Wall clock time and date at job start Tue Mar 31 2020 11:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 C 1.53002 * 109.46872 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46774 * 180.02562 * 4 3 2 6 6 C 1.36911 * 119.99907 * 269.99676 * 5 4 3 7 7 H 1.08001 * 119.99666 * 6.27279 * 6 5 4 8 8 C 1.38826 * 120.00157 * 186.27549 * 6 5 4 9 9 N 1.31552 * 119.99951 * 6.76248 * 8 6 5 10 10 Si 1.86797 * 120.00065 * 186.77034 * 8 6 5 11 11 H 1.48494 * 109.47500 * 59.99333 * 10 8 6 12 12 H 1.48500 * 109.47179 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46660 * 299.99556 * 10 8 6 14 14 C 1.38197 * 120.00465 * 89.99975 * 5 4 3 15 15 N 1.33108 * 120.85334 * 263.36080 * 14 5 4 16 16 C 1.31979 * 121.03725 * 179.68480 * 15 14 5 17 17 C 1.50693 * 118.63061 * 180.21085 * 16 15 14 18 18 H 1.09004 * 109.47168 * 0.02562 * 17 16 15 19 19 C 1.52997 * 109.47869 * 120.01729 * 17 16 15 20 20 C 1.53002 * 109.47075 * 240.02167 * 17 16 15 21 21 C 1.52997 * 109.47080 * 174.99639 * 20 17 16 22 22 N 1.31624 * 122.74600 * 0.22446 * 16 15 14 23 23 C 1.33114 * 120.73300 * 0.02562 * 22 16 15 24 24 N 1.36817 * 134.32006 * 180.02562 * 23 22 16 25 25 H 0.96996 * 124.98870 * 0.02562 * 24 23 22 26 26 C 1.37037 * 110.01837 * 179.97438 * 24 23 22 27 27 C 1.34395 * 109.82816 * 0.02562 * 26 24 23 28 28 C 1.40382 * 120.85690 * 83.48557 * 14 5 4 29 29 H 1.08998 * 109.47377 * 59.99963 * 1 2 3 30 30 H 1.08999 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46736 * 299.99553 * 1 2 3 32 32 H 1.08999 * 109.46923 * 239.99849 * 2 1 3 33 33 H 1.09005 * 109.47048 * 120.00281 * 2 1 3 34 34 H 1.09000 * 109.46798 * 60.00178 * 3 2 1 35 35 H 1.08998 * 109.46991 * 300.00273 * 3 2 1 36 36 H 1.08999 * 109.47426 * 59.99736 * 4 3 2 37 37 H 1.09005 * 109.46862 * 299.99973 * 4 3 2 38 38 H 0.96991 * 119.99745 * 174.99767 * 9 8 6 39 39 H 1.09004 * 109.46980 * 59.99574 * 19 17 16 40 40 H 1.08991 * 109.47654 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47068 * 300.00614 * 19 17 16 42 42 H 1.08998 * 109.47037 * 294.99204 * 20 17 16 43 43 H 1.08991 * 109.47316 * 54.99306 * 20 17 16 44 44 H 1.08993 * 109.47534 * 299.99717 * 21 20 17 45 45 H 1.09004 * 109.47108 * 59.99890 * 21 20 17 46 46 H 1.09007 * 109.47255 * 179.97438 * 21 20 17 47 47 H 1.08001 * 125.09152 * 179.97438 * 26 24 23 48 48 H 1.08000 * 126.59589 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.2861 3.4697 -1.1854 7 1 4.0110 2.9997 -2.1181 8 6 4.8706 4.7288 -1.1886 9 7 5.3269 5.2450 -0.0679 10 14 5.0092 5.6903 -2.7841 11 1 3.6526 5.9231 -3.3413 12 1 5.6662 6.9956 -2.5201 13 1 5.8188 4.9165 -3.7595 14 6 4.2892 3.4744 1.1970 15 7 3.3712 4.2822 1.7230 16 6 3.5854 4.9007 2.8690 17 6 2.5068 5.7991 3.4172 18 1 1.6551 5.8011 2.7370 19 6 2.0631 5.2854 4.7883 20 6 3.0509 7.2222 3.5574 21 6 1.9229 8.1587 3.9950 22 7 4.7018 4.7659 3.5530 23 6 5.6824 3.9837 3.1074 24 7 6.9236 3.6471 3.5743 25 1 7.3138 3.9716 4.4009 26 6 7.5340 2.7831 2.7032 27 6 6.7217 2.5368 1.6612 28 6 5.4989 3.3028 1.8883 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9284 0.8892 38 1 5.7998 6.0917 -0.0811 39 1 2.9148 5.2833 5.4686 40 1 1.2833 5.9354 5.1850 41 1 1.6755 4.2715 4.6884 42 1 3.8446 7.2358 4.3044 43 1 3.4485 7.5553 2.5988 44 1 1.1292 8.1452 3.2481 45 1 1.5254 7.8255 4.9537 46 1 2.3106 9.1725 4.0953 47 1 8.5205 2.3635 2.8339 48 1 6.9323 1.8953 0.8182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167135404.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:48 Heat of formation + Delta-G solvation = 67.315776 kcal Electronic energy + Delta-G solvation = -27828.505966 eV Core-core repulsion = 24304.516690 eV Total energy + Delta-G solvation = -3523.989276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.27049 -39.60790 -38.43056 -36.47942 -35.57221 -33.53069 -32.82553 -31.58253 -30.83209 -29.58818 -28.89129 -26.47089 -25.92560 -24.73114 -23.18562 -22.85105 -21.81573 -21.30630 -20.94946 -19.89827 -18.86711 -17.24547 -16.97558 -16.47739 -16.18197 -15.91249 -15.70978 -15.63260 -15.32987 -15.13015 -14.64732 -14.53821 -14.07827 -13.81100 -13.77019 -13.74921 -13.36524 -13.08026 -13.02025 -12.88931 -12.83153 -12.53050 -12.39285 -12.36880 -12.13798 -12.03183 -11.92965 -11.74375 -11.62408 -11.54862 -11.35760 -11.17919 -10.96067 -10.86010 -9.69494 -9.46435 -9.04945 -8.67899 -7.74984 -5.37702 0.47766 1.03803 1.41943 1.46220 1.50265 2.04370 2.12446 2.43079 3.09936 3.35842 3.46765 3.58567 3.94253 4.11398 4.15804 4.19123 4.23102 4.29670 4.36012 4.39401 4.49913 4.56239 4.65566 4.71736 4.76122 4.79184 4.86546 4.93518 5.01011 5.01997 5.03805 5.09904 5.13706 5.15541 5.18509 5.22445 5.26410 5.39138 5.46335 5.49775 5.52769 5.54002 5.59783 5.71975 5.83861 6.10041 6.33382 6.54763 7.02404 7.15888 7.77899 8.01121 8.11000 9.10937 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.007875 B = 0.006058 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.763423 B = 4621.242099 C = 5148.426158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.155 3.845 5 N -0.565 5.565 6 C -0.258 4.258 7 H 0.091 0.909 8 C -0.048 4.048 9 N -0.912 5.912 10 Si 0.977 3.023 11 H -0.283 1.283 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.568 3.432 15 N -0.590 5.590 16 C 0.336 3.664 17 C -0.013 4.013 18 H 0.075 0.925 19 C -0.123 4.123 20 C -0.098 4.098 21 C -0.141 4.141 22 N -0.566 5.566 23 C 0.283 3.717 24 N -0.570 5.570 25 H 0.425 0.575 26 C 0.048 3.952 27 C -0.186 4.186 28 C -0.203 4.203 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.243 0.757 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.221 0.779 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 -5.489 8.192 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.164 4.164 4 C 0.031 3.969 5 N -0.283 5.283 6 C -0.387 4.387 7 H 0.109 0.891 8 C -0.243 4.243 9 N -0.558 5.558 10 Si 0.806 3.194 11 H -0.210 1.210 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.328 3.672 15 N -0.312 5.312 16 C 0.065 3.935 17 C -0.034 4.034 18 H 0.093 0.907 19 C -0.181 4.181 20 C -0.137 4.137 21 C -0.198 4.198 22 N -0.289 5.289 23 C 0.044 3.956 24 N -0.180 5.180 25 H 0.264 0.736 26 C -0.076 4.076 27 C -0.213 4.213 28 C -0.215 4.215 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.237 0.763 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.328 -4.726 8.639 10.119 hybrid contribution 1.165 0.676 -1.267 1.849 sum -1.163 -4.050 7.372 8.492 Atomic orbital electron populations 1.21730 0.95220 1.02080 1.01356 1.21438 0.96434 0.95039 1.02294 1.22026 0.96905 0.97198 1.00317 1.21047 0.93031 0.82426 1.00422 1.41406 1.75675 1.10936 1.00320 1.19556 1.34903 0.99069 0.85128 0.89096 1.25558 1.00127 0.98682 0.99964 1.69544 1.41169 1.19310 1.25732 0.85169 0.77469 0.77355 0.79409 1.20963 1.23053 1.19480 1.17354 0.84940 0.81606 0.83326 1.68213 1.36966 1.12830 1.13187 1.22720 0.90800 0.93313 0.86716 1.19913 0.93027 0.92574 0.97857 0.90709 1.21694 1.01699 1.00499 0.94168 1.21337 0.99193 0.93265 0.99901 1.21766 0.97362 0.98573 1.02079 1.66873 1.01574 1.22561 1.37922 1.18586 0.88764 0.95928 0.92298 1.41303 1.11585 1.41955 1.23173 0.73565 1.22308 0.99641 0.95526 0.90160 1.21556 0.93593 1.05540 1.00631 1.20881 0.97670 1.04836 0.98105 0.93123 0.91067 0.93635 0.90981 0.91886 0.94903 0.93612 0.91090 0.93800 0.94618 0.92307 0.89251 0.93952 0.91838 0.95809 0.92774 0.90429 0.91886 0.76293 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.12 -4.62 5.54 30.60 0.17 -4.45 16 4 C 0.16 6.35 5.65 86.38 0.49 6.84 16 5 N -0.56 -28.67 2.63 -516.86 -1.36 -30.03 16 6 C -0.26 -14.00 9.78 84.04 0.82 -13.17 16 7 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 8 C -0.05 -2.68 5.40 84.88 0.46 -2.22 16 9 N -0.91 -54.18 9.83 21.65 0.21 -53.97 16 10 Si 0.98 46.40 29.56 68.60 2.03 48.43 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.57 29.90 3.69 133.43 0.49 30.39 16 15 N -0.59 -31.38 10.06 -185.00 -1.86 -33.24 16 16 C 0.34 15.91 6.34 138.74 0.88 16.79 16 17 C -0.01 -0.49 2.71 -11.54 -0.03 -0.52 16 18 H 0.07 2.95 8.09 -2.38 -0.02 2.93 16 19 C -0.12 -3.67 8.84 71.98 0.64 -3.04 16 20 C -0.10 -3.42 5.25 30.59 0.16 -3.26 16 21 C -0.14 -3.55 9.67 71.98 0.70 -2.86 16 22 N -0.57 -25.98 9.85 -185.65 -1.83 -27.81 16 23 C 0.28 12.75 8.48 134.00 1.14 13.89 16 24 N -0.57 -19.39 6.03 -192.22 -1.16 -20.55 16 25 H 0.43 11.16 8.96 -92.71 -0.83 10.33 16 26 C 0.05 1.49 11.83 83.00 0.98 2.47 16 27 C -0.19 -7.60 11.08 23.42 0.26 -7.34 16 28 C -0.20 -9.88 5.33 -20.09 -0.11 -9.98 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 37 H 0.04 1.74 8.04 -2.38 -0.02 1.72 16 38 H 0.24 14.75 8.32 -92.72 -0.77 13.98 16 39 H 0.06 1.79 7.99 -2.38 -0.02 1.77 16 40 H 0.09 2.05 6.56 -2.39 -0.02 2.03 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.06 2.21 8.11 -2.39 -0.02 2.19 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.61 6.56 -2.38 -0.02 1.60 16 46 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.22 4.17 8.06 -2.91 -0.02 4.14 16 48 H 0.14 5.41 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -73.05 388.92 4.08 -68.98 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.11 Total: 30.44 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 7.94 Total: 17.76 kcal Atomic # 7 Polarization: -159.61 SS G_CDS: -6.00 Total: -165.61 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -73.05 4.08 -68.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167135404.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.292 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds