Wall clock time and date at job start Tue Mar 31 2020 11:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 C 1.53002 * 109.46872 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46774 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99907 * 269.99676 * 5 4 3 7 7 H 1.08001 * 119.99666 * 6.27279 * 6 5 4 8 8 C 1.38826 * 120.00157 * 186.27549 * 6 5 4 9 9 N 1.31552 * 119.99951 * 6.76248 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 186.77034 * 8 6 5 11 11 H 1.48494 * 109.47500 * 59.99333 * 10 8 6 12 12 H 1.48500 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46660 * 299.99556 * 10 8 6 14 14 C 1.38197 * 120.00465 * 89.99975 * 5 4 3 15 15 N 1.33108 * 120.85334 * 263.36080 * 14 5 4 16 16 C 1.31979 * 121.03725 * 179.68480 * 15 14 5 17 17 C 1.50693 * 118.63061 * 180.21085 * 16 15 14 18 18 H 1.09004 * 109.47168 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47869 * 120.01729 * 17 16 15 20 20 C 1.53002 * 109.47075 * 240.02167 * 17 16 15 21 21 C 1.52997 * 109.47080 * 174.99639 * 20 17 16 22 22 N 1.31624 * 122.74600 * 0.22446 * 16 15 14 23 23 C 1.33114 * 120.73300 * 0.02562 * 22 16 15 24 24 N 1.36817 * 134.32006 * 180.02562 * 23 22 16 25 25 H 0.96996 * 124.98870 * 0.02562 * 24 23 22 26 26 C 1.37037 * 110.01837 * 179.97438 * 24 23 22 27 27 C 1.34395 * 109.82816 * 0.02562 * 26 24 23 28 28 C 1.40382 * 120.85690 * 83.48557 * 14 5 4 29 29 H 1.08998 * 109.47377 * 59.99963 * 1 2 3 30 30 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46736 * 299.99553 * 1 2 3 32 32 H 1.08999 * 109.46923 * 239.99849 * 2 1 3 33 33 H 1.09005 * 109.47048 * 120.00281 * 2 1 3 34 34 H 1.09000 * 109.46798 * 60.00178 * 3 2 1 35 35 H 1.08998 * 109.46991 * 300.00273 * 3 2 1 36 36 H 1.08999 * 109.47426 * 59.99736 * 4 3 2 37 37 H 1.09005 * 109.46862 * 299.99973 * 4 3 2 38 38 H 0.96991 * 119.99745 * 174.99767 * 9 8 6 39 39 H 1.09004 * 109.46980 * 59.99574 * 19 17 16 40 40 H 1.08991 * 109.47654 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47068 * 300.00614 * 19 17 16 42 42 H 1.08998 * 109.47037 * 294.99204 * 20 17 16 43 43 H 1.08991 * 109.47316 * 54.99306 * 20 17 16 44 44 H 1.08993 * 109.47534 * 299.99717 * 21 20 17 45 45 H 1.09004 * 109.47108 * 59.99890 * 21 20 17 46 46 H 1.09007 * 109.47255 * 179.97438 * 21 20 17 47 47 H 1.08001 * 125.09152 * 179.97438 * 26 24 23 48 48 H 1.08000 * 126.59589 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2861 3.4697 -1.1854 7 1 4.0110 2.9997 -2.1181 8 6 4.8706 4.7288 -1.1886 9 7 5.3269 5.2450 -0.0679 10 14 5.0092 5.6903 -2.7841 11 1 3.6526 5.9231 -3.3413 12 1 5.6662 6.9956 -2.5201 13 1 5.8188 4.9165 -3.7595 14 6 4.2892 3.4744 1.1970 15 7 3.3712 4.2822 1.7230 16 6 3.5854 4.9007 2.8690 17 6 2.5068 5.7991 3.4172 18 1 1.6551 5.8011 2.7370 19 6 2.0631 5.2854 4.7883 20 6 3.0509 7.2222 3.5574 21 6 1.9229 8.1587 3.9950 22 7 4.7018 4.7659 3.5530 23 6 5.6824 3.9837 3.1074 24 7 6.9236 3.6471 3.5743 25 1 7.3138 3.9716 4.4009 26 6 7.5340 2.7831 2.7032 27 6 6.7217 2.5368 1.6612 28 6 5.4989 3.3028 1.8883 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8892 38 1 5.7998 6.0917 -0.0811 39 1 2.9148 5.2833 5.4686 40 1 1.2833 5.9354 5.1850 41 1 1.6755 4.2715 4.6884 42 1 3.8446 7.2358 4.3044 43 1 3.4485 7.5553 2.5988 44 1 1.1292 8.1452 3.2481 45 1 1.5254 7.8255 4.9537 46 1 2.3106 9.1725 4.0953 47 1 8.5205 2.3635 2.8339 48 1 6.9323 1.8953 0.8182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167135404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:49 Heat of formation + Delta-G solvation = 83.491242 kcal Electronic energy + Delta-G solvation = -27827.804545 eV Core-core repulsion = 24304.516690 eV Total energy + Delta-G solvation = -3523.287855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63930 -38.00043 -36.76508 -35.05770 -34.08418 -31.64773 -31.12340 -30.03341 -29.44084 -28.11903 -27.31339 -24.59167 -24.55831 -23.23234 -21.68119 -21.22739 -20.42773 -19.72941 -19.41045 -18.19363 -17.10877 -15.58128 -15.27852 -14.89024 -14.63904 -14.30741 -14.28296 -14.05879 -13.57138 -13.55100 -13.32193 -13.16378 -12.56797 -12.44359 -12.35512 -12.27125 -11.99234 -11.82414 -11.42796 -11.29631 -11.22882 -11.07110 -10.81197 -10.73756 -10.65382 -10.55977 -10.37821 -10.23006 -10.17444 -10.01549 -9.87223 -9.48416 -9.24133 -8.95736 -7.87830 -7.78113 -7.20996 -6.99873 -5.76210 -3.33418 2.13623 2.79696 3.35420 3.40929 3.41570 3.57924 3.64670 4.35363 4.82962 5.06311 5.15185 5.33307 5.37683 5.39381 5.46308 5.53388 5.56554 5.58961 5.68478 5.80745 5.90704 5.91406 5.93472 5.96640 6.13501 6.17280 6.25429 6.27452 6.29858 6.30542 6.39099 6.40735 6.45459 6.46750 6.47975 6.55465 6.67067 6.82195 6.85418 6.89533 6.92527 7.09857 7.32277 7.44105 7.62724 7.86955 8.07316 8.22970 8.65949 9.16779 9.63595 9.79569 10.07658 11.18981 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007875 B = 0.006058 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.763423 B = 4621.242099 C = 5148.426158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.139 4.139 4 C 0.158 3.842 5 N -0.551 5.551 6 C -0.258 4.258 7 H 0.085 0.915 8 C 0.005 3.995 9 N -0.893 5.893 10 Si 0.920 3.080 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.593 3.407 15 N -0.559 5.559 16 C 0.357 3.643 17 C -0.012 4.012 18 H 0.086 0.914 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.149 4.149 22 N -0.569 5.569 23 C 0.309 3.691 24 N -0.585 5.585 25 H 0.406 0.594 26 C 0.002 3.998 27 C -0.140 4.140 28 C -0.179 4.179 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.162 0.838 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -4.577 7.097 8.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.033 3.967 5 N -0.269 5.269 6 C -0.386 4.386 7 H 0.103 0.897 8 C -0.194 4.194 9 N -0.537 5.537 10 Si 0.750 3.250 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.352 3.648 15 N -0.280 5.280 16 C 0.086 3.914 17 C -0.033 4.033 18 H 0.104 0.896 19 C -0.194 4.194 20 C -0.146 4.146 21 C -0.207 4.207 22 N -0.292 5.292 23 C 0.071 3.929 24 N -0.194 5.194 25 H 0.241 0.759 26 C -0.122 4.122 27 C -0.168 4.168 28 C -0.191 4.191 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.179 0.821 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.704 -3.781 7.521 8.841 hybrid contribution 1.218 0.476 -0.967 1.626 sum -1.486 -3.305 6.553 7.489 Atomic orbital electron populations 1.21751 0.96551 1.00590 1.01727 1.21492 0.95312 0.98011 1.01179 1.22218 0.98299 0.94776 1.02571 1.20858 0.91992 0.84059 0.99832 1.41192 1.75237 1.09676 1.00795 1.19250 1.36221 0.99069 0.84039 0.89699 1.24860 0.99380 0.97644 0.97485 1.69233 1.40149 1.20026 1.24320 0.86067 0.77760 0.79101 0.82044 1.20884 1.21734 1.20958 1.17066 0.84148 0.80905 0.82725 1.68251 1.35970 1.11974 1.11852 1.21968 0.89607 0.92882 0.86990 1.19778 0.94560 0.92416 0.96530 0.89554 1.21782 1.00990 1.00261 0.96333 1.21432 0.97917 0.93271 1.01981 1.21821 0.98881 0.98876 1.01096 1.66790 1.01531 1.22740 1.38164 1.18211 0.87250 0.95524 0.91888 1.41229 1.13131 1.42568 1.22444 0.75870 1.21498 0.98922 0.98927 0.92818 1.21413 0.93417 1.03491 0.98444 1.20564 0.97091 1.03966 0.97474 0.92911 0.93541 0.93014 0.92450 0.92724 0.92288 0.91826 0.92251 0.94105 0.92716 0.92018 0.92596 0.93302 0.91470 0.92046 0.92896 0.92728 0.93245 0.82089 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.12 -1.73 5.93 -26.73 -0.16 -1.89 16 3 C -0.14 -2.51 5.54 -26.73 -0.15 -2.66 16 4 C 0.16 3.17 5.65 -4.04 -0.02 3.14 16 5 N -0.55 -13.52 2.63 -114.72 -0.30 -13.82 16 6 C -0.26 -6.81 9.78 -15.07 -0.15 -6.96 16 7 H 0.09 2.14 7.84 -52.49 -0.41 1.73 16 8 C 0.00 0.14 5.40 -17.45 -0.09 0.04 16 9 N -0.89 -25.53 9.83 55.49 0.55 -24.98 16 10 Si 0.92 21.98 29.56 -169.99 -5.03 16.95 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.59 15.00 3.69 -154.72 -0.57 14.43 16 15 N -0.56 -14.16 10.06 -9.82 -0.10 -14.26 16 16 C 0.36 8.14 6.34 -157.19 -1.00 7.15 16 17 C -0.01 -0.22 2.71 -91.78 -0.25 -0.47 16 18 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 19 C -0.14 -2.09 8.84 37.16 0.33 -1.76 16 20 C -0.11 -1.84 5.25 -26.73 -0.14 -1.98 16 21 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 22 N -0.57 -12.79 9.85 -10.03 -0.10 -12.89 16 23 C 0.31 6.93 8.48 -155.84 -1.32 5.61 16 24 N -0.59 -10.51 6.03 -12.11 -0.07 -10.59 16 25 H 0.41 5.88 8.96 -40.82 -0.37 5.51 16 26 C 0.00 0.03 11.83 -16.58 -0.20 -0.16 16 27 C -0.14 -2.89 11.08 -37.80 -0.42 -3.31 16 28 C -0.18 -4.27 5.33 -104.97 -0.56 -4.82 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 1.11 8.04 -51.93 -0.42 0.70 16 37 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 38 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 39 H 0.06 0.97 7.99 -51.93 -0.42 0.56 16 40 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.16 1.98 8.06 -52.49 -0.42 1.55 16 48 H 0.14 2.70 8.06 -52.49 -0.42 2.27 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -31.56 388.92 -11.34 -42.90 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.18 Total: 7.64 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -3.97 Total: 3.19 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -0.03 Total: -76.55 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.56 -11.34 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.396 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds