Wall clock time and date at job start Tue Mar 31 2020 12:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36363 * 120.08201 * 2 1 4 4 C 1.39545 * 120.16612 * 180.27400 * 3 2 1 5 5 N 1.38852 * 119.84297 * 179.71265 * 4 3 2 6 6 C 1.46505 * 119.99618 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.46960 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47052 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.47118 * 180.02562 * 8 7 6 10 10 C 1.46837 * 110.99883 * 45.79121 * 9 8 7 11 11 C 1.53032 * 109.52615 * 185.83959 * 10 9 8 12 12 C 1.53120 * 109.27792 * 300.82697 * 11 10 9 13 13 C 1.53114 * 109.16399 * 57.64989 * 12 11 10 14 14 C 1.46842 * 111.00078 * 170.00344 * 9 8 7 15 15 H 1.09000 * 109.46540 * 294.17137 * 14 9 8 16 16 C 1.53009 * 109.46438 * 54.14248 * 14 9 8 17 17 C 1.39586 * 120.30955 * 359.69128 * 4 3 2 18 18 C 1.36322 * 120.16489 * 0.02562 * 17 4 3 19 19 C 1.40864 * 120.08688 * 179.71021 * 2 1 3 20 20 C 1.41145 * 120.15253 * 0.02880 * 19 2 1 21 21 H 1.08001 * 119.99901 * 334.16841 * 20 19 2 22 22 C 1.39863 * 119.99591 * 154.16847 * 20 19 2 23 23 N 1.30901 * 120.00363 * 334.54059 * 22 20 19 24 24 Si 1.86806 * 119.99474 * 154.53822 * 22 20 19 25 25 H 1.48501 * 109.46978 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47257 * 299.99998 * 24 22 20 27 27 H 1.48500 * 109.47002 * 60.00176 * 24 22 20 28 28 H 1.08997 * 109.47089 * 270.28161 * 1 2 3 29 29 H 1.08997 * 109.46916 * 30.29194 * 1 2 3 30 30 H 1.08998 * 109.46297 * 150.28440 * 1 2 3 31 31 H 1.08001 * 119.91671 * 359.97438 * 3 2 1 32 32 H 0.96995 * 120.00052 * 359.97438 * 5 4 3 33 33 H 1.08996 * 109.47108 * 299.99770 * 6 5 4 34 34 H 1.08998 * 109.47379 * 60.00232 * 6 5 4 35 35 H 1.09000 * 109.46752 * 300.00232 * 7 6 5 36 36 H 1.09007 * 109.46708 * 60.00131 * 7 6 5 37 37 H 1.09001 * 109.47348 * 300.00506 * 8 7 6 38 38 H 1.09002 * 109.46907 * 59.99950 * 8 7 6 39 39 H 1.09000 * 109.46634 * 305.85667 * 10 9 8 40 40 H 1.09007 * 109.46060 * 65.82535 * 10 9 8 41 41 H 1.08998 * 109.51166 * 180.87849 * 11 10 9 42 42 H 1.09006 * 109.50516 * 60.75987 * 11 10 9 43 43 H 1.09006 * 109.51876 * 297.74067 * 12 11 10 44 44 H 1.09007 * 109.52635 * 177.55808 * 12 11 10 45 45 H 1.09001 * 109.50420 * 182.40578 * 13 12 11 46 46 H 1.09000 * 109.53483 * 62.30959 * 13 12 11 47 47 H 1.08999 * 109.46701 * 60.00042 * 16 14 9 48 48 H 1.08996 * 109.47247 * 179.97438 * 16 14 9 49 49 H 1.08997 * 109.46839 * 300.00517 * 16 14 9 50 50 H 1.08005 * 119.91519 * 179.97438 * 17 4 3 51 51 H 1.08005 * 120.08249 * 180.02562 * 18 17 4 52 52 H 0.96993 * 119.99738 * 354.14577 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5860 1.1820 -0.0058 5 7 4.2751 2.3874 -0.0118 6 6 5.7402 2.3935 -0.0173 7 6 6.2441 3.8382 -0.0239 8 6 7.7740 3.8445 -0.0290 9 7 8.2579 5.2316 -0.0348 10 6 7.5320 6.0462 0.9479 11 6 7.9580 7.5099 0.8135 12 6 9.4674 7.6205 1.0462 13 6 10.1978 6.7254 0.0414 14 6 9.7068 5.2845 0.1982 15 1 9.9255 4.9341 1.2070 16 6 10.4196 4.3895 -0.8177 17 6 4.2922 -0.0220 -0.0051 18 6 3.6222 -1.2092 0.0007 19 6 2.2132 -1.2188 0.0062 20 6 1.5126 -2.4441 0.0117 21 1 0.5135 -2.4930 0.4191 22 6 2.1122 -3.5948 -0.5103 23 7 3.0486 -3.4903 -1.4189 24 14 1.5767 -5.2810 0.0894 25 1 2.3591 -6.3284 -0.6149 26 1 1.8138 -5.3847 1.5517 27 1 0.1310 -5.4704 -0.1923 28 1 -0.3633 0.0051 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3632 -0.8926 -0.5094 31 1 1.6505 2.1153 -0.0004 32 1 3.7866 3.2254 -0.0123 33 1 6.1089 1.8838 0.8728 34 1 6.1023 1.8787 -0.9071 35 1 5.8753 4.3475 -0.9142 36 1 5.8820 4.3534 0.8658 37 1 8.1425 3.3352 0.8615 38 1 8.1365 3.3291 -0.9185 39 1 6.4601 5.9620 0.7686 40 1 7.7609 5.6922 1.9531 41 1 7.4306 8.1119 1.5534 42 1 7.7169 7.8687 -0.1872 43 1 9.7041 7.2985 2.0603 44 1 9.7823 8.6550 0.9087 45 1 11.2706 6.7669 0.2297 46 1 9.9925 7.0716 -0.9716 47 1 10.2007 4.7395 -1.8266 48 1 11.4951 4.4291 -0.6452 49 1 10.0706 3.3631 -0.7055 50 1 5.3722 -0.0130 -0.0100 51 1 4.1700 -2.1400 0.0016 52 1 3.2675 -2.6221 -1.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167753139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:06 Heat of formation + Delta-G solvation = -2.495762 kcal Electronic energy + Delta-G solvation = -25947.519987 eV Core-core repulsion = 22524.043800 eV Total energy + Delta-G solvation = -3423.476188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.74011 -38.29615 -36.12196 -34.45324 -33.29352 -32.84635 -31.35005 -30.36541 -28.23114 -27.31598 -26.25467 -25.35174 -24.04129 -23.34414 -21.65160 -21.27121 -20.55895 -19.88376 -19.33409 -17.56901 -16.37832 -15.91024 -15.71659 -15.40219 -14.96978 -14.65080 -14.39125 -14.27712 -14.06161 -13.89494 -13.53856 -13.20609 -12.99320 -12.58767 -12.48073 -12.33544 -12.23784 -12.14342 -11.99563 -11.80147 -11.58884 -11.42866 -11.24412 -11.19256 -11.13501 -11.00668 -10.97613 -10.67528 -10.66847 -10.44860 -10.38675 -10.31550 -9.52629 -9.32929 -8.98839 -8.52178 -8.48996 -7.51198 -6.99929 -6.49740 -4.05913 2.88907 2.96849 3.24717 3.38980 3.45146 3.55750 4.15994 4.25292 4.45648 4.52253 4.58011 4.72473 4.81444 4.92937 5.01937 5.03673 5.14982 5.19116 5.24225 5.32994 5.39862 5.47493 5.57261 5.59769 5.60088 5.62904 5.67553 5.68779 5.81791 5.83638 5.88092 5.94873 6.09491 6.12410 6.16357 6.21328 6.22520 6.38606 6.62308 6.65953 6.83075 6.87948 6.91975 6.94826 7.17320 7.42772 7.57207 7.64498 7.95841 7.98422 8.26284 8.38148 8.50680 8.70079 8.98692 9.12321 10.27411 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002134 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.641943 B =13115.610911 C =14016.015797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.145 4.145 4 C 0.085 3.915 5 N -0.762 5.762 6 C 0.141 3.859 7 C -0.131 4.131 8 C 0.059 3.941 9 N -0.532 5.532 10 C 0.048 3.952 11 C -0.117 4.117 12 C -0.122 4.122 13 C -0.111 4.111 14 C 0.081 3.919 15 H 0.038 0.962 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.179 4.179 19 C 0.069 3.931 20 C -0.529 4.529 21 H 0.072 0.928 22 C 0.038 3.962 23 N -0.813 5.813 24 Si 1.061 2.939 25 H -0.277 1.277 26 H -0.277 1.277 27 H -0.279 1.279 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.384 0.616 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.088 0.912 51 H 0.105 0.895 52 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.145 17.653 2.998 21.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.167 4.167 4 C -0.012 4.012 5 N -0.398 5.398 6 C 0.015 3.985 7 C -0.169 4.169 8 C -0.069 4.069 9 N -0.258 5.258 10 C -0.080 4.080 11 C -0.155 4.155 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.027 4.027 15 H 0.056 0.944 16 C -0.207 4.207 17 C -0.171 4.171 18 C -0.199 4.199 19 C 0.066 3.934 20 C -0.559 4.559 21 H 0.090 0.910 22 C -0.182 4.182 23 N -0.438 5.438 24 Si 0.886 3.114 25 H -0.202 1.202 26 H -0.203 1.203 27 H -0.204 1.204 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.216 0.784 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.123 0.877 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.597 16.121 2.346 20.593 hybrid contribution -0.225 1.666 0.991 1.951 sum 12.371 17.787 3.336 21.922 Atomic orbital electron populations 1.20400 0.93515 1.00517 0.99656 1.19276 0.94271 0.92586 1.10329 1.19726 0.91590 0.96485 1.08893 1.17239 0.90561 0.85150 1.08269 1.43790 1.03303 1.05144 1.87531 1.20907 0.82512 0.94957 1.00121 1.21902 0.94818 0.97382 1.02833 1.22060 0.94761 0.88917 1.01201 1.62010 1.03406 1.10499 1.49863 1.22220 0.99274 0.93284 0.93229 1.21594 0.95736 0.95813 1.02359 1.21593 0.95648 0.99673 0.99088 1.21627 0.99034 0.93941 1.00281 1.21628 0.87617 0.95934 0.97538 0.94402 1.21915 0.99590 0.99479 0.99721 1.19986 0.97069 0.91875 1.08205 1.20752 0.94522 0.96071 1.08543 1.17428 0.91360 0.92271 0.92380 1.20285 1.03353 0.93865 1.38379 0.90997 1.26825 0.93232 1.05009 0.93108 1.70474 1.24592 1.31198 1.17523 0.83705 0.76653 0.74093 0.76992 1.20167 1.20297 1.20421 0.93995 0.94469 0.91929 0.89459 0.78407 0.93825 0.93509 0.90733 0.91460 0.94743 0.90073 0.89848 0.95128 0.91688 0.91096 0.92427 0.91886 0.91726 0.91039 0.91682 0.92304 0.92269 0.89339 0.87673 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 9.39 36.01 0.34 -1.46 16 2 C -0.16 -3.99 5.90 -104.30 -0.62 -4.61 16 3 C -0.14 -3.27 9.46 -39.77 -0.38 -3.65 16 4 C 0.08 1.85 6.67 -83.69 -0.56 1.30 16 5 N -0.76 -13.29 5.70 -58.50 -0.33 -13.62 16 6 C 0.14 2.08 4.89 -4.04 -0.02 2.06 16 7 C -0.13 -1.49 4.58 -26.73 -0.12 -1.61 16 8 C 0.06 0.61 4.36 -3.83 -0.02 0.60 16 9 N -0.53 -5.22 4.64 -226.70 -1.05 -6.28 16 10 C 0.05 0.44 4.85 -3.84 -0.02 0.42 16 11 C -0.12 -0.91 6.09 -26.65 -0.16 -1.08 16 12 C -0.12 -0.88 6.00 -26.61 -0.16 -1.04 16 13 C -0.11 -0.84 5.37 -26.65 -0.14 -0.98 16 14 C 0.08 0.71 2.40 -67.72 -0.16 0.55 16 15 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 16 C -0.15 -1.21 8.78 37.16 0.33 -0.89 16 17 C -0.15 -3.51 9.23 -39.77 -0.37 -3.88 16 18 C -0.18 -4.68 7.89 -39.26 -0.31 -4.99 16 19 C 0.07 1.85 5.30 -106.79 -0.57 1.29 16 20 C -0.53 -14.30 8.04 -37.87 -0.30 -14.61 16 21 H 0.07 1.90 6.93 -52.49 -0.36 1.53 16 22 C 0.04 0.99 4.93 -17.34 -0.09 0.91 16 23 N -0.81 -22.31 12.31 55.54 0.68 -21.63 16 24 Si 1.06 22.40 30.00 -169.99 -5.10 17.30 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 27 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 28 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.06 1.38 6.77 -51.93 -0.35 1.03 16 31 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.38 5.96 8.47 -40.82 -0.35 5.62 16 33 H 0.04 0.68 7.93 -51.93 -0.41 0.26 16 34 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 37 H 0.03 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.08 0.86 6.84 -51.93 -0.36 0.50 16 39 H 0.08 0.77 5.81 -51.93 -0.30 0.47 16 40 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.50 6.55 -51.93 -0.34 0.16 16 50 H 0.09 1.90 6.68 -52.48 -0.35 1.55 16 51 H 0.11 2.85 6.49 -52.48 -0.34 2.51 16 52 H 0.30 8.36 6.69 -40.82 -0.27 8.09 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -28.24 393.34 -12.50 -40.74 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -9.30 Total: 9.23 kcal Atomic # 6 Polarization: -28.35 SS G_CDS: -3.32 Total: -31.67 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.70 Total: -41.53 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.10 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.24 -12.50 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167753139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.244 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds