Wall clock time and date at job start Tue Mar 31 2020 11:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47174 * 240.00272 * 3 2 1 5 5 H 1.48496 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46713 * 120.00492 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.53026 * 299.90148 * 9 7 2 11 11 C 1.53099 * 109.48672 * 179.81213 * 9 7 2 12 12 C 1.53126 * 109.15071 * 182.39686 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.38391 * 110.99804 * 185.83615 * 14 13 12 16 16 N 1.32496 * 119.18160 * 235.78622 * 15 14 13 17 17 C 1.32485 * 120.93378 * 180.02562 * 16 15 14 18 18 C 1.38124 * 119.29086 * 0.02562 * 17 16 15 19 19 C 1.39637 * 118.49148 * 0.02562 * 18 17 16 20 20 N 1.38538 * 120.48569 * 179.97438 * 19 18 17 21 21 C 1.46842 * 111.00190 * 304.21278 * 20 19 18 22 22 C 1.53043 * 109.52022 * 174.15946 * 21 20 19 23 23 C 1.53112 * 109.27943 * 59.18077 * 22 21 20 24 24 C 1.53123 * 109.16023 * 302.34270 * 23 22 21 25 25 C 1.46853 * 110.99861 * 179.97438 * 20 19 18 26 26 N 1.32443 * 119.17636 * 55.52284 * 15 14 13 27 27 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 28 28 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.52931 * 62.49434 * 11 9 7 30 30 H 1.09001 * 109.52470 * 302.29560 * 11 9 7 31 31 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 32 32 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 33 33 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 34 34 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 35 35 H 1.08000 * 120.35200 * 179.97438 * 17 16 15 36 36 H 1.08003 * 120.75578 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.46031 * 294.17340 * 21 20 19 38 38 H 1.09001 * 109.46190 * 54.14302 * 21 20 19 39 39 H 1.08997 * 109.50289 * 299.23753 * 22 21 20 40 40 H 1.09008 * 109.53174 * 179.14000 * 22 21 20 41 41 H 1.08996 * 109.52343 * 182.44025 * 23 22 21 42 42 H 1.09005 * 109.52944 * 62.24690 * 23 22 21 43 43 H 1.08998 * 109.50208 * 297.71765 * 24 23 22 44 44 H 1.09003 * 109.53530 * 177.61560 * 24 23 22 45 45 H 1.08995 * 109.46083 * 305.85818 * 25 20 19 46 46 H 1.08998 * 109.46269 * 65.82358 * 25 20 19 47 47 H 1.09002 * 109.46481 * 58.27472 * 27 14 13 48 48 H 1.08994 * 109.46283 * 178.25325 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 2.2457 -3.6631 -0.0059 12 6 1.4731 -4.9838 -0.0664 13 6 0.5861 -4.9937 -1.3134 14 7 -0.3478 -3.8615 -1.2604 15 6 -1.2513 -3.9145 -2.3073 16 7 -1.3570 -2.8755 -3.1226 17 6 -2.2109 -2.8887 -4.1355 18 6 -3.0000 -4.0038 -4.3396 19 6 -2.8674 -5.0831 -3.4636 20 7 -3.6387 -6.2219 -3.6295 21 6 -5.0695 -5.8917 -3.6393 22 6 -5.8816 -7.1463 -3.9688 23 6 -5.5947 -8.2242 -2.9199 24 6 -4.0915 -8.5148 -2.8962 25 6 -3.3308 -7.2209 -2.5981 26 7 -1.9851 -5.0047 -2.4724 27 6 0.3705 -2.5808 -1.2495 28 1 -0.4850 0.8400 0.0004 29 1 2.8460 -3.6336 0.9033 30 1 2.8968 -3.5818 -0.8763 31 1 0.8512 -5.0826 0.8233 32 1 2.1766 -5.8150 -0.1136 33 1 0.0239 -5.9266 -1.3519 34 1 1.2097 -4.9085 -2.2034 35 1 -2.2896 -2.0364 -4.7941 36 1 -3.7037 -4.0402 -5.1581 37 1 -5.3623 -5.5166 -2.6587 38 1 -5.2606 -5.1271 -4.3924 39 1 -5.5990 -7.5140 -4.9552 40 1 -6.9446 -6.9048 -3.9611 41 1 -6.1376 -9.1342 -3.1748 42 1 -5.9130 -7.8717 -1.9387 43 1 -3.7808 -8.9041 -3.8658 44 1 -3.8747 -9.2510 -2.1220 45 1 -2.2595 -7.4215 -2.5952 46 1 -3.6314 -6.8398 -1.6222 47 1 0.9951 -2.5070 -2.1397 48 1 -0.3482 -1.7614 -1.2412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166743670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:46 Heat of formation + Delta-G solvation = 63.361586 kcal Electronic energy + Delta-G solvation = -27240.145256 eV Core-core repulsion = 23715.984514 eV Total energy + Delta-G solvation = -3524.160742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05796 -39.22223 -37.75645 -34.56406 -33.76930 -32.50037 -31.82710 -31.09932 -29.68265 -29.35287 -25.45656 -24.85922 -24.55815 -23.35718 -22.64961 -21.42449 -21.17677 -19.98139 -18.75855 -17.71415 -17.15596 -16.32581 -15.60907 -15.26288 -15.15925 -14.77581 -14.66497 -14.45234 -14.18728 -14.01420 -13.66064 -13.58993 -13.35043 -13.14256 -12.76192 -12.63031 -12.38293 -12.19423 -11.84125 -11.46529 -11.18224 -10.94952 -10.84754 -10.79485 -10.71768 -10.56857 -10.51161 -10.29820 -10.19720 -10.16245 -9.95681 -9.50980 -9.07507 -8.88930 -8.69846 -8.52109 -8.29686 -7.63749 -5.96056 -4.03422 1.39273 1.51344 3.33705 3.36373 3.39545 3.41804 3.83879 4.21183 4.46222 4.49172 4.60999 4.63900 4.69323 4.97315 5.09334 5.14209 5.25756 5.30928 5.37764 5.38925 5.46396 5.49591 5.58655 5.60897 5.62996 5.66759 5.72739 5.76955 5.86764 5.88540 5.99131 6.09950 6.12753 6.31885 6.39818 6.46327 6.57371 6.66859 6.77000 6.86719 6.99469 7.10366 7.17897 7.41650 7.44278 7.76014 7.95681 8.06066 8.16470 8.44728 8.74527 9.00392 9.61606 11.09461 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.003358 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.050569 B = 8335.401998 C = 9200.747480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.051 3.949 10 H 0.034 0.966 11 C -0.115 4.115 12 C -0.116 4.116 13 C 0.076 3.924 14 N -0.460 5.460 15 C 0.529 3.471 16 N -0.554 5.554 17 C 0.186 3.814 18 C -0.293 4.293 19 C 0.372 3.628 20 N -0.473 5.473 21 C 0.061 3.939 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.120 4.120 25 C 0.066 3.934 26 N -0.575 5.575 27 C 0.077 3.923 28 H 0.262 0.738 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.693 -14.770 -8.722 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.032 3.968 10 H 0.052 0.948 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.051 4.051 14 N -0.178 5.178 15 C 0.173 3.827 16 N -0.275 5.275 17 C 0.020 3.980 18 C -0.320 4.320 19 C 0.130 3.870 20 N -0.191 5.191 21 C -0.065 4.065 22 C -0.154 4.154 23 C -0.162 4.162 24 C -0.158 4.158 25 C -0.061 4.061 26 N -0.300 5.300 27 C -0.048 4.048 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.180 0.820 36 H 0.155 0.845 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.299 -14.893 -7.902 19.756 hybrid contribution -0.039 1.316 -0.723 1.502 sum -10.337 -13.577 -8.625 19.120 Atomic orbital electron populations 1.69854 1.05812 1.26633 1.49804 1.25002 0.94846 0.99108 0.94832 0.86665 0.79602 0.83210 0.78551 1.20290 1.21314 1.20319 1.21069 0.92850 0.90250 1.51411 0.92486 1.18771 0.92147 0.92004 0.93904 0.94784 1.21737 0.98626 0.94489 1.00418 1.21659 0.97767 0.98699 0.97298 1.22033 0.92731 0.92188 0.98101 1.58552 1.17633 1.08256 1.33336 1.21129 0.91463 0.83807 0.86328 1.68632 1.22968 1.30178 1.05731 1.22875 0.87219 0.95884 0.92060 1.22000 1.08796 0.96193 1.05054 1.19779 0.90489 0.88471 0.88276 1.58900 1.05658 1.07791 1.46762 1.22247 0.84226 0.98453 1.01612 1.21617 0.99118 0.94677 1.00017 1.21622 0.96487 0.98836 0.99253 1.21673 0.94793 0.96840 1.02507 1.21992 1.01516 0.90425 0.92179 1.67917 1.12037 1.28513 1.21529 1.22612 0.97628 0.86103 0.98456 0.92847 0.92881 0.93456 0.91476 0.92381 0.90516 0.94782 0.82030 0.84465 0.93512 0.89655 0.90819 0.90932 0.91603 0.91994 0.91180 0.91040 0.89449 0.93031 0.95555 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.53 11.33 55.43 0.63 -24.91 16 2 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.25 8.56 -34.44 -0.29 -14.54 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.05 1.29 2.26 -91.70 -0.21 1.08 16 10 H 0.03 0.95 8.14 -51.92 -0.42 0.53 16 11 C -0.12 -2.42 5.22 -26.62 -0.14 -2.56 16 12 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 13 C 0.08 1.43 5.33 -3.83 -0.02 1.41 16 14 N -0.46 -10.15 4.72 -175.44 -0.83 -10.98 16 15 C 0.53 11.11 7.18 -322.89 -2.32 8.79 16 16 N -0.55 -11.48 8.67 -14.02 -0.12 -11.60 16 17 C 0.19 3.00 11.28 -17.31 -0.20 2.80 16 18 C -0.29 -4.18 9.26 -39.10 -0.36 -4.54 16 19 C 0.37 5.84 6.41 -154.83 -0.99 4.85 16 20 N -0.47 -6.00 4.68 -173.07 -0.81 -6.81 16 21 C 0.06 0.61 5.25 -3.83 -0.02 0.59 16 22 C -0.12 -0.90 6.09 -26.65 -0.16 -1.06 16 23 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 24 C -0.12 -1.07 6.09 -26.65 -0.16 -1.24 16 25 C 0.07 0.80 4.67 -3.83 -0.02 0.78 16 26 N -0.57 -10.65 8.04 -13.17 -0.11 -10.75 16 27 C 0.08 1.92 3.68 -3.84 -0.01 1.90 16 28 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 34 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.14 1.50 7.22 -52.48 -0.38 1.13 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.78 6.74 -51.93 -0.35 0.43 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.18 7.72 -51.93 -0.40 0.78 16 46 H 0.05 0.70 8.13 -51.93 -0.42 0.27 16 47 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 48 H 0.12 3.44 5.63 -51.93 -0.29 3.14 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -30.65 368.02 -14.15 -44.80 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.12 Total: 1.72 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -5.32 Total: -3.40 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -1.24 Total: -65.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.65 -14.15 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.164 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds