Wall clock time and date at job start Tue Mar 31 2020 11:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46874 * 2 1 4 4 C 1.52994 * 109.47447 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47483 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99785 * 270.00267 * 5 4 3 7 7 H 1.07994 * 120.00033 * 6.31327 * 6 5 4 8 8 C 1.38822 * 119.99855 * 186.31875 * 6 5 4 9 9 N 1.31547 * 119.99964 * 6.81065 * 8 6 5 10 10 Si 1.86796 * 120.00045 * 186.81550 * 8 6 5 11 11 H 1.48498 * 109.47513 * 59.99678 * 10 8 6 12 12 H 1.48503 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46962 * 299.99758 * 10 8 6 14 14 C 1.38191 * 120.00258 * 90.00044 * 5 4 3 15 15 N 1.33102 * 120.85156 * 263.20575 * 14 5 4 16 16 C 1.31991 * 121.02850 * 180.23834 * 15 14 5 17 17 C 1.50706 * 118.62082 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46776 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.46792 * 300.00956 * 17 16 15 20 20 C 1.52997 * 109.47529 * 60.00996 * 17 16 15 21 21 N 1.31622 * 122.75487 * 0.04940 * 16 15 14 22 22 C 1.33112 * 120.72942 * 359.96454 * 21 16 15 23 23 N 1.36808 * 134.32251 * 180.02562 * 22 21 16 24 24 H 0.97003 * 124.98921 * 359.95782 * 23 22 21 25 25 C 1.37046 * 110.02023 * 179.97438 * 23 22 21 26 26 C 1.34395 * 109.82488 * 0.02562 * 25 23 22 27 27 C 1.40385 * 120.85333 * 83.47898 * 14 5 4 28 28 H 1.08999 * 109.47389 * 59.99797 * 1 2 3 29 29 H 1.09004 * 109.47029 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47000 * 299.99711 * 1 2 3 31 31 H 1.08996 * 109.47031 * 240.00368 * 2 1 3 32 32 H 1.08995 * 109.47518 * 119.99461 * 2 1 3 33 33 H 1.09005 * 109.46980 * 59.99783 * 3 2 1 34 34 H 1.09006 * 109.47054 * 300.00576 * 3 2 1 35 35 H 1.09005 * 109.46771 * 60.00078 * 4 3 2 36 36 H 1.08999 * 109.47044 * 300.00343 * 4 3 2 37 37 H 0.97005 * 119.99856 * 174.99478 * 9 8 6 38 38 H 1.08994 * 109.47674 * 59.99519 * 18 17 16 39 39 H 1.08999 * 109.47001 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47255 * 299.99512 * 18 17 16 41 41 H 1.09000 * 109.47241 * 60.00613 * 19 17 16 42 42 H 1.09005 * 109.47405 * 180.02562 * 19 17 16 43 43 H 1.09002 * 109.47376 * 300.00104 * 19 17 16 44 44 H 1.09000 * 109.46823 * 59.99725 * 20 17 16 45 45 H 1.08999 * 109.47355 * 179.97438 * 20 17 16 46 46 H 1.09002 * 109.46940 * 300.00553 * 20 17 16 47 47 H 1.08007 * 125.08788 * 179.97438 * 25 23 22 48 48 H 1.07999 * 126.59060 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2858 3.4700 -1.1854 7 1 4.0100 3.0004 -2.1180 8 6 4.8711 4.7288 -1.1886 9 7 5.3290 5.2441 -0.0682 10 14 5.0085 5.6910 -2.7838 11 1 3.6513 5.9250 -3.3392 12 1 5.6665 6.9958 -2.5198 13 1 5.8163 4.9172 -3.7605 14 6 4.2890 3.4747 1.1970 15 7 3.3722 4.2848 1.7214 16 6 3.5909 4.9117 2.8621 17 6 2.5151 5.8157 3.4068 18 6 2.9855 6.4304 4.7265 19 6 2.2273 6.9304 2.3991 20 6 1.2405 5.0043 3.6475 21 7 4.7093 4.7808 3.5437 22 6 5.6871 3.9932 3.1015 23 7 6.9291 3.6583 3.5671 24 1 7.3231 3.9899 4.3891 25 6 7.5352 2.7859 2.7012 26 6 6.7191 2.5323 1.6640 27 6 5.4987 3.3029 1.8883 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9290 -0.8909 36 1 3.9337 0.9287 0.8891 37 1 5.8025 6.0906 -0.0816 38 1 3.8934 7.0085 4.5549 39 1 2.2076 7.0846 5.1202 40 1 3.1907 5.6364 5.4445 41 1 1.8923 6.4926 1.4588 42 1 1.4495 7.5846 2.7932 43 1 3.1353 7.5086 2.2276 44 1 1.4456 4.2101 4.3653 45 1 0.4626 5.6580 4.0418 46 1 0.9056 4.5664 2.7071 47 1 8.5215 2.3657 2.8323 48 1 6.9255 1.8827 0.8263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167132156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:43 Heat of formation + Delta-G solvation = 88.312106 kcal Electronic energy + Delta-G solvation = -28249.701339 eV Core-core repulsion = 24726.622533 eV Total energy + Delta-G solvation = -3523.078807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65327 -38.15978 -36.83897 -35.05242 -34.05157 -31.67549 -31.14101 -29.81500 -28.26640 -27.47709 -26.70399 -26.60976 -24.54113 -23.29908 -22.47974 -21.16036 -20.43010 -19.71765 -18.86519 -17.93133 -17.13177 -15.50385 -15.20081 -14.89208 -14.61450 -14.26746 -14.24059 -13.61383 -13.56472 -13.39798 -13.31698 -13.18968 -12.55655 -12.37926 -12.27209 -12.05639 -11.96715 -11.64591 -11.33557 -11.25540 -11.07715 -11.05433 -10.82519 -10.76416 -10.68430 -10.56389 -10.36710 -10.28104 -10.27166 -10.01114 -9.87198 -9.48372 -9.23629 -8.96107 -7.84842 -7.75905 -7.20569 -6.99342 -5.75884 -3.33012 2.15020 2.80745 3.35287 3.40761 3.41474 3.58348 3.65150 4.35491 4.83527 5.03349 5.14738 5.33863 5.37397 5.42297 5.52147 5.56206 5.58519 5.67615 5.74802 5.89351 5.90593 6.07187 6.11710 6.13280 6.18078 6.24622 6.27415 6.29485 6.30714 6.40228 6.44190 6.46379 6.48544 6.51541 6.56335 6.65273 6.70523 6.86261 6.89778 6.92221 7.03396 7.09789 7.33677 7.45335 7.63009 7.87610 8.07931 8.23322 8.67486 9.17191 9.64180 9.80254 10.08094 11.19097 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.006753 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.199707 B = 4145.576723 C = 4795.738013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.158 3.842 5 N -0.550 5.550 6 C -0.258 4.258 7 H 0.085 0.915 8 C 0.006 3.994 9 N -0.892 5.892 10 Si 0.919 3.081 11 H -0.283 1.283 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.592 3.408 15 N -0.552 5.552 16 C 0.361 3.639 17 C 0.009 3.991 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.129 4.129 21 N -0.570 5.570 22 C 0.308 3.692 23 N -0.585 5.585 24 H 0.406 0.594 25 C 0.002 3.998 26 C -0.141 4.141 27 C -0.179 4.179 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.162 0.838 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -5.122 6.475 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.033 3.967 5 N -0.268 5.268 6 C -0.386 4.386 7 H 0.103 0.897 8 C -0.193 4.193 9 N -0.536 5.536 10 Si 0.749 3.251 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.350 3.650 15 N -0.274 5.274 16 C 0.090 3.910 17 C 0.007 3.993 18 C -0.178 4.178 19 C -0.185 4.185 20 C -0.187 4.187 21 N -0.293 5.293 22 C 0.071 3.929 23 N -0.194 5.194 24 H 0.241 0.759 25 C -0.122 4.122 26 C -0.168 4.168 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.086 0.914 47 H 0.179 0.821 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.979 -4.323 6.903 8.672 hybrid contribution 1.278 0.471 -0.928 1.648 sum -1.700 -3.851 5.976 7.310 Atomic orbital electron populations 1.21751 0.96549 1.00587 1.01717 1.21492 0.95308 0.98039 1.01173 1.22214 0.98297 0.94751 1.02554 1.20854 0.91990 0.84101 0.99801 1.41178 1.75223 1.09640 1.00781 1.19235 1.36239 0.99090 0.84030 0.89747 1.24842 0.99367 0.97642 0.97410 1.69245 1.40027 1.20029 1.24290 0.86087 0.77749 0.79129 0.82120 1.20897 1.21749 1.21004 1.17055 0.84121 0.81044 0.82738 1.68138 1.35778 1.11652 1.11801 1.21876 0.89294 0.92778 0.87073 1.19144 0.91693 0.93359 0.95152 1.21621 1.00212 1.00096 0.95826 1.21719 1.00711 0.96790 0.99244 1.21766 0.95682 0.99180 1.02117 1.66875 1.01619 1.22844 1.37992 1.18220 0.87240 0.95498 0.91971 1.41235 1.13115 1.42096 1.22921 0.75890 1.21497 0.98953 0.98724 0.93030 1.21410 0.93442 1.03454 0.98503 1.20572 0.97130 1.03826 0.97601 0.92920 0.93552 0.93013 0.92465 0.92730 0.92273 0.91844 0.92299 0.94133 0.92747 0.92468 0.93673 0.92619 0.91276 0.93233 0.93110 0.93423 0.92836 0.91435 0.82118 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.87 16 3 C -0.14 -2.47 5.54 -26.73 -0.15 -2.62 16 4 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 5 N -0.55 -13.35 2.63 -114.72 -0.30 -13.66 16 6 C -0.26 -6.76 9.78 -15.07 -0.15 -6.91 16 7 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 8 C 0.01 0.17 5.40 -17.46 -0.09 0.07 16 9 N -0.89 -25.26 9.82 55.49 0.55 -24.71 16 10 Si 0.92 21.86 29.56 -169.99 -5.03 16.84 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.59 14.79 3.69 -154.73 -0.57 14.22 16 15 N -0.55 -13.62 9.51 -9.82 -0.09 -13.71 16 16 C 0.36 8.19 6.25 -157.17 -0.98 7.21 16 17 C 0.01 0.17 0.91 -155.66 -0.14 0.02 16 18 C -0.12 -1.95 7.65 37.16 0.28 -1.66 16 19 C -0.13 -2.33 8.36 37.16 0.31 -2.02 16 20 C -0.13 -2.11 8.36 37.16 0.31 -1.80 16 21 N -0.57 -12.91 8.98 -10.03 -0.09 -13.00 16 22 C 0.31 6.93 8.48 -155.85 -1.32 5.60 16 23 N -0.59 -10.57 6.03 -12.11 -0.07 -10.64 16 24 H 0.41 5.92 8.96 -40.82 -0.37 5.56 16 25 C 0.00 0.03 11.83 -16.58 -0.20 -0.17 16 26 C -0.14 -2.90 11.08 -37.80 -0.42 -3.32 16 27 C -0.18 -4.26 5.32 -104.97 -0.56 -4.82 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 36 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.26 7.51 8.32 -40.82 -0.34 7.17 16 38 H 0.06 1.00 8.03 -51.93 -0.42 0.58 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 41 H 0.07 1.42 7.99 -51.93 -0.42 1.00 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.07 1.19 7.99 -51.93 -0.42 0.78 16 47 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 48 H 0.14 2.69 8.06 -52.49 -0.42 2.26 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -31.10 389.10 -10.99 -42.09 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.33 Total: 7.37 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.49 Total: 3.56 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -0.01 Total: -75.72 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.10 -10.99 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.407 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds