Wall clock time and date at job start Tue Mar 31 2020 12:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36360 * 120.08352 * 2 1 4 4 C 1.39541 * 120.16238 * 180.27866 * 3 2 1 5 5 N 1.38853 * 119.84423 * 179.70886 * 4 3 2 6 6 C 1.44831 * 112.21474 * 251.93941 * 5 4 3 7 7 C 1.53342 * 111.19825 * 308.08929 * 6 5 4 8 8 C 1.54549 * 108.10592 * 65.44121 * 6 5 4 9 9 C 1.52646 * 113.14684 * 184.34502 * 6 5 4 10 10 C 1.52840 * 110.54460 * 48.51735 * 9 6 5 11 11 N 1.47215 * 109.24844 * 181.39026 * 10 9 6 12 12 C 1.52987 * 108.34980 * 300.23068 * 10 9 6 13 13 C 1.44958 * 112.13366 * 113.34228 * 5 4 3 14 14 C 1.54455 * 108.18337 * 295.64533 * 13 5 4 15 15 C 1.53163 * 111.44676 * 53.42715 * 13 5 4 16 16 C 1.39590 * 120.31493 * 359.69042 * 4 3 2 17 17 C 1.36318 * 120.16136 * 0.02562 * 16 4 3 18 18 C 1.40868 * 120.08054 * 179.71310 * 2 1 3 19 19 C 1.41135 * 120.15570 * 0.02562 * 18 2 1 20 20 H 1.07997 * 120.00186 * 333.52768 * 19 18 2 21 21 C 1.39870 * 119.99892 * 153.53026 * 19 18 2 22 22 N 1.30899 * 119.99876 * 334.12713 * 21 19 18 23 23 Si 1.86797 * 119.99953 * 154.12330 * 21 19 18 24 24 H 1.48494 * 109.47300 * 180.02562 * 23 21 19 25 25 H 1.48501 * 109.47434 * 300.00317 * 23 21 19 26 26 H 1.48503 * 109.47104 * 59.99837 * 23 21 19 27 27 H 1.09000 * 109.47238 * 270.28345 * 1 2 3 28 28 H 1.09001 * 109.47039 * 30.28307 * 1 2 3 29 29 H 1.08998 * 109.47007 * 150.28738 * 1 2 3 30 30 H 1.08002 * 119.91715 * 359.97438 * 3 2 1 31 31 H 1.08993 * 109.47639 * 59.99996 * 7 6 5 32 32 H 1.09007 * 109.47159 * 179.97438 * 7 6 5 33 33 H 1.09001 * 109.47220 * 299.99212 * 7 6 5 34 34 H 1.08994 * 109.47080 * 64.19936 * 8 6 5 35 35 H 1.09002 * 109.46449 * 184.19375 * 8 6 5 36 36 H 1.08997 * 109.47123 * 304.18993 * 8 6 5 37 37 H 1.09260 * 109.42119 * 288.04190 * 9 6 5 38 38 H 1.09264 * 109.41873 * 168.99347 * 9 6 5 39 39 H 1.08618 * 110.49751 * 61.45499 * 10 9 6 40 40 H 1.00907 * 111.00096 * 298.32346 * 11 10 9 41 41 H 1.00901 * 111.00061 * 62.27748 * 11 10 9 42 42 H 1.09130 * 109.42665 * 300.94595 * 12 10 9 43 43 H 1.09138 * 109.41591 * 181.45480 * 12 10 9 44 44 H 1.08994 * 109.47360 * 65.32335 * 14 13 5 45 45 H 1.09000 * 109.46693 * 185.32551 * 14 13 5 46 46 H 1.08999 * 109.47137 * 305.32240 * 14 13 5 47 47 H 1.09000 * 109.47104 * 52.59909 * 15 13 5 48 48 H 1.09004 * 109.47234 * 172.59283 * 15 13 5 49 49 H 1.09001 * 109.47504 * 292.59382 * 15 13 5 50 50 H 1.08006 * 119.91821 * 179.97438 * 16 4 3 51 51 H 1.08004 * 120.08188 * 180.02562 * 17 16 4 52 52 H 0.96996 * 120.00295 * 354.03521 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1799 0.0000 4 6 3.5859 1.1818 -0.0059 5 7 4.2752 2.3872 -0.0120 6 6 4.9025 2.6528 -1.2900 7 6 5.7559 1.4634 -1.7467 8 6 3.7868 2.8436 -2.3423 9 6 5.7532 3.9202 -1.2891 10 6 6.6860 3.9392 -0.0784 11 7 7.4677 5.1866 -0.0875 12 6 5.8309 3.8912 1.1892 13 6 5.0134 2.6004 1.2173 14 6 3.9978 2.7185 2.3750 15 6 5.9298 1.4146 1.5331 16 6 4.2922 -0.0222 -0.0053 17 6 3.6221 -1.2093 0.0005 18 6 2.2130 -1.2189 0.0061 19 6 1.5124 -2.4441 0.0117 20 1 0.5174 -2.4953 0.4285 21 6 2.1067 -3.5920 -0.5225 22 7 3.0285 -3.4827 -1.4455 23 14 1.5852 -5.2810 0.0812 24 1 2.3600 -6.3245 -0.6370 25 1 1.8454 -5.3877 1.5394 26 1 0.1357 -5.4736 -0.1782 27 1 -0.3634 0.0051 1.0276 28 1 -0.3633 0.8874 -0.5182 29 1 -0.3633 -0.8925 -0.5094 30 1 1.6505 2.1152 -0.0004 31 1 5.1249 0.5803 -1.8460 32 1 6.2134 1.6927 -2.7092 33 1 6.5359 1.2717 -1.0098 34 1 3.1996 3.7274 -2.0930 35 1 4.2348 2.9711 -3.3278 36 1 3.1392 1.9669 -2.3483 37 1 5.1005 4.7958 -1.2568 38 1 6.3480 3.9592 -2.2048 39 1 7.3677 3.0941 -0.1102 40 1 8.0432 5.2467 -0.9142 41 1 6.8647 5.9917 -0.0074 42 1 5.1569 4.7494 1.2051 43 1 6.4795 3.9301 2.0661 44 1 3.4810 1.7675 2.5034 45 1 4.5239 2.9733 3.2950 46 1 3.2721 3.4981 2.1436 47 1 6.5549 1.1977 0.6668 48 1 6.5630 1.6615 2.3852 49 1 5.3239 0.5405 1.7719 50 1 5.3722 -0.0132 -0.0102 51 1 4.1698 -2.1401 0.0014 52 1 3.2383 -2.6133 -1.8209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167624505.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:59 Heat of formation + Delta-G solvation = 6.124559 kcal Electronic energy + Delta-G solvation = -29191.380366 eV Core-core repulsion = 25768.277983 eV Total energy + Delta-G solvation = -3423.102383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06120 -39.34804 -36.69438 -36.03052 -35.22580 -33.23015 -31.92063 -29.76785 -29.37234 -28.93241 -27.54536 -27.45564 -27.18069 -25.91153 -22.94349 -22.09123 -21.55730 -21.42845 -19.64091 -19.05734 -17.18410 -16.92022 -16.55116 -16.48513 -16.21864 -15.67819 -15.49602 -15.09944 -14.66771 -14.58748 -14.35155 -14.31849 -14.21321 -14.11468 -13.70939 -13.56540 -13.39368 -13.12283 -13.07011 -12.84808 -12.67034 -12.59468 -12.51613 -12.43970 -12.41642 -12.24090 -12.15869 -12.00226 -11.74208 -11.58205 -11.50795 -11.40701 -11.12546 -10.94860 -10.74874 -9.53793 -9.34939 -9.21557 -8.95289 -8.80730 -6.31424 0.94629 1.09713 1.48901 1.62817 1.76797 2.33630 2.70333 2.92954 3.51457 3.57528 3.78390 3.85994 4.03940 4.06873 4.13234 4.30344 4.38631 4.41476 4.46201 4.46571 4.60452 4.66254 4.67730 4.70567 4.76526 4.83221 4.83250 4.91696 4.94684 4.97404 5.00855 5.04548 5.08586 5.10906 5.13619 5.18078 5.22374 5.26785 5.34722 5.39275 5.40845 5.45118 5.50076 5.56946 5.69919 5.87952 6.01551 6.18962 6.25123 6.37362 6.44459 6.64741 6.76787 6.83775 6.99677 7.21538 8.09878 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020377 B = 0.004132 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.753941 B = 6773.990212 C = 6891.015571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.216 4.216 3 C -0.056 4.056 4 C 0.006 3.994 5 N -0.513 5.513 6 C 0.151 3.849 7 C -0.181 4.181 8 C -0.135 4.135 9 C -0.130 4.130 10 C 0.098 3.902 11 N -0.844 5.844 12 C -0.091 4.091 13 C 0.148 3.852 14 C -0.131 4.131 15 C -0.179 4.179 16 C -0.100 4.100 17 C -0.239 4.239 18 C 0.076 3.924 19 C -0.552 4.552 20 H 0.072 0.928 21 C 0.004 3.996 22 N -0.823 5.823 23 Si 1.110 2.890 24 H -0.275 1.275 25 H -0.267 1.267 26 H -0.257 1.257 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.348 0.652 41 H 0.346 0.654 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.043 0.957 50 H 0.108 0.892 51 H 0.073 0.927 52 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.503 14.118 1.434 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.218 4.218 3 C -0.075 4.075 4 C -0.089 4.089 5 N -0.233 5.233 6 C 0.062 3.938 7 C -0.240 4.240 8 C -0.192 4.192 9 C -0.169 4.169 10 C -0.014 4.014 11 N -0.373 5.373 12 C -0.129 4.129 13 C 0.060 3.940 14 C -0.189 4.189 15 C -0.238 4.238 16 C -0.120 4.120 17 C -0.259 4.259 18 C 0.073 3.927 19 C -0.580 4.580 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.447 5.447 23 Si 0.928 3.072 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.182 1.182 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.062 0.938 50 H 0.126 0.874 51 H 0.092 0.908 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.959 12.593 1.922 14.064 hybrid contribution -0.394 0.623 -0.963 1.213 sum 5.565 13.217 0.959 14.372 Atomic orbital electron populations 1.20326 0.91974 1.00728 1.00251 1.19753 0.95886 0.92788 1.13384 1.20318 0.93146 0.95693 0.98379 1.17395 0.91212 0.86387 1.13865 1.53778 1.36599 1.32080 1.00817 1.20357 0.92484 0.93713 0.87208 1.22935 0.99955 0.99958 1.01124 1.22218 0.98247 1.01073 0.97709 1.22406 0.98169 0.96646 0.99719 1.21244 0.93133 0.93292 0.93757 1.59032 1.27324 1.03821 1.47168 1.21577 0.97224 0.95955 0.98126 1.20442 0.91667 0.93924 0.88007 1.22151 0.98757 1.00849 0.97147 1.22951 0.99836 0.99683 1.01326 1.21454 0.98537 0.93219 0.98754 1.20698 0.94569 0.96431 1.14191 1.17815 0.91942 0.93180 0.89757 1.20625 1.04027 0.95107 1.38270 0.90989 1.28235 0.92088 1.08624 0.92171 1.70588 1.25819 1.30042 1.18244 0.83095 0.77524 0.69680 0.76927 1.19937 1.19213 1.18168 0.93211 0.92232 0.93666 0.87611 0.93992 0.91766 0.92949 0.92159 0.91805 0.95077 0.90899 0.90574 0.91410 0.83925 0.84088 0.91000 0.90430 0.95208 0.91255 0.92327 0.93039 0.91521 0.93837 0.87441 0.90835 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.14 9.39 71.24 0.67 -2.47 16 2 C -0.22 -10.23 5.90 -19.66 -0.12 -10.34 16 3 C -0.06 -2.38 8.80 22.15 0.19 -2.19 16 4 C 0.01 0.22 2.07 38.67 0.08 0.30 16 5 N -0.51 -16.25 3.33 -605.13 -2.02 -18.26 16 6 C 0.15 4.28 0.68 4.44 0.00 4.29 16 7 C -0.18 -5.62 6.58 72.10 0.47 -5.15 16 8 C -0.13 -3.95 8.18 72.51 0.59 -3.35 16 9 C -0.13 -2.74 4.23 30.42 0.13 -2.62 16 10 C 0.10 2.00 3.12 44.80 0.14 2.14 16 11 N -0.84 -13.66 9.25 -168.73 -1.56 -15.22 16 12 C -0.09 -2.03 4.19 30.53 0.13 -1.90 16 13 C 0.15 4.20 0.65 4.38 0.00 4.21 16 14 C -0.13 -3.80 8.08 72.48 0.59 -3.21 16 15 C -0.18 -5.47 6.44 72.04 0.46 -5.01 16 16 C -0.10 -4.41 4.59 22.15 0.10 -4.31 16 17 C -0.24 -12.39 7.91 22.48 0.18 -12.22 16 18 C 0.08 4.00 5.28 -21.27 -0.11 3.89 16 19 C -0.55 -29.78 8.02 23.38 0.19 -29.60 16 20 H 0.07 3.80 6.96 -2.91 -0.02 3.78 16 21 C 0.00 0.23 4.91 85.23 0.42 0.64 16 22 N -0.82 -45.59 12.34 21.82 0.27 -45.32 16 23 Si 1.11 44.48 30.00 68.60 2.06 46.54 16 24 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 27 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.06 2.13 8.08 -2.39 -0.02 2.12 16 29 H 0.04 1.97 6.78 -2.39 -0.02 1.95 16 30 H 0.11 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.04 1.61 5.52 -2.39 -0.01 1.60 16 32 H 0.06 1.73 8.05 -2.38 -0.02 1.71 16 33 H 0.05 1.60 4.50 -2.39 -0.01 1.59 16 34 H 0.06 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.11 6.70 -2.39 -0.02 1.10 16 37 H 0.07 1.46 8.01 -2.25 -0.02 1.44 16 38 H 0.08 1.42 7.99 -2.25 -0.02 1.40 16 39 H 0.07 1.60 6.57 -2.59 -0.02 1.58 16 40 H 0.35 4.64 9.05 -89.69 -0.81 3.83 16 41 H 0.35 4.74 8.97 -89.69 -0.80 3.94 16 42 H 0.07 1.53 8.09 -2.32 -0.02 1.51 16 43 H 0.08 1.67 7.95 -2.31 -0.02 1.65 16 44 H 0.03 1.03 7.37 -2.39 -0.02 1.02 16 45 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 1.58 4.08 -2.39 -0.01 1.57 16 48 H 0.07 1.76 7.95 -2.39 -0.02 1.74 16 49 H 0.04 1.59 5.70 -2.39 -0.01 1.58 16 50 H 0.11 4.49 3.98 -2.91 -0.01 4.48 16 51 H 0.07 4.13 6.56 -2.91 -0.02 4.11 16 52 H 0.28 16.23 6.77 -92.71 -0.63 15.60 16 Total: -1.00 -58.13 369.59 2.33 -55.80 By element: Atomic # 1 Polarization: 43.90 SS G_CDS: -0.54 Total: 43.36 kcal Atomic # 6 Polarization: -71.01 SS G_CDS: 4.12 Total: -66.89 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.31 Total: -78.80 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.06 Total: 46.54 kcal Total: -58.13 2.33 -55.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167624505.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.924 kcal (2) G-P(sol) polarization free energy of solvation -58.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds