Wall clock time and date at job start Tue Mar 31 2020 12:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36360 * 120.08352 * 2 1 4 4 C 1.39541 * 120.16238 * 180.27866 * 3 2 1 5 5 N 1.38853 * 119.84423 * 179.70886 * 4 3 2 6 6 C 1.44831 * 112.21474 * 251.93941 * 5 4 3 7 7 C 1.53342 * 111.19825 * 308.08929 * 6 5 4 8 8 C 1.54549 * 108.10592 * 65.44121 * 6 5 4 9 9 C 1.52646 * 113.14684 * 184.34502 * 6 5 4 10 10 C 1.52840 * 110.54460 * 48.51735 * 9 6 5 11 11 N 1.47215 * 109.24844 * 181.39026 * 10 9 6 12 12 C 1.52987 * 108.34980 * 300.23068 * 10 9 6 13 13 C 1.44958 * 112.13366 * 113.34228 * 5 4 3 14 14 C 1.54455 * 108.18337 * 295.64533 * 13 5 4 15 15 C 1.53163 * 111.44676 * 53.42715 * 13 5 4 16 16 C 1.39590 * 120.31493 * 359.69042 * 4 3 2 17 17 C 1.36318 * 120.16136 * 0.02562 * 16 4 3 18 18 C 1.40868 * 120.08054 * 179.71310 * 2 1 3 19 19 C 1.41135 * 120.15570 * 0.02562 * 18 2 1 20 20 H 1.07997 * 120.00186 * 333.52768 * 19 18 2 21 21 C 1.39870 * 119.99892 * 153.53026 * 19 18 2 22 22 N 1.30899 * 119.99876 * 334.12713 * 21 19 18 23 23 Si 1.86797 * 119.99953 * 154.12330 * 21 19 18 24 24 H 1.48494 * 109.47300 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47434 * 300.00317 * 23 21 19 26 26 H 1.48503 * 109.47104 * 59.99837 * 23 21 19 27 27 H 1.09000 * 109.47238 * 270.28345 * 1 2 3 28 28 H 1.09001 * 109.47039 * 30.28307 * 1 2 3 29 29 H 1.08998 * 109.47007 * 150.28738 * 1 2 3 30 30 H 1.08002 * 119.91715 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.47639 * 59.99996 * 7 6 5 32 32 H 1.09007 * 109.47159 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47220 * 299.99212 * 7 6 5 34 34 H 1.08994 * 109.47080 * 64.19936 * 8 6 5 35 35 H 1.09002 * 109.46449 * 184.19375 * 8 6 5 36 36 H 1.08997 * 109.47123 * 304.18993 * 8 6 5 37 37 H 1.09260 * 109.42119 * 288.04190 * 9 6 5 38 38 H 1.09264 * 109.41873 * 168.99347 * 9 6 5 39 39 H 1.08618 * 110.49751 * 61.45499 * 10 9 6 40 40 H 1.00907 * 111.00096 * 298.32346 * 11 10 9 41 41 H 1.00901 * 111.00061 * 62.27748 * 11 10 9 42 42 H 1.09130 * 109.42665 * 300.94595 * 12 10 9 43 43 H 1.09138 * 109.41591 * 181.45480 * 12 10 9 44 44 H 1.08994 * 109.47360 * 65.32335 * 14 13 5 45 45 H 1.09000 * 109.46693 * 185.32551 * 14 13 5 46 46 H 1.08999 * 109.47137 * 305.32240 * 14 13 5 47 47 H 1.09000 * 109.47104 * 52.59909 * 15 13 5 48 48 H 1.09004 * 109.47234 * 172.59283 * 15 13 5 49 49 H 1.09001 * 109.47504 * 292.59382 * 15 13 5 50 50 H 1.08006 * 119.91821 * 179.97438 * 16 4 3 51 51 H 1.08004 * 120.08188 * 180.02562 * 17 16 4 52 52 H 0.96996 * 120.00295 * 354.03521 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0059 5 7 4.2752 2.3872 -0.0120 6 6 4.9025 2.6528 -1.2900 7 6 5.7559 1.4634 -1.7467 8 6 3.7868 2.8436 -2.3423 9 6 5.7532 3.9202 -1.2891 10 6 6.6860 3.9392 -0.0784 11 7 7.4677 5.1866 -0.0875 12 6 5.8309 3.8912 1.1892 13 6 5.0134 2.6004 1.2173 14 6 3.9978 2.7185 2.3750 15 6 5.9298 1.4146 1.5331 16 6 4.2922 -0.0222 -0.0053 17 6 3.6221 -1.2093 0.0005 18 6 2.2130 -1.2189 0.0061 19 6 1.5124 -2.4441 0.0117 20 1 0.5174 -2.4953 0.4285 21 6 2.1067 -3.5920 -0.5225 22 7 3.0285 -3.4827 -1.4455 23 14 1.5852 -5.2810 0.0812 24 1 2.3600 -6.3245 -0.6370 25 1 1.8454 -5.3877 1.5394 26 1 0.1357 -5.4736 -0.1782 27 1 -0.3634 0.0051 1.0276 28 1 -0.3633 0.8874 -0.5182 29 1 -0.3633 -0.8925 -0.5094 30 1 1.6505 2.1152 -0.0004 31 1 5.1249 0.5803 -1.8460 32 1 6.2134 1.6927 -2.7092 33 1 6.5359 1.2717 -1.0098 34 1 3.1996 3.7274 -2.0930 35 1 4.2348 2.9711 -3.3278 36 1 3.1392 1.9669 -2.3483 37 1 5.1005 4.7958 -1.2568 38 1 6.3480 3.9592 -2.2048 39 1 7.3677 3.0941 -0.1102 40 1 8.0432 5.2467 -0.9142 41 1 6.8647 5.9917 -0.0074 42 1 5.1569 4.7494 1.2051 43 1 6.4795 3.9301 2.0661 44 1 3.4810 1.7675 2.5034 45 1 4.5239 2.9733 3.2950 46 1 3.2721 3.4981 2.1436 47 1 6.5549 1.1977 0.6668 48 1 6.5630 1.6615 2.3852 49 1 5.3239 0.5405 1.7719 50 1 5.3722 -0.0132 -0.0102 51 1 4.1698 -2.1401 0.0014 52 1 3.2383 -2.6133 -1.8209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167624505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:00 Heat of formation + Delta-G solvation = 19.165003 kcal Electronic energy + Delta-G solvation = -29190.814890 eV Core-core repulsion = 25768.277983 eV Total energy + Delta-G solvation = -3422.536907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68619 -37.70749 -35.41586 -34.78083 -33.53080 -31.60093 -30.39734 -28.23831 -28.03211 -27.63679 -26.24967 -26.08449 -25.75974 -24.17189 -21.51218 -20.52429 -20.27902 -19.84678 -17.81323 -17.78455 -16.02481 -15.64248 -15.24605 -14.76518 -14.56338 -14.41720 -14.01447 -13.92875 -13.44841 -13.14637 -12.98333 -12.90873 -12.69213 -12.51661 -12.15255 -12.05847 -11.86934 -11.83671 -11.48822 -11.42362 -11.28578 -11.19644 -11.18077 -11.05425 -10.97711 -10.90004 -10.78113 -10.49062 -10.43004 -10.22607 -10.11463 -9.91809 -9.56213 -9.29111 -8.92062 -8.66851 -7.51933 -7.41611 -7.33734 -7.05815 -4.38230 2.72146 2.93799 3.14996 3.24873 3.34825 4.01410 4.27438 4.44274 4.52300 4.85891 4.94400 5.17138 5.24521 5.30372 5.47519 5.50774 5.62327 5.67637 5.72243 5.81620 5.88840 5.99037 6.05490 6.06759 6.08635 6.12731 6.19796 6.21789 6.26083 6.34451 6.35634 6.37331 6.39717 6.42450 6.62575 6.63455 6.65277 6.70713 6.72689 6.77689 6.93364 7.02560 7.07222 7.19691 7.33727 7.44652 7.47005 7.83106 7.85516 7.99839 8.16494 8.22944 8.26256 8.55080 8.84250 8.97698 10.05416 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.004132 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.753941 B = 6773.990212 C = 6891.015571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.205 4.205 3 C -0.048 4.048 4 C -0.031 4.031 5 N -0.513 5.513 6 C 0.155 3.845 7 C -0.185 4.185 8 C -0.138 4.138 9 C -0.139 4.139 10 C 0.090 3.910 11 N -0.847 5.847 12 C -0.098 4.098 13 C 0.152 3.848 14 C -0.135 4.135 15 C -0.184 4.184 16 C -0.103 4.103 17 C -0.220 4.220 18 C 0.104 3.896 19 C -0.518 4.518 20 H 0.076 0.924 21 C 0.040 3.960 22 N -0.796 5.796 23 Si 1.060 2.940 24 H -0.275 1.275 25 H -0.275 1.275 26 H -0.276 1.276 27 H 0.039 0.961 28 H 0.036 0.964 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.337 0.663 41 H 0.337 0.663 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.046 0.954 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.099 0.901 52 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.608 11.126 1.041 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.207 4.207 3 C -0.067 4.067 4 C -0.124 4.124 5 N -0.233 5.233 6 C 0.066 3.934 7 C -0.244 4.244 8 C -0.196 4.196 9 C -0.178 4.178 10 C -0.021 4.021 11 N -0.374 5.374 12 C -0.137 4.137 13 C 0.063 3.937 14 C -0.193 4.193 15 C -0.242 4.242 16 C -0.123 4.123 17 C -0.240 4.240 18 C 0.102 3.898 19 C -0.546 4.546 20 H 0.094 0.906 21 C -0.182 4.182 22 N -0.419 5.419 23 Si 0.884 3.116 24 H -0.200 1.200 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.092 0.908 50 H 0.116 0.884 51 H 0.117 0.883 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.064 9.565 1.530 10.931 hybrid contribution -0.215 1.297 -0.858 1.570 sum 4.849 10.862 0.672 11.914 Atomic orbital electron populations 1.20361 0.93653 1.00341 0.99488 1.19354 0.94295 0.92866 1.14194 1.20102 0.92480 0.95678 0.98464 1.17302 0.91303 0.85562 1.18281 1.53651 1.35833 1.34440 0.99340 1.20222 0.92269 0.92489 0.88412 1.23006 1.00395 1.01099 0.99897 1.22244 0.98508 1.02404 0.96417 1.22464 0.98351 0.98442 0.98588 1.21423 0.93510 0.92601 0.94574 1.59105 1.27515 1.04387 1.46415 1.21665 0.97269 0.97560 0.97168 1.20319 0.91597 0.92743 0.89038 1.22177 0.98626 1.02518 0.95941 1.23029 0.99955 1.00636 1.00602 1.21330 0.98052 0.93517 0.99428 1.20772 0.94448 0.96359 1.12440 1.17529 0.91466 0.92191 0.88658 1.20504 1.03687 0.94022 1.36348 0.90574 1.26942 0.92821 1.05334 0.93094 1.70474 1.23625 1.31371 1.16449 0.83700 0.76906 0.73804 0.77151 1.19967 1.20068 1.20172 0.94253 0.94505 0.92294 0.89241 0.90336 0.93678 0.93075 0.93081 0.93675 0.91579 0.91882 0.92242 0.90237 0.85129 0.85137 0.91891 0.91245 0.92024 0.93474 0.92725 0.92821 0.93501 0.90756 0.88381 0.88271 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 9.39 36.00 0.34 -1.33 16 2 C -0.21 -4.73 5.90 -104.31 -0.62 -5.34 16 3 C -0.05 -1.01 8.80 -39.77 -0.35 -1.36 16 4 C -0.03 -0.61 2.07 -83.69 -0.17 -0.78 16 5 N -0.51 -8.52 3.33 -142.62 -0.48 -9.00 16 6 C 0.16 2.37 0.68 -131.90 -0.09 2.28 16 7 C -0.19 -2.97 6.58 37.33 0.25 -2.73 16 8 C -0.14 -2.15 8.18 37.97 0.31 -1.84 16 9 C -0.14 -1.74 4.23 -26.99 -0.11 -1.85 16 10 C 0.09 1.10 3.12 -67.63 -0.21 0.89 16 11 N -0.85 -8.67 9.25 -4.68 -0.04 -8.71 16 12 C -0.10 -1.29 4.19 -26.83 -0.11 -1.40 16 13 C 0.15 2.32 0.65 -131.89 -0.09 2.23 16 14 C -0.13 -2.08 8.08 37.92 0.31 -1.77 16 15 C -0.18 -2.91 6.44 37.24 0.24 -2.67 16 16 C -0.10 -2.20 4.59 -39.77 -0.18 -2.38 16 17 C -0.22 -5.36 7.91 -39.26 -0.31 -5.67 16 18 C 0.10 2.62 5.28 -106.79 -0.56 2.06 16 19 C -0.52 -13.24 8.02 -37.87 -0.30 -13.55 16 20 H 0.08 1.91 6.96 -52.49 -0.37 1.55 16 21 C 0.04 0.99 4.91 -17.34 -0.09 0.91 16 22 N -0.80 -20.74 12.34 55.54 0.69 -20.06 16 23 Si 1.06 21.34 30.00 -169.99 -5.10 16.24 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.06 1.25 6.78 -51.93 -0.35 0.90 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.08 1.49 5.52 -51.93 -0.29 1.20 16 32 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 33 H 0.05 0.81 4.50 -51.93 -0.23 0.57 16 34 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.21 6.70 -51.93 -0.35 0.86 16 37 H 0.06 0.78 8.01 -51.78 -0.41 0.37 16 38 H 0.06 0.69 7.99 -51.78 -0.41 0.28 16 39 H 0.08 1.08 6.57 -52.14 -0.34 0.73 16 40 H 0.34 2.97 9.05 -39.29 -0.36 2.62 16 41 H 0.34 3.09 8.97 -39.29 -0.35 2.74 16 42 H 0.06 0.81 8.09 -51.86 -0.42 0.40 16 43 H 0.07 0.89 7.95 -51.85 -0.41 0.48 16 44 H 0.06 1.10 7.37 -51.93 -0.38 0.72 16 45 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.85 4.08 -51.93 -0.21 0.64 16 48 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 49 H 0.07 1.35 5.70 -51.93 -0.30 1.06 16 50 H 0.10 1.97 3.98 -52.48 -0.21 1.77 16 51 H 0.10 2.56 6.56 -52.48 -0.34 2.22 16 52 H 0.30 8.00 6.77 -40.82 -0.28 7.72 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -25.11 369.59 -9.72 -34.83 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -8.60 Total: 15.44 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: -1.76 Total: -34.32 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.17 Total: -37.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.10 Total: 16.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -25.11 -9.72 -34.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167624505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.992 kcal (2) G-P(sol) polarization free energy of solvation -25.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds