Wall clock time and date at job start Tue Mar 31 2020 11:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 C 1.53002 * 109.47228 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47145 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99992 * 269.99920 * 5 4 3 7 7 H 1.08001 * 119.99666 * 6.26850 * 6 5 4 8 8 C 1.38826 * 120.00157 * 186.27120 * 6 5 4 9 9 N 1.31552 * 119.99951 * 6.76248 * 8 6 5 10 10 Si 1.86797 * 120.00023 * 186.76683 * 8 6 5 11 11 H 1.48494 * 109.47151 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47110 * 120.00077 * 10 8 6 13 13 H 1.48500 * 109.47031 * 239.99461 * 10 8 6 14 14 C 1.38197 * 120.00380 * 89.99791 * 5 4 3 15 15 N 1.33101 * 120.85853 * 263.36498 * 14 5 4 16 16 C 1.31985 * 121.03699 * 179.68493 * 15 14 5 17 17 C 1.50701 * 118.62460 * 180.25005 * 16 15 14 18 18 H 1.09004 * 109.47233 * 359.97438 * 17 16 15 19 19 C 1.52997 * 109.47346 * 239.97537 * 17 16 15 20 20 C 1.53001 * 109.47112 * 119.97627 * 17 16 15 21 21 C 1.52991 * 109.47288 * 184.99958 * 20 17 16 22 22 N 1.31616 * 122.74867 * 0.22446 * 16 15 14 23 23 C 1.33116 * 120.73152 * 0.02562 * 22 16 15 24 24 N 1.36811 * 134.31922 * 180.02562 * 23 22 16 25 25 H 0.97006 * 124.99124 * 359.97438 * 24 23 22 26 26 C 1.37043 * 110.01822 * 179.97438 * 24 23 22 27 27 C 1.34388 * 109.82668 * 359.97438 * 26 24 23 28 28 C 1.40395 * 120.85081 * 83.49008 * 14 5 4 29 29 H 1.08998 * 109.46750 * 59.99551 * 1 2 3 30 30 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46730 * 299.99903 * 1 2 3 32 32 H 1.08999 * 109.47426 * 239.99822 * 2 1 3 33 33 H 1.08998 * 109.47191 * 119.99815 * 2 1 3 34 34 H 1.09006 * 109.47180 * 59.99978 * 3 2 1 35 35 H 1.08998 * 109.46883 * 300.00004 * 3 2 1 36 36 H 1.08992 * 109.47098 * 60.00016 * 4 3 2 37 37 H 1.09005 * 109.46862 * 300.00059 * 4 3 2 38 38 H 0.96991 * 119.99745 * 174.99767 * 9 8 6 39 39 H 1.09000 * 109.47223 * 179.97438 * 19 17 16 40 40 H 1.08996 * 109.47007 * 300.00529 * 19 17 16 41 41 H 1.09004 * 109.47056 * 60.00061 * 19 17 16 42 42 H 1.09005 * 109.47222 * 305.00450 * 20 17 16 43 43 H 1.09001 * 109.46628 * 64.99605 * 20 17 16 44 44 H 1.09001 * 109.47574 * 60.00226 * 21 20 17 45 45 H 1.09004 * 109.47175 * 179.97438 * 21 20 17 46 46 H 1.08997 * 109.47555 * 300.00121 * 21 20 17 47 47 H 1.08005 * 125.08308 * 179.97438 * 26 24 23 48 48 H 1.08000 * 126.59085 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4694 -1.1841 7 1 4.0128 2.9991 -2.1169 8 6 4.8716 4.7286 -1.1871 9 7 5.3268 5.2451 -0.0662 10 14 5.0115 5.6895 -2.7829 11 1 4.4291 4.8934 -3.8928 12 1 4.2754 6.9728 -2.6541 13 1 6.4420 5.9662 -3.0702 14 6 4.2882 3.4748 1.1983 15 7 3.3698 4.2826 1.7233 16 6 3.5831 4.9015 2.8694 17 6 2.5037 5.7993 3.4169 18 1 1.6526 5.8013 2.7359 19 6 3.0470 7.2225 3.5583 20 6 2.0589 5.2848 4.7875 21 6 0.8792 6.1206 5.2878 22 7 4.6990 4.7669 3.5544 23 6 5.6799 3.9846 3.1097 24 7 6.9207 3.6481 3.5777 25 1 7.3106 3.9735 4.4042 26 6 7.5318 2.7839 2.7072 27 6 6.7200 2.5365 1.6652 28 6 5.4975 3.3033 1.8906 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9338 0.9286 -0.8890 37 1 3.9330 0.9288 0.8909 38 1 5.7997 6.0918 -0.0793 39 1 2.2661 7.8720 3.9539 40 1 3.8981 7.2205 4.2393 41 1 3.3639 7.5891 2.5819 42 1 1.7550 4.2414 4.7028 43 1 2.8866 5.3660 5.4921 44 1 0.0515 6.0394 4.5832 45 1 0.5620 5.7538 6.2640 46 1 1.1831 7.1640 5.3725 47 1 8.5183 2.3644 2.8390 48 1 6.9312 1.8945 0.8228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167135402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:46 Heat of formation + Delta-G solvation = 83.334778 kcal Electronic energy + Delta-G solvation = -27824.576503 eV Core-core repulsion = 24301.281864 eV Total energy + Delta-G solvation = -3523.294640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.64129 -38.00427 -36.77122 -35.07561 -34.08974 -31.65161 -31.12519 -30.03949 -29.44396 -28.11193 -27.30359 -24.59590 -24.56737 -23.23725 -21.71309 -21.23046 -20.43199 -19.73166 -19.41768 -18.19289 -17.11594 -15.60856 -15.25858 -14.89244 -14.62638 -14.34860 -14.29742 -14.06834 -13.58393 -13.54878 -13.31892 -13.16227 -12.56523 -12.45112 -12.35182 -12.26602 -12.00076 -11.80920 -11.43552 -11.32670 -11.19432 -11.07221 -10.83882 -10.73912 -10.67506 -10.56269 -10.32592 -10.24796 -10.21566 -10.01838 -9.86905 -9.48880 -9.24159 -8.96856 -7.88021 -7.78233 -7.21056 -7.00040 -5.76721 -3.33786 2.13455 2.79547 3.34699 3.40473 3.43366 3.57810 3.64527 4.34963 4.83112 5.07211 5.11094 5.29341 5.37516 5.37922 5.44400 5.51741 5.56270 5.58702 5.65308 5.80108 5.90630 5.93453 5.96134 6.00552 6.13431 6.14471 6.22313 6.26994 6.28716 6.30287 6.36421 6.39130 6.44709 6.46263 6.50883 6.55324 6.68077 6.79141 6.85258 6.89331 6.92056 7.09683 7.32161 7.43951 7.63465 7.86761 8.07180 8.22546 8.65791 9.16460 9.63368 9.79345 10.07357 11.18615 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007778 B = 0.006284 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.823246 B = 4454.351903 C = 5315.621050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.158 3.842 5 N -0.551 5.551 6 C -0.256 4.256 7 H 0.086 0.914 8 C 0.004 3.996 9 N -0.893 5.893 10 Si 0.920 3.080 11 H -0.277 1.277 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.592 3.408 15 N -0.559 5.559 16 C 0.357 3.643 17 C -0.012 4.012 18 H 0.086 0.914 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.150 4.150 22 N -0.568 5.568 23 C 0.309 3.691 24 N -0.585 5.585 25 H 0.406 0.594 26 C 0.002 3.998 27 C -0.140 4.140 28 C -0.179 4.179 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.259 0.741 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.162 0.838 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -5.006 7.338 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.033 3.967 5 N -0.269 5.269 6 C -0.384 4.384 7 H 0.104 0.896 8 C -0.194 4.194 9 N -0.537 5.537 10 Si 0.750 3.250 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.351 3.649 15 N -0.280 5.280 16 C 0.086 3.914 17 C -0.033 4.033 18 H 0.104 0.896 19 C -0.192 4.192 20 C -0.147 4.147 21 C -0.208 4.208 22 N -0.292 5.292 23 C 0.071 3.929 24 N -0.194 5.194 25 H 0.241 0.759 26 C -0.122 4.122 27 C -0.168 4.168 28 C -0.191 4.191 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.179 0.821 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.946 -4.219 7.752 9.304 hybrid contribution 1.224 0.482 -0.946 1.620 sum -1.722 -3.736 6.806 7.953 Atomic orbital electron populations 1.21750 0.96547 1.00592 1.01728 1.21492 0.95316 0.98013 1.01183 1.22217 0.98292 0.94779 1.02572 1.20858 0.92000 0.84056 0.99834 1.41209 1.75219 1.09691 1.00817 1.19340 1.36023 0.98998 0.84053 0.89592 1.24866 0.99429 0.97663 0.97492 1.69254 1.40307 1.19925 1.24219 0.85930 0.77161 0.79907 0.82010 1.20248 1.21620 1.21770 1.17069 0.84144 0.80912 0.82737 1.68248 1.35954 1.11942 1.11890 1.21967 0.89596 0.92887 0.86989 1.19782 0.94523 0.92926 0.96048 0.89555 1.21741 1.00651 0.94772 1.02053 1.21468 0.97965 0.99060 0.96164 1.21819 0.98296 1.00272 1.00374 1.66788 1.01523 1.22726 1.38174 1.18210 0.87263 0.95529 0.91875 1.41232 1.13135 1.42548 1.22456 0.75866 1.21499 0.98910 0.98903 0.92842 1.21409 0.93427 1.03483 0.98454 1.20566 0.97102 1.03946 0.97475 0.92910 0.93539 0.93014 0.92447 0.92722 0.92286 0.91821 0.92249 0.94099 0.92833 0.92822 0.92129 0.92837 0.92573 0.91324 0.92855 0.93225 0.92549 0.82087 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.14 -2.51 5.54 -26.73 -0.15 -2.66 16 4 C 0.16 3.16 5.65 -4.05 -0.02 3.14 16 5 N -0.55 -13.52 2.63 -114.72 -0.30 -13.82 16 6 C -0.26 -6.76 9.78 -15.07 -0.15 -6.91 16 7 H 0.09 2.18 7.84 -52.49 -0.41 1.77 16 8 C 0.00 0.11 5.40 -17.45 -0.09 0.02 16 9 N -0.89 -25.53 9.83 55.49 0.55 -24.99 16 10 Si 0.92 21.97 29.56 -169.99 -5.03 16.95 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 C 0.59 15.00 3.69 -154.72 -0.57 14.42 16 15 N -0.56 -14.16 10.06 -9.82 -0.10 -14.26 16 16 C 0.36 8.15 6.34 -157.18 -1.00 7.15 16 17 C -0.01 -0.22 2.71 -91.77 -0.25 -0.47 16 18 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 19 C -0.13 -2.29 8.84 37.16 0.33 -1.97 16 20 C -0.11 -1.67 5.25 -26.73 -0.14 -1.81 16 21 C -0.15 -1.85 9.67 37.15 0.36 -1.49 16 22 N -0.57 -12.79 9.85 -10.03 -0.10 -12.89 16 23 C 0.31 6.93 8.48 -155.85 -1.32 5.61 16 24 N -0.59 -10.52 6.03 -12.11 -0.07 -10.59 16 25 H 0.41 5.88 8.96 -40.82 -0.37 5.51 16 26 C 0.00 0.03 11.83 -16.58 -0.20 -0.16 16 27 C -0.14 -2.89 11.08 -37.81 -0.42 -3.31 16 28 C -0.18 -4.26 5.33 -104.97 -0.56 -4.82 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.11 8.04 -51.93 -0.42 0.69 16 37 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 38 H 0.26 7.50 8.32 -40.82 -0.34 7.16 16 39 H 0.05 0.75 6.57 -51.93 -0.34 0.41 16 40 H 0.06 1.05 7.99 -51.93 -0.42 0.64 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.09 8.11 -51.93 -0.42 0.66 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 47 H 0.16 1.98 8.06 -52.48 -0.42 1.55 16 48 H 0.14 2.70 8.06 -52.49 -0.42 2.27 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -31.62 388.92 -11.34 -42.96 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.18 Total: 7.45 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -3.97 Total: 3.33 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -0.03 Total: -76.55 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.62 -11.34 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.295 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds