Wall clock time and date at job start Tue Mar 31 2020 11:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47228 * 2 1 4 4 C 1.53002 * 109.47228 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47145 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99992 * 269.99920 * 5 4 3 7 7 H 1.08001 * 119.99666 * 6.26850 * 6 5 4 8 8 C 1.38826 * 120.00157 * 186.27120 * 6 5 4 9 9 N 1.31552 * 119.99951 * 6.76248 * 8 6 5 10 10 Si 1.86797 * 120.00023 * 186.76683 * 8 6 5 11 11 H 1.48494 * 109.47151 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47110 * 120.00077 * 10 8 6 13 13 H 1.48500 * 109.47031 * 239.99461 * 10 8 6 14 14 C 1.38197 * 120.00380 * 89.99791 * 5 4 3 15 15 N 1.33101 * 120.85853 * 263.36498 * 14 5 4 16 16 C 1.31985 * 121.03699 * 179.68493 * 15 14 5 17 17 C 1.50701 * 118.62460 * 180.25005 * 16 15 14 18 18 H 1.09004 * 109.47233 * 359.97438 * 17 16 15 19 19 C 1.52997 * 109.47346 * 239.97537 * 17 16 15 20 20 C 1.53001 * 109.47112 * 119.97627 * 17 16 15 21 21 C 1.52991 * 109.47288 * 184.99958 * 20 17 16 22 22 N 1.31616 * 122.74867 * 0.22446 * 16 15 14 23 23 C 1.33116 * 120.73152 * 0.02562 * 22 16 15 24 24 N 1.36811 * 134.31922 * 180.02562 * 23 22 16 25 25 H 0.97006 * 124.99124 * 359.97438 * 24 23 22 26 26 C 1.37043 * 110.01822 * 179.97438 * 24 23 22 27 27 C 1.34388 * 109.82668 * 359.97438 * 26 24 23 28 28 C 1.40395 * 120.85081 * 83.49008 * 14 5 4 29 29 H 1.08998 * 109.46750 * 59.99551 * 1 2 3 30 30 H 1.08997 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46730 * 299.99903 * 1 2 3 32 32 H 1.08999 * 109.47426 * 239.99822 * 2 1 3 33 33 H 1.08998 * 109.47191 * 119.99815 * 2 1 3 34 34 H 1.09006 * 109.47180 * 59.99978 * 3 2 1 35 35 H 1.08998 * 109.46883 * 300.00004 * 3 2 1 36 36 H 1.08992 * 109.47098 * 60.00016 * 4 3 2 37 37 H 1.09005 * 109.46862 * 300.00059 * 4 3 2 38 38 H 0.96991 * 119.99745 * 174.99767 * 9 8 6 39 39 H 1.09000 * 109.47223 * 179.97438 * 19 17 16 40 40 H 1.08996 * 109.47007 * 300.00529 * 19 17 16 41 41 H 1.09004 * 109.47056 * 60.00061 * 19 17 16 42 42 H 1.09005 * 109.47222 * 305.00450 * 20 17 16 43 43 H 1.09001 * 109.46628 * 64.99605 * 20 17 16 44 44 H 1.09001 * 109.47574 * 60.00226 * 21 20 17 45 45 H 1.09004 * 109.47175 * 179.97438 * 21 20 17 46 46 H 1.08997 * 109.47555 * 300.00121 * 21 20 17 47 47 H 1.08005 * 125.08308 * 179.97438 * 26 24 23 48 48 H 1.08000 * 126.59085 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4694 -1.1841 7 1 4.0128 2.9991 -2.1169 8 6 4.8716 4.7286 -1.1871 9 7 5.3268 5.2451 -0.0662 10 14 5.0115 5.6895 -2.7829 11 1 4.4291 4.8934 -3.8928 12 1 4.2754 6.9728 -2.6541 13 1 6.4420 5.9662 -3.0702 14 6 4.2882 3.4748 1.1983 15 7 3.3698 4.2826 1.7233 16 6 3.5831 4.9015 2.8694 17 6 2.5037 5.7993 3.4169 18 1 1.6526 5.8013 2.7359 19 6 3.0470 7.2225 3.5583 20 6 2.0589 5.2848 4.7875 21 6 0.8792 6.1206 5.2878 22 7 4.6990 4.7669 3.5544 23 6 5.6799 3.9846 3.1097 24 7 6.9207 3.6481 3.5777 25 1 7.3106 3.9735 4.4042 26 6 7.5318 2.7839 2.7072 27 6 6.7200 2.5365 1.6652 28 6 5.4975 3.3033 1.8906 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9338 0.9286 -0.8890 37 1 3.9330 0.9288 0.8909 38 1 5.7997 6.0918 -0.0793 39 1 2.2661 7.8720 3.9539 40 1 3.8981 7.2205 4.2393 41 1 3.3639 7.5891 2.5819 42 1 1.7550 4.2414 4.7028 43 1 2.8866 5.3660 5.4921 44 1 0.0515 6.0394 4.5832 45 1 0.5620 5.7538 6.2640 46 1 1.1831 7.1640 5.3725 47 1 8.5183 2.3644 2.8390 48 1 6.9312 1.8945 0.8228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167135402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:45 Heat of formation + Delta-G solvation = 67.169668 kcal Electronic energy + Delta-G solvation = -27825.277475 eV Core-core repulsion = 24301.281864 eV Total energy + Delta-G solvation = -3523.995612 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.27229 -39.60989 -38.43309 -36.47675 -35.57057 -33.53201 -32.82674 -31.57509 -30.81755 -29.59307 -28.90491 -26.47402 -25.94924 -24.72787 -23.17130 -22.85535 -21.81538 -21.30651 -20.94069 -19.89794 -18.87363 -17.26619 -16.95378 -16.48416 -16.18486 -15.89466 -15.70155 -15.62295 -15.34428 -15.13528 -14.64879 -14.53524 -14.07718 -13.82013 -13.77932 -13.74108 -13.36920 -13.09493 -12.99406 -12.93627 -12.84909 -12.52315 -12.39422 -12.31643 -12.13431 -12.03017 -11.92362 -11.74222 -11.61926 -11.52324 -11.35874 -11.18272 -10.96085 -10.87668 -9.69674 -9.46518 -9.04965 -8.68039 -7.75226 -5.37802 0.47579 1.03690 1.41635 1.44543 1.53163 2.04322 2.12305 2.42877 3.10277 3.35863 3.47107 3.56494 3.93371 4.11450 4.16700 4.21079 4.23087 4.29469 4.35509 4.39577 4.49884 4.58188 4.65349 4.73018 4.76105 4.78886 4.84792 4.93193 4.97751 5.01423 5.03650 5.10174 5.14664 5.16395 5.19512 5.24809 5.26366 5.39116 5.46108 5.48647 5.54127 5.55100 5.59581 5.71790 5.83745 6.10171 6.33340 6.54618 7.02310 7.15851 7.77710 8.00914 8.10858 9.11183 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007778 B = 0.006284 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3598.823246 B = 4454.351903 C = 5315.621050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.124 4.124 4 C 0.155 3.845 5 N -0.565 5.565 6 C -0.255 4.255 7 H 0.092 0.908 8 C -0.049 4.049 9 N -0.912 5.912 10 Si 0.977 3.023 11 H -0.261 1.261 12 H -0.304 1.304 13 H -0.292 1.292 14 C 0.568 3.432 15 N -0.590 5.590 16 C 0.336 3.664 17 C -0.013 4.013 18 H 0.075 0.925 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.143 4.143 22 N -0.566 5.566 23 C 0.283 3.717 24 N -0.570 5.570 25 H 0.425 0.575 26 C 0.048 3.952 27 C -0.186 4.186 28 C -0.202 4.202 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.243 0.757 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.022 0.978 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.221 0.779 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 -5.952 8.372 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.164 4.164 4 C 0.031 3.969 5 N -0.284 5.284 6 C -0.384 4.384 7 H 0.109 0.891 8 C -0.244 4.244 9 N -0.558 5.558 10 Si 0.806 3.194 11 H -0.186 1.186 12 H -0.232 1.232 13 H -0.220 1.220 14 C 0.328 3.672 15 N -0.312 5.312 16 C 0.065 3.935 17 C -0.034 4.034 18 H 0.093 0.907 19 C -0.180 4.180 20 C -0.136 4.136 21 C -0.201 4.201 22 N -0.289 5.289 23 C 0.044 3.956 24 N -0.180 5.180 25 H 0.264 0.736 26 C -0.076 4.076 27 C -0.213 4.213 28 C -0.215 4.215 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.042 0.958 42 H 0.062 0.938 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.237 0.763 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.544 -5.199 8.810 10.541 hybrid contribution 1.158 0.689 -1.218 1.816 sum -1.386 -4.510 7.593 8.939 Atomic orbital electron populations 1.21729 0.95216 1.02080 1.01359 1.21439 0.96439 0.95055 1.02292 1.22026 0.96896 0.97191 1.00329 1.21048 0.93041 0.82425 1.00426 1.41424 1.75647 1.10948 1.00346 1.19627 1.34662 0.98971 0.85101 0.89057 1.25559 1.00195 0.98707 0.99954 1.69557 1.41326 1.19277 1.25636 0.85034 0.76622 0.78064 0.79694 1.18551 1.23171 1.21951 1.17355 0.84932 0.81613 0.83339 1.68210 1.36937 1.12804 1.13225 1.22708 0.90772 0.93352 0.86709 1.19915 0.93013 0.93085 0.97338 0.90708 1.21654 1.01587 0.94407 1.00367 1.21372 0.99157 0.98891 0.94135 1.21777 0.96758 1.00258 1.01263 1.66870 1.01566 1.22567 1.37904 1.18584 0.88771 0.95937 0.92284 1.41306 1.11592 1.41933 1.23181 0.73559 1.22309 0.99630 0.95507 0.90187 1.21553 0.93602 1.05527 1.00644 1.20883 0.97679 1.04809 0.98105 0.93104 0.91070 0.93649 0.90973 0.91901 0.94914 0.93571 0.91076 0.93805 0.94624 0.89213 0.92482 0.95849 0.93805 0.91619 0.92611 0.91243 0.91412 0.76296 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.13 5.93 30.60 0.18 -2.94 16 3 C -0.12 -4.61 5.54 30.60 0.17 -4.45 16 4 C 0.16 6.33 5.65 86.38 0.49 6.82 16 5 N -0.56 -28.63 2.63 -516.87 -1.36 -29.99 16 6 C -0.26 -13.80 9.78 84.04 0.82 -12.97 16 7 H 0.09 4.69 7.84 -2.91 -0.02 4.67 16 8 C -0.05 -2.73 5.40 84.88 0.46 -2.27 16 9 N -0.91 -54.08 9.83 21.65 0.21 -53.86 16 10 Si 0.98 46.34 29.56 68.60 2.03 48.37 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 13 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 14 C 0.57 29.86 3.69 133.44 0.49 30.35 16 15 N -0.59 -31.34 10.06 -184.98 -1.86 -33.20 16 16 C 0.34 15.91 6.34 138.75 0.88 16.79 16 17 C -0.01 -0.48 2.71 -11.54 -0.03 -0.52 16 18 H 0.07 2.95 8.09 -2.38 -0.02 2.93 16 19 C -0.12 -4.20 8.84 71.98 0.64 -3.57 16 20 C -0.10 -2.97 5.25 30.59 0.16 -2.81 16 21 C -0.14 -3.24 9.67 71.98 0.70 -2.54 16 22 N -0.57 -25.95 9.85 -185.65 -1.83 -27.78 16 23 C 0.28 12.74 8.48 134.00 1.14 13.88 16 24 N -0.57 -19.37 6.03 -192.22 -1.16 -20.53 16 25 H 0.43 11.14 8.96 -92.70 -0.83 10.31 16 26 C 0.05 1.49 11.83 83.00 0.98 2.47 16 27 C -0.19 -7.60 11.08 23.42 0.26 -7.34 16 28 C -0.20 -9.86 5.33 -20.09 -0.11 -9.97 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 37 H 0.04 1.73 8.04 -2.38 -0.02 1.71 16 38 H 0.24 14.64 8.32 -92.72 -0.77 13.87 16 39 H 0.09 2.38 6.57 -2.39 -0.02 2.37 16 40 H 0.06 1.98 7.99 -2.39 -0.02 1.96 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 2.03 8.11 -2.39 -0.02 2.01 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.07 1.38 6.57 -2.39 -0.02 1.37 16 47 H 0.22 4.16 8.06 -2.91 -0.02 4.14 16 48 H 0.14 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -72.81 388.92 4.08 -68.74 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: 0.11 Total: 30.16 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 7.94 Total: 18.11 kcal Atomic # 7 Polarization: -159.38 SS G_CDS: -6.00 Total: -165.38 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -72.81 4.08 -68.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.905 kcal (2) G-P(sol) polarization free energy of solvation -72.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds