Wall clock time and date at job start Tue Mar 31 2020 11:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46874 * 2 1 4 4 C 1.52994 * 109.47447 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47483 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99785 * 270.00267 * 5 4 3 7 7 H 1.07994 * 120.00033 * 6.31327 * 6 5 4 8 8 C 1.38822 * 119.99855 * 186.31875 * 6 5 4 9 9 N 1.31547 * 119.99964 * 6.81065 * 8 6 5 10 10 Si 1.86796 * 120.00045 * 186.81550 * 8 6 5 11 11 H 1.48498 * 109.47513 * 59.99678 * 10 8 6 12 12 H 1.48503 * 109.47185 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46962 * 299.99758 * 10 8 6 14 14 C 1.38191 * 120.00258 * 90.00044 * 5 4 3 15 15 N 1.33102 * 120.85156 * 263.20575 * 14 5 4 16 16 C 1.31991 * 121.02850 * 180.23834 * 15 14 5 17 17 C 1.50706 * 118.62082 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.46776 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.46792 * 300.00956 * 17 16 15 20 20 C 1.52997 * 109.47529 * 60.00996 * 17 16 15 21 21 N 1.31622 * 122.75487 * 0.04940 * 16 15 14 22 22 C 1.33112 * 120.72942 * 359.96454 * 21 16 15 23 23 N 1.36808 * 134.32251 * 180.02562 * 22 21 16 24 24 H 0.97003 * 124.98921 * 359.95782 * 23 22 21 25 25 C 1.37046 * 110.02023 * 179.97438 * 23 22 21 26 26 C 1.34395 * 109.82488 * 0.02562 * 25 23 22 27 27 C 1.40385 * 120.85333 * 83.47898 * 14 5 4 28 28 H 1.08999 * 109.47389 * 59.99797 * 1 2 3 29 29 H 1.09004 * 109.47029 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47000 * 299.99711 * 1 2 3 31 31 H 1.08996 * 109.47031 * 240.00368 * 2 1 3 32 32 H 1.08995 * 109.47518 * 119.99461 * 2 1 3 33 33 H 1.09005 * 109.46980 * 59.99783 * 3 2 1 34 34 H 1.09006 * 109.47054 * 300.00576 * 3 2 1 35 35 H 1.09005 * 109.46771 * 60.00078 * 4 3 2 36 36 H 1.08999 * 109.47044 * 300.00343 * 4 3 2 37 37 H 0.97005 * 119.99856 * 174.99478 * 9 8 6 38 38 H 1.08994 * 109.47674 * 59.99519 * 18 17 16 39 39 H 1.08999 * 109.47001 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.47255 * 299.99512 * 18 17 16 41 41 H 1.09000 * 109.47241 * 60.00613 * 19 17 16 42 42 H 1.09005 * 109.47405 * 180.02562 * 19 17 16 43 43 H 1.09002 * 109.47376 * 300.00104 * 19 17 16 44 44 H 1.09000 * 109.46823 * 59.99725 * 20 17 16 45 45 H 1.08999 * 109.47355 * 179.97438 * 20 17 16 46 46 H 1.09002 * 109.46940 * 300.00553 * 20 17 16 47 47 H 1.08007 * 125.08788 * 179.97438 * 25 23 22 48 48 H 1.07999 * 126.59060 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2858 3.4700 -1.1854 7 1 4.0100 3.0004 -2.1180 8 6 4.8711 4.7288 -1.1886 9 7 5.3290 5.2441 -0.0682 10 14 5.0085 5.6910 -2.7838 11 1 3.6513 5.9250 -3.3392 12 1 5.6665 6.9958 -2.5198 13 1 5.8163 4.9172 -3.7605 14 6 4.2890 3.4747 1.1970 15 7 3.3722 4.2848 1.7214 16 6 3.5909 4.9117 2.8621 17 6 2.5151 5.8157 3.4068 18 6 2.9855 6.4304 4.7265 19 6 2.2273 6.9304 2.3991 20 6 1.2405 5.0043 3.6475 21 7 4.7093 4.7808 3.5437 22 6 5.6871 3.9932 3.1015 23 7 6.9291 3.6583 3.5671 24 1 7.3231 3.9899 4.3891 25 6 7.5352 2.7859 2.7012 26 6 6.7191 2.5323 1.6640 27 6 5.4987 3.3029 1.8883 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9329 0.9290 -0.8909 36 1 3.9337 0.9287 0.8891 37 1 5.8025 6.0906 -0.0816 38 1 3.8934 7.0085 4.5549 39 1 2.2076 7.0846 5.1202 40 1 3.1907 5.6364 5.4445 41 1 1.8923 6.4926 1.4588 42 1 1.4495 7.5846 2.7932 43 1 3.1353 7.5086 2.2276 44 1 1.4456 4.2101 4.3653 45 1 0.4626 5.6580 4.0418 46 1 0.9056 4.5664 2.7071 47 1 8.5215 2.3657 2.8323 48 1 6.9255 1.8827 0.8263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167132156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:42 Heat of formation + Delta-G solvation = 72.786030 kcal Electronic energy + Delta-G solvation = -28250.374600 eV Core-core repulsion = 24726.622533 eV Total energy + Delta-G solvation = -3523.752068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27183 -39.73354 -38.50337 -36.51217 -35.54852 -33.53653 -32.83061 -31.41310 -29.76968 -29.08137 -28.09002 -28.01171 -26.38764 -24.82741 -24.03335 -22.77752 -21.81633 -21.29798 -20.49186 -19.52690 -18.88236 -17.21726 -16.85245 -16.46037 -16.18068 -15.91739 -15.79967 -15.37694 -15.13423 -14.84613 -14.69763 -14.58696 -14.10419 -13.81570 -13.74691 -13.51876 -13.34143 -13.04165 -12.90922 -12.86022 -12.74428 -12.49350 -12.41980 -12.36194 -12.20654 -12.04149 -11.92631 -11.73505 -11.72110 -11.70291 -11.34582 -11.18212 -10.94746 -10.86035 -9.64040 -9.42630 -9.02143 -8.67071 -7.73445 -5.35679 0.50362 1.06599 1.42527 1.46381 1.50404 2.05419 2.13458 2.44020 3.12126 3.37440 3.48731 3.54168 3.96625 4.12545 4.18333 4.22156 4.26671 4.29206 4.37621 4.40508 4.50703 4.62125 4.76533 4.77838 4.82850 4.87133 4.94025 4.95353 5.01830 5.02656 5.04334 5.06675 5.08839 5.14980 5.18414 5.28209 5.29549 5.40274 5.47632 5.49473 5.54774 5.60724 5.62360 5.75121 5.85327 6.11435 6.35107 6.57187 7.04444 7.17770 7.79934 8.03965 8.13052 9.12273 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007948 B = 0.006753 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3522.199707 B = 4145.576723 C = 4795.738013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.124 4.124 4 C 0.155 3.845 5 N -0.563 5.563 6 C -0.258 4.258 7 H 0.090 0.910 8 C -0.045 4.045 9 N -0.909 5.909 10 Si 0.974 3.026 11 H -0.283 1.283 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.567 3.433 15 N -0.574 5.574 16 C 0.339 3.661 17 C 0.003 3.997 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.119 4.119 21 N -0.571 5.571 22 C 0.281 3.719 23 N -0.571 5.571 24 H 0.425 0.575 25 C 0.046 3.954 26 C -0.187 4.187 27 C -0.203 4.203 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.242 0.758 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.037 0.963 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.219 0.781 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.339 -5.973 7.555 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.163 4.163 4 C 0.031 3.969 5 N -0.282 5.282 6 C -0.386 4.386 7 H 0.108 0.892 8 C -0.240 4.240 9 N -0.555 5.555 10 Si 0.804 3.196 11 H -0.210 1.210 12 H -0.231 1.231 13 H -0.197 1.197 14 C 0.326 3.674 15 N -0.295 5.295 16 C 0.067 3.933 17 C 0.001 3.999 18 C -0.166 4.166 19 C -0.174 4.174 20 C -0.177 4.177 21 N -0.294 5.294 22 C 0.043 3.957 23 N -0.181 5.181 24 H 0.263 0.737 25 C -0.078 4.078 26 C -0.214 4.214 27 C -0.215 4.215 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.236 0.764 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.849 -5.206 8.006 9.966 hybrid contribution 1.291 0.661 -1.219 1.895 sum -1.558 -4.545 6.786 8.315 Atomic orbital electron populations 1.21726 0.95196 1.02048 1.01376 1.21439 0.96449 0.95133 1.02228 1.22016 0.96840 0.97114 1.00375 1.21034 0.93073 0.82490 1.00306 1.41375 1.75662 1.10875 1.00310 1.19524 1.34934 0.99074 0.85106 0.89235 1.25505 1.00112 0.98645 0.99778 1.69554 1.41022 1.19282 1.25623 0.85209 0.77435 0.77401 0.79583 1.20967 1.23090 1.19686 1.17346 0.84925 0.81830 0.83341 1.68107 1.36453 1.12120 1.12847 1.22686 0.90415 0.93295 0.86884 1.19379 0.91589 0.92986 0.95975 1.21523 1.00518 1.00150 0.94377 1.21624 1.00641 0.96954 0.98187 1.21680 0.95429 0.99485 1.01114 1.66975 1.01772 1.22723 1.37920 1.18597 0.88739 0.95947 0.92413 1.41313 1.11642 1.41539 1.23616 0.73653 1.22293 0.99674 0.95430 0.90408 1.21553 0.93680 1.05458 1.00664 1.20898 0.97747 1.04674 0.98220 0.93129 0.91139 0.93572 0.91082 0.91931 0.94735 0.93629 0.91258 0.93885 0.94684 0.94189 0.90194 0.92820 0.94346 0.89274 0.95453 0.93419 0.89297 0.93668 0.76417 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.91 71.98 0.71 -2.77 16 2 C -0.11 -3.11 5.93 30.60 0.18 -2.93 16 3 C -0.12 -4.53 5.54 30.59 0.17 -4.36 16 4 C 0.16 6.31 5.65 86.38 0.49 6.80 16 5 N -0.56 -28.30 2.63 -516.88 -1.36 -29.66 16 6 C -0.26 -13.87 9.78 84.04 0.82 -13.05 16 7 H 0.09 4.57 7.84 -2.91 -0.02 4.55 16 8 C -0.04 -2.48 5.40 84.88 0.46 -2.03 16 9 N -0.91 -53.46 9.82 21.65 0.21 -53.25 16 10 Si 0.97 46.17 29.56 68.60 2.03 48.20 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 14 C 0.57 29.37 3.69 133.43 0.49 29.87 16 15 N -0.57 -29.55 9.51 -184.98 -1.76 -31.31 16 16 C 0.34 15.79 6.25 138.74 0.87 16.66 16 17 C 0.00 0.11 0.91 -52.93 -0.05 0.07 16 18 C -0.11 -3.37 7.65 71.98 0.55 -2.82 16 19 C -0.12 -4.31 8.36 71.98 0.60 -3.71 16 20 C -0.12 -3.80 8.36 71.98 0.60 -3.20 16 21 N -0.57 -26.27 8.98 -185.63 -1.67 -27.94 16 22 C 0.28 12.70 8.48 134.01 1.14 13.84 16 23 N -0.57 -19.60 6.03 -192.21 -1.16 -20.76 16 24 H 0.42 11.31 8.96 -92.71 -0.83 10.48 16 25 C 0.05 1.45 11.83 83.00 0.98 2.43 16 26 C -0.19 -7.63 11.08 23.42 0.26 -7.37 16 27 C -0.20 -9.86 5.32 -20.09 -0.11 -9.96 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 30 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.07 2.61 8.04 -2.38 -0.02 2.59 16 36 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 37 H 0.24 14.62 8.32 -92.70 -0.77 13.84 16 38 H 0.04 1.36 8.03 -2.39 -0.02 1.34 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.68 8.03 -2.39 -0.02 1.66 16 41 H 0.04 1.63 7.99 -2.39 -0.02 1.61 16 42 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 1.62 7.99 -2.39 -0.02 1.60 16 47 H 0.22 4.23 8.06 -2.91 -0.02 4.20 16 48 H 0.14 5.40 8.06 -2.91 -0.02 5.37 16 Total: -1.00 -71.84 389.10 4.57 -67.27 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.10 Total: 29.97 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 8.17 Total: 17.48 kcal Atomic # 7 Polarization: -157.18 SS G_CDS: -5.73 Total: -162.91 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -71.84 4.57 -67.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167132156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.056 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds