Wall clock time and date at job start Tue Mar 31 2020 12:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36363 * 120.08201 * 2 1 4 4 C 1.39545 * 120.16612 * 180.27400 * 3 2 1 5 5 N 1.38852 * 119.84297 * 179.71265 * 4 3 2 6 6 C 1.46505 * 119.99618 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.46960 * 179.97438 * 6 5 4 8 8 C 1.52991 * 109.47052 * 179.97438 * 7 6 5 9 9 N 1.46904 * 109.47118 * 180.02562 * 8 7 6 10 10 C 1.46837 * 110.99883 * 45.79121 * 9 8 7 11 11 C 1.53032 * 109.52615 * 185.83959 * 10 9 8 12 12 C 1.53120 * 109.27792 * 300.82697 * 11 10 9 13 13 C 1.53114 * 109.16399 * 57.64989 * 12 11 10 14 14 C 1.46842 * 111.00078 * 170.00344 * 9 8 7 15 15 H 1.09000 * 109.46540 * 294.17137 * 14 9 8 16 16 C 1.53009 * 109.46438 * 54.14248 * 14 9 8 17 17 C 1.39586 * 120.30955 * 359.69128 * 4 3 2 18 18 C 1.36322 * 120.16489 * 0.02562 * 17 4 3 19 19 C 1.40864 * 120.08688 * 179.71021 * 2 1 3 20 20 C 1.41145 * 120.15253 * 0.02880 * 19 2 1 21 21 H 1.08001 * 119.99901 * 334.16841 * 20 19 2 22 22 C 1.39863 * 119.99591 * 154.16847 * 20 19 2 23 23 N 1.30901 * 120.00363 * 334.54059 * 22 20 19 24 24 Si 1.86806 * 119.99474 * 154.53822 * 22 20 19 25 25 H 1.48501 * 109.46978 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.47257 * 299.99998 * 24 22 20 27 27 H 1.48500 * 109.47002 * 60.00176 * 24 22 20 28 28 H 1.08997 * 109.47089 * 270.28161 * 1 2 3 29 29 H 1.08997 * 109.46916 * 30.29194 * 1 2 3 30 30 H 1.08998 * 109.46297 * 150.28440 * 1 2 3 31 31 H 1.08001 * 119.91671 * 359.97438 * 3 2 1 32 32 H 0.96995 * 120.00052 * 359.97438 * 5 4 3 33 33 H 1.08996 * 109.47108 * 299.99770 * 6 5 4 34 34 H 1.08998 * 109.47379 * 60.00232 * 6 5 4 35 35 H 1.09000 * 109.46752 * 300.00232 * 7 6 5 36 36 H 1.09007 * 109.46708 * 60.00131 * 7 6 5 37 37 H 1.09001 * 109.47348 * 300.00506 * 8 7 6 38 38 H 1.09002 * 109.46907 * 59.99950 * 8 7 6 39 39 H 1.09000 * 109.46634 * 305.85667 * 10 9 8 40 40 H 1.09007 * 109.46060 * 65.82535 * 10 9 8 41 41 H 1.08998 * 109.51166 * 180.87849 * 11 10 9 42 42 H 1.09006 * 109.50516 * 60.75987 * 11 10 9 43 43 H 1.09006 * 109.51876 * 297.74067 * 12 11 10 44 44 H 1.09007 * 109.52635 * 177.55808 * 12 11 10 45 45 H 1.09001 * 109.50420 * 182.40578 * 13 12 11 46 46 H 1.09000 * 109.53483 * 62.30959 * 13 12 11 47 47 H 1.08999 * 109.46701 * 60.00042 * 16 14 9 48 48 H 1.08996 * 109.47247 * 179.97438 * 16 14 9 49 49 H 1.08997 * 109.46839 * 300.00517 * 16 14 9 50 50 H 1.08005 * 119.91519 * 179.97438 * 17 4 3 51 51 H 1.08005 * 120.08249 * 180.02562 * 18 17 4 52 52 H 0.96993 * 119.99738 * 354.14577 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.1800 0.0000 4 6 3.5860 1.1820 -0.0058 5 7 4.2751 2.3874 -0.0118 6 6 5.7402 2.3935 -0.0173 7 6 6.2441 3.8382 -0.0239 8 6 7.7740 3.8445 -0.0290 9 7 8.2579 5.2316 -0.0348 10 6 7.5320 6.0462 0.9479 11 6 7.9580 7.5099 0.8135 12 6 9.4674 7.6205 1.0462 13 6 10.1978 6.7254 0.0414 14 6 9.7068 5.2845 0.1982 15 1 9.9255 4.9341 1.2070 16 6 10.4196 4.3895 -0.8177 17 6 4.2922 -0.0220 -0.0051 18 6 3.6222 -1.2092 0.0007 19 6 2.2132 -1.2188 0.0062 20 6 1.5126 -2.4441 0.0117 21 1 0.5135 -2.4930 0.4191 22 6 2.1122 -3.5948 -0.5103 23 7 3.0486 -3.4903 -1.4189 24 14 1.5767 -5.2810 0.0894 25 1 2.3591 -6.3284 -0.6149 26 1 1.8138 -5.3847 1.5517 27 1 0.1310 -5.4704 -0.1923 28 1 -0.3633 0.0051 1.0276 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3632 -0.8926 -0.5094 31 1 1.6505 2.1153 -0.0004 32 1 3.7866 3.2254 -0.0123 33 1 6.1089 1.8838 0.8728 34 1 6.1023 1.8787 -0.9071 35 1 5.8753 4.3475 -0.9142 36 1 5.8820 4.3534 0.8658 37 1 8.1425 3.3352 0.8615 38 1 8.1365 3.3291 -0.9185 39 1 6.4601 5.9620 0.7686 40 1 7.7609 5.6922 1.9531 41 1 7.4306 8.1119 1.5534 42 1 7.7169 7.8687 -0.1872 43 1 9.7041 7.2985 2.0603 44 1 9.7823 8.6550 0.9087 45 1 11.2706 6.7669 0.2297 46 1 9.9925 7.0716 -0.9716 47 1 10.2007 4.7395 -1.8266 48 1 11.4951 4.4291 -0.6452 49 1 10.0706 3.3631 -0.7055 50 1 5.3722 -0.0130 -0.0100 51 1 4.1700 -2.1400 0.0016 52 1 3.2675 -2.6221 -1.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167753139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:06 Heat of formation + Delta-G solvation = -16.566791 kcal Electronic energy + Delta-G solvation = -25948.130153 eV Core-core repulsion = 22524.043800 eV Total energy + Delta-G solvation = -3424.086353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.50079 -40.06608 -37.53208 -35.72664 -34.74275 -33.67631 -32.92701 -31.78097 -29.79498 -28.15123 -27.86954 -26.49950 -25.63600 -24.47741 -22.88685 -22.34656 -21.74895 -21.09126 -20.56503 -19.48680 -17.60801 -17.16063 -16.68087 -16.48731 -16.27274 -16.10115 -15.51533 -15.32568 -15.15849 -15.11385 -14.84128 -14.44449 -14.26081 -14.11334 -13.85725 -13.66010 -13.53123 -13.14863 -13.05916 -12.91511 -12.79693 -12.76250 -12.64981 -12.60519 -12.36071 -12.25084 -11.99158 -11.95505 -11.82180 -11.58231 -11.39330 -11.21726 -11.12964 -11.09102 -10.82504 -10.33007 -9.41301 -9.27333 -9.00013 -8.28595 -6.04966 0.97276 1.10569 1.52556 1.68875 1.80974 2.41281 2.66395 2.80475 3.01086 3.65380 3.80832 3.85081 3.89955 4.04615 4.05598 4.16468 4.24465 4.32275 4.35913 4.41545 4.42873 4.51443 4.56092 4.62517 4.65729 4.70693 4.73517 4.81583 4.85186 4.90114 4.96760 4.97665 5.02986 5.04314 5.06065 5.16242 5.16396 5.21645 5.22689 5.24787 5.29898 5.32078 5.48937 5.56354 5.63050 5.79456 5.94874 6.02817 6.11612 6.19034 6.36915 6.43495 6.72379 7.00127 7.14274 7.25869 8.23263 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002134 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.641943 B =13115.610911 C =14016.015797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.169 4.169 3 C -0.156 4.156 4 C 0.107 3.893 5 N -0.751 5.751 6 C 0.140 3.860 7 C -0.114 4.114 8 C 0.063 3.937 9 N -0.537 5.537 10 C 0.045 3.955 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.108 4.108 14 C 0.078 3.922 15 H 0.032 0.968 16 C -0.147 4.147 17 C -0.167 4.167 18 C -0.194 4.194 19 C 0.029 3.971 20 C -0.559 4.559 21 H 0.069 0.931 22 C -0.003 4.003 23 N -0.839 5.839 24 Si 1.112 2.888 25 H -0.276 1.276 26 H -0.268 1.268 27 H -0.259 1.259 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.119 0.881 32 H 0.398 0.602 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.026 0.974 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.102 0.898 51 H 0.082 0.918 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.251 19.905 3.650 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.171 4.171 3 C -0.179 4.179 4 C 0.008 3.992 5 N -0.386 5.386 6 C 0.014 3.986 7 C -0.152 4.152 8 C -0.066 4.066 9 N -0.263 5.263 10 C -0.083 4.083 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.146 4.146 14 C -0.030 4.030 15 H 0.050 0.950 16 C -0.205 4.205 17 C -0.189 4.189 18 C -0.214 4.214 19 C 0.026 3.974 20 C -0.589 4.589 21 H 0.087 0.913 22 C -0.216 4.216 23 N -0.465 5.465 24 Si 0.931 3.069 25 H -0.201 1.201 26 H -0.193 1.193 27 H -0.183 1.183 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.137 0.863 32 H 0.232 0.768 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.120 0.880 51 H 0.100 0.900 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.712 18.436 3.001 22.594 hybrid contribution -0.177 1.226 0.809 1.479 sum 12.535 19.662 3.809 23.627 Atomic orbital electron populations 1.20395 0.91443 1.01149 1.00700 1.19763 0.96151 0.92482 1.08702 1.20062 0.92007 0.97181 1.08609 1.17400 0.90850 0.86159 1.04808 1.43863 1.04521 1.04222 1.86027 1.21019 0.80776 0.97275 0.99502 1.21734 0.95329 0.94832 1.03319 1.21970 0.94022 0.89609 1.00962 1.62050 1.04140 1.09867 1.50228 1.22271 0.99161 0.94068 0.92753 1.21585 0.96338 0.94901 1.02449 1.21599 0.95142 1.00289 0.98894 1.21617 0.99823 0.93019 1.00147 1.21709 0.87026 0.96964 0.97319 0.94999 1.21897 1.00381 0.98865 0.99313 1.20123 0.97927 0.91826 1.09025 1.20690 0.94686 0.96194 1.09838 1.17773 0.91916 0.93484 0.94222 1.20431 1.03677 0.94907 1.39876 0.91282 1.28209 0.92593 1.08547 0.92241 1.70596 1.26693 1.29868 1.19346 0.83065 0.77265 0.69747 0.76853 1.20112 1.19274 1.18345 0.92636 0.91691 0.93360 0.86267 0.76785 0.94299 0.94229 0.90508 0.90598 0.95129 0.90293 0.89963 0.95616 0.90618 0.91531 0.92465 0.90703 0.90499 0.91491 0.92069 0.91004 0.93000 0.87958 0.89958 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.32 9.39 71.24 0.67 -2.65 16 2 C -0.17 -8.22 5.90 -19.66 -0.12 -8.34 16 3 C -0.16 -6.77 9.46 22.15 0.21 -6.56 16 4 C 0.11 4.55 6.67 38.67 0.26 4.81 16 5 N -0.75 -24.44 5.70 -338.98 -1.93 -26.37 16 6 C 0.14 3.89 4.89 86.38 0.42 4.31 16 7 C -0.11 -2.36 4.58 30.59 0.14 -2.22 16 8 C 0.06 1.22 4.36 86.30 0.38 1.60 16 9 N -0.54 -9.72 4.64 -871.13 -4.04 -13.76 16 10 C 0.05 0.74 4.85 86.33 0.42 1.16 16 11 C -0.11 -1.56 6.09 30.65 0.19 -1.37 16 12 C -0.12 -1.49 6.00 30.67 0.18 -1.30 16 13 C -0.11 -1.42 5.37 30.64 0.16 -1.26 16 14 C 0.08 1.25 2.40 44.94 0.11 1.36 16 15 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 16 C -0.15 -2.20 8.78 71.99 0.63 -1.57 16 17 C -0.17 -7.90 9.23 22.15 0.20 -7.69 16 18 C -0.19 -10.53 7.89 22.47 0.18 -10.35 16 19 C 0.03 1.61 5.30 -21.27 -0.11 1.50 16 20 C -0.56 -31.19 8.04 23.38 0.19 -31.00 16 21 H 0.07 3.74 6.93 -2.91 -0.02 3.72 16 22 C 0.00 -0.16 4.93 85.23 0.42 0.26 16 23 N -0.84 -48.16 12.31 21.81 0.27 -47.89 16 24 Si 1.11 45.98 30.00 68.60 2.06 48.04 16 25 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 27 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 30 H 0.05 2.11 6.77 -2.39 -0.02 2.10 16 31 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.40 11.03 8.47 -92.71 -0.79 10.25 16 33 H 0.04 1.15 7.93 -2.39 -0.02 1.13 16 34 H 0.04 1.19 7.93 -2.39 -0.02 1.17 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.47 6.21 -2.38 -0.01 1.46 16 37 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 38 H 0.08 1.58 6.84 -2.39 -0.02 1.57 16 39 H 0.08 1.35 5.81 -2.39 -0.01 1.34 16 40 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.05 0.84 6.55 -2.39 -0.02 0.83 16 50 H 0.10 4.44 6.68 -2.91 -0.02 4.42 16 51 H 0.08 4.74 6.49 -2.91 -0.02 4.73 16 52 H 0.28 16.63 6.69 -92.71 -0.62 16.01 16 Total: -1.00 -62.58 393.34 1.13 -61.45 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.25 Total: 37.86 kcal Atomic # 6 Polarization: -63.85 SS G_CDS: 4.53 Total: -59.32 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -5.71 Total: -88.03 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.06 Total: 48.04 kcal Total: -62.58 1.13 -61.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167753139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -62.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds