H 1.09000 * 109.57451 * 302.33330 * 11 9 7 31 31 H 1.08997 * 109.49985 * 297.71051 * 12 11 9 32 32 H 1.08989 * 109.50095 * 177.59301 * 12 11 9 33 33 H 1.08993 * 109.46151 * 180.80623 * 13 12 11 34 34 H 1.08999 * 109.45026 * 60.83060 * 13 12 11 35 35 H 1.08002 * 119.95776 * 359.97438 * 16 15 14 36 36 H 1.08009 * 119.95713 * 180.25386 * 18 17 16 37 37 H 1.09004 * 109.45854 * 294.17560 * 21 20 19 38 38 H 1.08998 * 109.46140 * 54.14175 * 21 20 19 39 39 H 1.09006 * 109.49989 * 299.23808 * 22 21 20 40 40 H 1.08994 * 109.54129 * 179.13773 * 22 21 20 41 41 H 1.09000 * 109.52195 * 182.44551 * 23 22 21 42 42 H 1.08997 * 109.52279 * 62.25394 * 23 22 21 43 43 H 1.08992 * 109.50277 * 297.70991 * 24 23 22 44 44 H 1.09002 * 109.53219 * 177.61086 * 24 23 22 45 45 H 1.09000 * 109.45708 * 305.85385 * 25 20 19 46 46 H 1.09002 * 109.46158 * 65.83074 * 25 20 19 47 47 H 1.09003 * 109.46518 * 58.27247 * 27 14 13 48 48 H 1.09001 * 109.46318 * 178.24430 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6228 -2.5567 0.8895 11 6 2.2453 -3.6636 0.0018 12 6 1.4728 -4.9842 -0.0588 13 6 0.5908 -4.9967 -1.3095 14 7 -0.3431 -3.8643 -1.2627 15 6 -1.2462 -3.9197 -2.3178 16 6 -1.3643 -2.8426 -3.1912 17 7 -2.2260 -2.8922 -4.1903 18 6 -2.9715 -3.9673 -4.3710 19 6 -2.8592 -5.0480 -3.5021 20 7 -3.6478 -6.1770 -3.6902 21 6 -2.8194 -7.3838 -3.8086 22 6 -3.7207 -8.6191 -3.8683 23 6 -4.6600 -8.5020 -5.0718 24 6 -5.4767 -7.2126 -4.9484 25 6 -4.5245 -6.0181 -4.8575 26 7 -1.9976 -4.9998 -2.4933 27 6 0.3754 -2.5837 -1.2518 28 1 -0.4850 0.8401 -0.0004 29 1 2.8419 -3.6321 0.9134 30 1 2.9009 -3.5849 -0.8655 31 1 0.8473 -5.0810 0.8285 32 1 2.1762 -5.8156 -0.1013 33 1 0.0286 -5.9297 -1.3481 34 1 1.2182 -4.9136 -2.1969 35 1 -0.7539 -1.9631 -3.0485 36 1 -3.6724 -4.0058 -5.1919 37 1 -2.2217 -7.3261 -4.7183 38 1 -2.1591 -7.4572 -2.9445 39 1 -4.3088 -8.6849 -2.9528 40 1 -3.1068 -9.5137 -3.9715 41 1 -5.3332 -9.3589 -5.0932 42 1 -4.0736 -8.4752 -5.9902 43 1 -6.0923 -7.2564 -4.0501 44 1 -6.1171 -7.1017 -5.8235 45 1 -5.1026 -5.0998 -4.7551 46 1 -3.9188 -5.9670 -5.7623 47 1 1.0037 -2.5121 -2.1396 48 1 -0.3432 -1.7641 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743259.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:29 Heat of formation + Delta-G solvation = 43.893841 kcal Electronic energy + Delta-G solvation = -27167.429584 eV Core-core repulsion = 23642.424656 eV Total energy + Delta-G solvation = -3525.004927 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54642 -40.51954 -39.27642 -35.96240 -35.50918 -34.55556 -33.31627 -31.99080 -31.56009 -29.86790 -27.24114 -26.40252 -25.92017 -24.82116 -23.79954 -22.86809 -22.69223 -20.81357 -20.48734 -19.06517 -18.61919 -18.11932 -17.49754 -17.14999 -16.52666 -16.39862 -15.78454 -15.59992 -15.49862 -15.32081 -14.90718 -14.58148 -14.43841 -14.35235 -14.28551 -14.22679 -13.82987 -13.45375 -13.13533 -12.84954 -12.65461 -12.54597 -12.46693 -12.28124 -12.21290 -12.18087 -11.83243 -11.79035 -11.52786 -11.46575 -11.39734 -11.10280 -10.94366 -10.87675 -10.53041 -10.37783 -9.35454 -8.96812 -8.11342 -6.26374 -0.17391 0.15769 1.43913 1.44259 1.52207 2.00841 2.42886 2.61667 2.69908 3.18036 3.37764 3.41761 3.71053 3.77475 3.89613 3.94991 4.03517 4.08609 4.12616 4.20277 4.26975 4.32108 4.35080 4.47587 4.54677 4.56551 4.67889 4.77631 4.79184 4.83262 4.86025 4.93884 4.97025 5.01402 5.13110 5.21151 5.21954 5.24727 5.26250 5.30012 5.46283 5.54720 5.58524 5.79061 5.81710 5.90203 6.02895 6.14188 6.34570 6.51639 6.85217 6.88901 7.43334 8.92820 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.003257 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.857044 B = 8595.260972 C = 9570.448489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.051 3.949 10 H 0.000 1.000 11 C -0.109 4.109 12 C -0.109 4.109 13 C 0.074 3.926 14 N -0.483 5.483 15 C 0.306 3.694 16 C -0.047 4.047 17 N -0.409 5.409 18 C -0.041 4.041 19 C 0.300 3.700 20 N -0.477 5.477 21 C 0.065 3.935 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.043 3.957 26 N -0.501 5.501 27 C 0.078 3.922 28 H 0.262 0.738 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.039 0.961 35 H 0.158 0.842 36 H 0.198 0.802 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.089 0.911 46 H 0.064 0.936 47 H 0.022 0.978 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 -17.565 -12.189 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.032 3.968 10 H 0.018 0.982 11 C -0.146 4.146 12 C -0.146 4.146 13 C -0.050 4.050 14 N -0.198 5.198 15 C 0.070 3.930 16 C -0.211 4.211 17 N -0.123 5.123 18 C -0.207 4.207 19 C 0.061 3.939 20 N -0.194 5.194 21 C -0.061 4.061 22 C -0.151 4.151 23 C -0.158 4.158 24 C -0.150 4.150 25 C -0.083 4.083 26 N -0.226 5.226 27 C -0.048 4.048 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.175 0.825 36 H 0.215 0.785 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.082 0.918 47 H 0.040 0.960 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.534 -17.604 -11.267 22.576 hybrid contribution 1.017 1.737 -0.554 2.088 sum -7.517 -15.867 -11.821 21.166 Atomic orbital electron populations 1.69989 1.07189 1.27378 1.50790 1.25760 0.95585 1.02436 0.94511 0.85680 0.78403 0.79099 0.78918 1.19469 1.21304 1.19614 1.21473 0.93276 0.91426 1.51034 0.92166 1.18647 0.92581 0.93315 0.92256 0.98221 1.21623 0.97812 0.94245 1.00952 1.21627 0.97992 0.98281 0.96725 1.22124 0.92636 0.91792 0.98493 1.58413 1.18033 1.07094 1.36264 1.20663 0.93670 0.90364 0.88316 1.23626 1.01937 1.01532 0.94041 1.68131 1.02141 1.24372 1.17611 1.24083 1.03588 0.90946 1.02059 1.20788 0.89675 0.93714 0.89681 1.58381 1.19397 1.00776 1.40886 1.22206 0.94748 0.87885 1.01218 1.21634 0.98030 0.95703 0.99757 1.21632 0.98343 0.98172 0.97700 1.21627 0.97179 0.92766 1.03455 1.22584 0.95025 1.01482 0.89219 1.67567 1.08500 1.27195 1.19305 1.22408 0.96631 0.87015 0.98776 0.92933 0.92348 0.92904 0.92212 0.88531 0.89400 0.94293 0.82526 0.78521 0.93596 0.91053 0.91621 0.89447 0.89898 0.91263 0.91555 0.88460 0.89223 0.91820 0.95964 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.56 11.35 21.45 0.24 -52.32 16 2 C 0.02 0.90 5.30 84.65 0.45 1.35 16 3 Si 0.95 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -28.67 8.56 25.60 0.22 -28.45 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.05 2.54 2.26 -11.49 -0.03 2.51 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.11 -4.31 5.23 30.68 0.16 -4.15 16 12 C -0.11 -3.62 6.09 30.65 0.19 -3.43 16 13 C 0.07 2.63 5.35 86.33 0.46 3.09 16 14 N -0.48 -20.61 4.73 -701.65 -3.32 -23.93 16 15 C 0.31 12.58 6.44 132.98 0.86 13.44 16 16 C -0.05 -1.95 9.99 84.89 0.85 -1.11 16 17 N -0.41 -15.21 10.48 -194.09 -2.03 -17.25 16 18 C -0.04 -1.23 9.99 84.87 0.85 -0.38 16 19 C 0.30 9.33 6.45 132.96 0.86 10.19 16 20 N -0.48 -11.38 4.73 -701.68 -3.32 -14.69 16 21 C 0.06 1.33 5.34 86.32 0.46 1.80 16 22 C -0.11 -1.62 6.09 30.64 0.19 -1.44 16 23 C -0.12 -1.27 6.00 30.67 0.18 -1.08 16 24 C -0.11 -1.30 6.09 30.65 0.19 -1.11 16 25 C 0.04 0.69 4.14 86.32 0.36 1.05 16 26 N -0.50 -18.64 9.10 -190.07 -1.73 -20.37 16 27 C 0.08 3.72 3.19 86.33 0.28 3.99 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.09 2.91 7.60 -2.39 -0.02 2.89 16 34 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.16 6.97 5.79 -2.91 -0.02 6.95 16 36 H 0.20 4.28 5.78 -2.91 -0.02 4.27 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 1.78 7.60 -2.39 -0.02 1.76 16 39 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 1.39 6.97 -2.39 -0.02 1.38 16 46 H 0.06 0.89 7.72 -2.39 -0.02 0.87 16 47 H 0.02 1.06 7.71 -2.39 -0.02 1.04 16 48 H 0.09 4.63 4.95 -2.39 -0.01 4.62 16 Total: -1.00 -64.63 363.78 -0.68 -65.31 By element: Atomic # 1 Polarization: 20.95 SS G_CDS: 0.94 Total: 21.89 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.51 Total: -3.74 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -10.16 Total: -128.56 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.63 -0.68 -65.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743259.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.202 kcal (2) G-P(sol) polarization free energy of solvation -64.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds