Wall clock time and date at job start Tue Mar 31 2020 11:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47174 * 240.00272 * 3 2 1 5 5 H 1.48496 * 109.47000 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46713 * 120.00492 * 3 2 1 7 7 C 1.37880 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00001 * 359.97438 * 7 2 1 10 10 H 1.09009 * 109.53026 * 299.90148 * 9 7 2 11 11 C 1.53099 * 109.48672 * 179.81213 * 9 7 2 12 12 C 1.53126 * 109.15071 * 182.39686 * 11 9 7 13 13 C 1.53039 * 109.28009 * 57.65227 * 12 11 9 14 14 N 1.46854 * 109.52227 * 300.82107 * 13 12 11 15 15 C 1.38391 * 110.99804 * 185.83615 * 14 13 12 16 16 N 1.32496 * 119.18160 * 235.78622 * 15 14 13 17 17 C 1.32485 * 120.93378 * 180.02562 * 16 15 14 18 18 C 1.38124 * 119.29086 * 0.02562 * 17 16 15 19 19 C 1.39637 * 118.49148 * 0.02562 * 18 17 16 20 20 N 1.38538 * 120.48569 * 179.97438 * 19 18 17 21 21 C 1.46842 * 111.00190 * 304.21278 * 20 19 18 22 22 C 1.53043 * 109.52022 * 174.15946 * 21 20 19 23 23 C 1.53112 * 109.27943 * 59.18077 * 22 21 20 24 24 C 1.53123 * 109.16023 * 302.34270 * 23 22 21 25 25 C 1.46853 * 110.99861 * 179.97438 * 20 19 18 26 26 N 1.32443 * 119.17636 * 55.52284 * 15 14 13 27 27 C 1.46847 * 111.19790 * 61.74204 * 14 13 12 28 28 H 0.96997 * 120.00425 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.52931 * 62.49434 * 11 9 7 30 30 H 1.09001 * 109.52470 * 302.29560 * 11 9 7 31 31 H 1.08994 * 109.50076 * 297.71308 * 12 11 9 32 32 H 1.09000 * 109.50123 * 177.59308 * 12 11 9 33 33 H 1.08993 * 109.46667 * 180.80353 * 13 12 11 34 34 H 1.09008 * 109.45973 * 60.82938 * 13 12 11 35 35 H 1.08000 * 120.35200 * 179.97438 * 17 16 15 36 36 H 1.08003 * 120.75578 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.46031 * 294.17340 * 21 20 19 38 38 H 1.09001 * 109.46190 * 54.14302 * 21 20 19 39 39 H 1.08997 * 109.50289 * 299.23753 * 22 21 20 40 40 H 1.09008 * 109.53174 * 179.14000 * 22 21 20 41 41 H 1.08996 * 109.52343 * 182.44025 * 23 22 21 42 42 H 1.09005 * 109.52944 * 62.24690 * 23 22 21 43 43 H 1.08998 * 109.50208 * 297.71765 * 24 23 22 44 44 H 1.09003 * 109.53530 * 177.61560 * 24 23 22 45 45 H 1.08995 * 109.46083 * 305.85818 * 25 20 19 46 46 H 1.08998 * 109.46269 * 65.82358 * 25 20 19 47 47 H 1.09002 * 109.46481 * 58.27472 * 27 14 13 48 48 H 1.08994 * 109.46283 * 178.25325 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6257 -2.5589 0.8903 11 6 2.2457 -3.6631 -0.0059 12 6 1.4731 -4.9838 -0.0664 13 6 0.5861 -4.9937 -1.3134 14 7 -0.3478 -3.8615 -1.2604 15 6 -1.2513 -3.9145 -2.3073 16 7 -1.3570 -2.8755 -3.1226 17 6 -2.2109 -2.8887 -4.1355 18 6 -3.0000 -4.0038 -4.3396 19 6 -2.8674 -5.0831 -3.4636 20 7 -3.6387 -6.2219 -3.6295 21 6 -5.0695 -5.8917 -3.6393 22 6 -5.8816 -7.1463 -3.9688 23 6 -5.5947 -8.2242 -2.9199 24 6 -4.0915 -8.5148 -2.8962 25 6 -3.3308 -7.2209 -2.5981 26 7 -1.9851 -5.0047 -2.4724 27 6 0.3705 -2.5808 -1.2495 28 1 -0.4850 0.8400 0.0004 29 1 2.8460 -3.6336 0.9033 30 1 2.8968 -3.5818 -0.8763 31 1 0.8512 -5.0826 0.8233 32 1 2.1766 -5.8150 -0.1136 33 1 0.0239 -5.9266 -1.3519 34 1 1.2097 -4.9085 -2.2034 35 1 -2.2896 -2.0364 -4.7941 36 1 -3.7037 -4.0402 -5.1581 37 1 -5.3623 -5.5166 -2.6587 38 1 -5.2606 -5.1271 -4.3924 39 1 -5.5990 -7.5140 -4.9552 40 1 -6.9446 -6.9048 -3.9611 41 1 -6.1376 -9.1342 -3.1748 42 1 -5.9130 -7.8717 -1.9387 43 1 -3.7808 -8.9041 -3.8658 44 1 -3.8747 -9.2510 -2.1220 45 1 -2.2595 -7.4215 -2.5952 46 1 -3.6314 -6.8398 -1.6222 47 1 0.9951 -2.5070 -2.1397 48 1 -0.3482 -1.7614 -1.2412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166743670.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:45 Heat of formation + Delta-G solvation = 47.178374 kcal Electronic energy + Delta-G solvation = -27240.847013 eV Core-core repulsion = 23715.984514 eV Total energy + Delta-G solvation = -3524.862499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37170 -40.42474 -39.19624 -35.79782 -35.37619 -34.23671 -33.09459 -31.97118 -31.45518 -30.72835 -27.11689 -26.24517 -26.00515 -24.52584 -23.79607 -22.96176 -22.61429 -20.79294 -20.48407 -19.08132 -18.59917 -18.09088 -17.15047 -16.54669 -16.36831 -16.30497 -15.86831 -15.61449 -15.48612 -15.25399 -14.95270 -14.88942 -14.43392 -14.42726 -14.22647 -14.07640 -14.04970 -13.53612 -13.17341 -12.85208 -12.64136 -12.31727 -12.23655 -12.18586 -12.10781 -11.93051 -11.81767 -11.63351 -11.54228 -11.42759 -11.31952 -11.12651 -10.90239 -10.86252 -10.45988 -10.11050 -9.74647 -9.14206 -8.08131 -6.23899 0.05299 0.23104 1.42121 1.44072 1.51683 2.17060 2.42548 2.48034 2.89185 3.19310 3.34900 3.75081 3.76112 3.89992 3.94435 4.05068 4.06501 4.10036 4.23596 4.27875 4.34104 4.35770 4.47335 4.48722 4.57257 4.60691 4.75515 4.78922 4.82929 4.85779 4.91231 4.93628 5.00798 5.05118 5.16154 5.20028 5.21594 5.24452 5.27514 5.33985 5.45428 5.52835 5.59728 5.76977 5.87917 5.96945 6.07704 6.14254 6.37846 6.49006 6.87379 7.31592 7.44986 8.95843 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.021094 B = 0.003358 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.050569 B = 8335.401998 C = 9200.747480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.047 3.953 10 H -0.003 1.003 11 C -0.109 4.109 12 C -0.107 4.107 13 C 0.079 3.921 14 N -0.476 5.476 15 C 0.506 3.494 16 N -0.598 5.598 17 C 0.172 3.828 18 C -0.271 4.271 19 C 0.360 3.640 20 N -0.466 5.466 21 C 0.055 3.945 22 C -0.110 4.110 23 C -0.124 4.124 24 C -0.113 4.113 25 C 0.067 3.933 26 N -0.584 5.584 27 C 0.106 3.894 28 H 0.260 0.740 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.194 0.806 36 H 0.179 0.821 37 H 0.033 0.967 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.005 0.995 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.716 -16.291 -10.320 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.077 0.923 9 C 0.028 3.972 10 H 0.016 0.984 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.047 4.047 14 N -0.195 5.195 15 C 0.148 3.852 16 N -0.320 5.320 17 C 0.008 3.992 18 C -0.297 4.297 19 C 0.117 3.883 20 N -0.184 5.184 21 C -0.070 4.070 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.151 4.151 25 C -0.060 4.060 26 N -0.310 5.310 27 C -0.021 4.021 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.211 0.789 36 H 0.196 0.804 37 H 0.052 0.948 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.050 0.950 47 H 0.023 0.977 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.353 -16.444 -9.530 22.139 hybrid contribution 0.154 1.712 -0.318 1.748 sum -11.199 -14.731 -9.848 20.962 Atomic orbital electron populations 1.70030 1.07293 1.27195 1.50529 1.25814 0.95628 1.02612 0.94435 0.85635 0.78366 0.78900 0.78885 1.19637 1.21048 1.19392 1.21457 0.93145 0.91611 1.51396 0.92341 1.18722 0.92655 0.93358 0.92467 0.98440 1.21620 0.97845 0.94422 1.00745 1.21622 0.97931 0.98242 0.96636 1.22101 0.92553 0.91723 0.98334 1.58530 1.18167 1.07601 1.35209 1.21078 0.92114 0.84971 0.86993 1.68559 1.25278 1.30757 1.07413 1.23469 0.86677 0.97692 0.91325 1.22381 1.07860 0.94550 1.04955 1.20328 0.90243 0.89863 0.87818 1.59060 1.06740 1.06480 1.46103 1.22459 0.82642 1.00433 1.01446 1.21629 0.99794 0.93207 1.00141 1.21644 0.95514 0.99844 0.99146 1.21650 0.95351 0.95020 1.03069 1.21986 1.00978 0.91821 0.91245 1.67892 1.12630 1.27699 1.22742 1.21968 0.96190 0.86927 0.96995 0.93093 0.92156 0.93391 0.91861 0.88330 0.89148 0.95215 0.78923 0.80393 0.94849 0.88201 0.90115 0.88815 0.89509 0.92559 0.90679 0.90011 0.91327 0.95000 0.97699 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.95 11.33 21.45 0.24 -54.71 16 2 C 0.01 0.83 5.30 84.66 0.45 1.28 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.54 -30.59 8.56 25.60 0.22 -30.37 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.05 2.50 2.26 -11.50 -0.03 2.47 16 10 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 11 C -0.11 -4.62 5.22 30.67 0.16 -4.46 16 12 C -0.11 -3.78 6.09 30.65 0.19 -3.59 16 13 C 0.08 3.01 5.33 86.32 0.46 3.47 16 14 N -0.48 -21.99 4.72 -708.98 -3.34 -25.33 16 15 C 0.51 22.01 7.18 261.52 1.88 23.89 16 16 N -0.60 -25.63 8.67 -198.27 -1.72 -27.35 16 17 C 0.17 5.46 11.28 84.57 0.95 6.41 16 18 C -0.27 -7.22 9.26 22.58 0.21 -7.02 16 19 C 0.36 11.00 6.41 133.18 0.85 11.85 16 20 N -0.47 -11.10 4.68 -701.49 -3.28 -14.38 16 21 C 0.06 0.99 5.25 86.33 0.45 1.44 16 22 C -0.11 -1.33 6.09 30.65 0.19 -1.14 16 23 C -0.12 -1.57 6.00 30.67 0.18 -1.38 16 24 C -0.11 -1.79 6.09 30.65 0.19 -1.60 16 25 C 0.07 1.57 4.67 86.32 0.40 1.98 16 26 N -0.58 -22.01 8.04 -195.57 -1.57 -23.58 16 27 C 0.11 5.57 3.68 86.32 0.32 5.88 16 28 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.09 3.19 7.54 -2.39 -0.02 3.17 16 34 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.19 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.18 3.20 7.22 -2.91 -0.02 3.18 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.10 1.48 6.74 -2.39 -0.02 1.47 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.86 7.72 -2.39 -0.02 1.84 16 46 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16 47 H 0.00 0.26 8.10 -2.39 -0.02 0.24 16 48 H 0.08 5.12 5.63 -2.39 -0.01 5.11 16 Total: -1.00 -70.95 368.02 0.35 -70.60 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.93 Total: 18.88 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 7.07 Total: 9.12 kcal Atomic # 7 Polarization: -135.67 SS G_CDS: -9.67 Total: -145.34 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.95 0.35 -70.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166743670.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.774 kcal (2) G-P(sol) polarization free energy of solvation -70.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds