Wall clock time and date at job start Tue Mar 31 2020 12:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99998 * 2 1 4 4 C 1.53004 * 109.47007 * 269.99685 * 3 2 1 5 5 C 1.53002 * 117.49670 * 243.74722 * 4 3 2 6 6 C 1.52998 * 117.49551 * 175.09148 * 4 3 2 7 7 C 1.38992 * 119.99747 * 179.97438 * 2 1 3 8 8 C 1.39183 * 120.04029 * 184.98250 * 7 2 1 9 9 N 1.32032 * 120.07506 * 180.02562 * 8 7 2 10 10 C 1.32068 * 120.17679 * 359.66346 * 9 8 7 11 11 C 1.39136 * 120.07607 * 0.61350 * 10 9 8 12 12 N 1.38997 * 120.03623 * 179.68925 * 11 10 9 13 13 C 1.46498 * 119.99889 * 359.71858 * 12 11 10 14 14 H 1.08993 * 109.41454 * 35.14612 * 13 12 11 15 15 C 1.52955 * 109.41158 * 155.00506 * 13 12 11 16 16 C 1.53230 * 109.40686 * 183.70159 * 15 13 12 17 17 C 1.51264 * 108.54060 * 305.37674 * 16 15 13 18 18 C 1.37879 * 120.85152 * 231.32414 * 17 16 15 19 19 N 1.31510 * 120.00089 * 180.02562 * 18 17 16 20 20 Si 1.86805 * 119.99746 * 0.02562 * 18 17 16 21 21 H 1.48493 * 109.47163 * 90.00112 * 20 18 17 22 22 H 1.48500 * 109.46726 * 210.00295 * 20 18 17 23 23 H 1.48504 * 109.46927 * 329.99943 * 20 18 17 24 24 C 1.51270 * 118.29993 * 51.34019 * 17 16 15 25 25 C 1.53232 * 108.69741 * 308.56051 * 24 17 16 26 26 N 1.32734 * 120.04400 * 4.99849 * 7 2 1 27 27 H 1.08995 * 109.47642 * 270.00064 * 1 2 3 28 28 H 1.09007 * 109.47093 * 30.00171 * 1 2 3 29 29 H 1.08996 * 109.47257 * 149.99795 * 1 2 3 30 30 H 1.09003 * 109.47097 * 30.00140 * 3 2 1 31 31 H 1.09003 * 109.46780 * 149.99865 * 3 2 1 32 32 H 1.08996 * 115.54970 * 29.41755 * 4 3 2 33 33 H 1.08997 * 117.49943 * 0.02562 * 5 4 3 34 34 H 1.08994 * 117.49375 * 145.02077 * 5 4 3 35 35 H 1.08998 * 117.49664 * 214.98216 * 6 4 3 36 36 H 1.09000 * 117.49760 * 359.96784 * 6 4 3 37 37 H 1.07995 * 119.95747 * 0.02562 * 8 7 2 38 38 H 1.07995 * 119.96175 * 180.32164 * 10 9 8 39 39 H 0.97001 * 119.99975 * 179.72634 * 12 11 10 40 40 H 1.09007 * 109.48519 * 63.72753 * 15 13 12 41 41 H 1.08998 * 109.49626 * 303.69097 * 15 13 12 42 42 H 1.09001 * 109.62928 * 185.65483 * 16 15 13 43 43 H 1.09001 * 109.61923 * 65.08898 * 16 15 13 44 44 H 0.97004 * 120.00027 * 179.97438 * 19 18 17 45 45 H 1.09002 * 109.62532 * 68.37253 * 24 17 16 46 46 H 1.09001 * 109.62715 * 188.74940 * 24 17 16 47 47 H 1.08993 * 109.48218 * 174.70373 * 25 24 17 48 48 H 1.08997 * 109.48080 * 294.74309 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.9074 1.7958 -1.9084 6 6 3.1072 3.0764 -1.6578 7 6 2.1599 -1.2037 0.0005 8 6 3.5478 -1.2070 0.1052 9 7 4.2086 -2.3500 0.1053 10 6 3.5558 -3.4943 0.0128 11 6 2.1688 -3.4988 -0.0979 12 7 1.4830 -4.7034 -0.2017 13 6 2.2211 -5.9689 -0.2006 14 1 3.0825 -5.8854 0.4619 15 6 1.3062 -7.0905 0.2938 16 6 2.1036 -8.3960 0.3828 17 6 2.7441 -8.6610 -0.9617 18 6 2.5964 -9.8810 -1.5871 19 7 3.1610 -10.0935 -2.7557 20 14 1.5944 -11.2319 -0.7743 21 1 0.1764 -11.1213 -1.2009 22 1 2.1308 -12.5566 -1.1774 23 1 1.6797 -11.0916 0.7017 24 6 3.5510 -7.5536 -1.6025 25 6 2.7034 -6.2772 -1.6236 26 7 1.5009 -2.3516 -0.0991 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1383 0.5139 32 1 1.7089 1.3881 -2.1713 33 1 4.6828 1.5370 -1.1874 34 1 4.1207 1.5302 -2.9437 35 1 2.7943 3.6527 -2.5284 36 1 3.3556 3.6606 -0.7718 37 1 4.0847 -0.2735 0.1864 38 1 4.0994 -4.4275 0.0184 39 1 0.5158 -4.7061 -0.2748 40 1 0.4776 -7.2176 -0.4030 41 1 0.9167 -6.8346 1.2791 42 1 1.4340 -9.2174 0.6377 43 1 2.8775 -8.3010 1.1445 44 1 3.0574 -10.9518 -3.1954 45 1 4.4589 -7.3806 -1.0245 46 1 3.8143 -7.8352 -2.6221 47 1 3.3044 -5.4478 -1.9964 48 1 1.8419 -6.4237 -2.2751 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:41 Heat of formation + Delta-G solvation = 62.683072 kcal Electronic energy + Delta-G solvation = -26329.561208 eV Core-core repulsion = 22805.371043 eV Total energy + Delta-G solvation = -3524.190165 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94669 -39.55985 -38.79695 -36.89537 -36.14377 -34.49640 -33.22184 -31.46820 -30.71800 -29.32764 -28.38734 -26.80186 -24.57432 -24.11979 -23.26494 -23.19288 -22.65487 -21.36414 -21.10621 -18.99296 -18.55702 -18.00252 -17.32395 -16.97272 -16.46842 -16.35404 -16.31292 -15.88954 -15.42189 -15.10613 -15.04115 -14.71339 -14.30009 -14.22565 -14.01165 -13.79745 -13.43092 -13.32432 -12.99618 -12.91522 -12.75231 -12.61935 -12.59059 -12.32393 -12.24706 -12.19614 -11.92127 -11.84467 -11.52322 -11.36067 -11.27336 -10.88567 -10.84931 -10.55907 -10.52076 -9.98739 -9.29854 -8.34277 -8.14755 -6.09817 0.33694 0.51186 1.40603 1.43987 1.52472 1.69587 2.27285 2.42566 2.92490 3.00195 3.13919 3.65529 3.68593 3.77518 3.82466 3.98007 4.04049 4.10495 4.20458 4.24734 4.29706 4.42675 4.46816 4.60835 4.62024 4.65384 4.72211 4.82664 4.85123 4.92085 4.98493 5.00209 5.02409 5.06970 5.11384 5.21549 5.25413 5.27706 5.29933 5.36948 5.59093 5.63778 5.73425 5.78106 5.84485 6.08492 6.25200 6.35127 6.63112 6.81112 6.97369 7.21325 7.48399 8.96129 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.028520 B = 0.002592 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.540085 B =10801.774570 C =11214.945727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.598 5.598 3 C 0.154 3.846 4 C -0.182 4.182 5 C -0.191 4.191 6 C -0.155 4.155 7 C 0.400 3.600 8 C -0.085 4.085 9 N -0.388 5.388 10 C -0.101 4.101 11 C 0.406 3.594 12 N -0.700 5.700 13 C 0.176 3.824 14 H 0.076 0.924 15 C -0.105 4.105 16 C -0.015 4.015 17 C -0.498 4.498 18 C 0.019 3.981 19 N -0.933 5.933 20 Si 0.943 3.057 21 H -0.274 1.274 22 H -0.296 1.296 23 H -0.249 1.249 24 C 0.009 3.991 25 C -0.106 4.106 26 N -0.581 5.581 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.178 0.822 38 H 0.154 0.846 39 H 0.405 0.595 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.027 0.973 44 H 0.262 0.738 45 H 0.004 0.996 46 H 0.022 0.978 47 H 0.037 0.963 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 25.319 6.867 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.310 5.310 3 C 0.032 3.968 4 C -0.201 4.201 5 C -0.228 4.228 6 C -0.193 4.193 7 C 0.159 3.841 8 C -0.254 4.254 9 N -0.101 5.101 10 C -0.267 4.267 11 C 0.165 3.835 12 N -0.329 5.329 13 C 0.071 3.929 14 H 0.094 0.906 15 C -0.144 4.144 16 C -0.053 4.053 17 C -0.518 4.518 18 C -0.179 4.179 19 N -0.573 5.573 20 Si 0.769 3.231 21 H -0.199 1.199 22 H -0.223 1.223 23 H -0.173 1.173 24 C -0.029 4.029 25 C -0.145 4.145 26 N -0.315 5.315 27 H 0.074 0.926 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.132 0.868 37 H 0.195 0.805 38 H 0.171 0.829 39 H 0.241 0.759 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.022 0.978 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.061 25.155 6.751 26.532 hybrid contribution -0.651 -1.337 -0.570 1.593 sum -5.712 23.817 6.181 25.261 Atomic orbital electron populations 1.21665 0.77946 1.03206 1.01814 1.46537 1.06278 1.01508 1.76718 1.21341 0.97995 0.83130 0.94384 1.22790 0.96637 1.02344 0.98369 1.23110 0.94284 1.03077 1.02356 1.23030 1.02294 0.89739 1.04194 1.19221 0.89685 0.86467 0.88759 1.22980 0.90615 0.97605 1.14165 1.67956 1.39349 0.98240 1.04521 1.22689 0.91044 0.97492 1.15515 1.19072 0.89720 0.86294 0.88461 1.44857 1.09380 1.01578 1.77122 1.20909 0.94648 0.80901 0.96413 0.90622 1.21720 0.97820 0.94737 1.00077 1.19734 0.95795 0.94287 0.95507 1.20643 1.30272 0.97573 1.03275 1.25662 0.96828 1.00265 0.95134 1.69991 1.46042 1.24524 1.16777 0.85777 0.78991 0.78240 0.80104 1.19942 1.22315 1.17281 1.19305 0.94142 0.92274 0.97195 1.21942 0.99062 0.97351 0.96145 1.67296 1.39288 0.96763 1.28153 0.92642 0.89289 0.92228 0.87027 0.89432 0.89033 0.88127 0.89918 0.88287 0.86820 0.80512 0.82882 0.75866 0.92515 0.91192 0.94334 0.95447 0.92916 0.97785 0.95879 0.94388 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.51 127.77 1.34 2.89 16 2 N -0.60 -11.41 2.99 -728.49 -2.18 -13.59 16 3 C 0.15 1.89 5.54 86.38 0.48 2.37 16 4 C -0.18 -2.39 6.01 -10.79 -0.06 -2.46 16 5 C -0.19 -2.64 10.18 30.62 0.31 -2.32 16 6 C -0.16 -1.47 10.25 30.62 0.31 -1.15 16 7 C 0.40 10.77 7.37 132.98 0.98 11.75 16 8 C -0.09 -2.32 10.42 84.89 0.88 -1.44 16 9 N -0.39 -12.81 10.48 -194.09 -2.03 -14.84 16 10 C -0.10 -3.47 9.98 84.87 0.85 -2.62 16 11 C 0.41 13.47 7.64 132.96 1.02 14.48 16 12 N -0.70 -22.29 5.24 -323.75 -1.70 -23.99 16 13 C 0.18 6.25 2.05 45.10 0.09 6.34 16 14 H 0.08 2.73 6.46 -2.39 -0.02 2.71 16 15 C -0.11 -3.74 5.41 30.66 0.17 -3.57 16 16 C -0.02 -0.64 5.59 30.10 0.17 -0.47 16 17 C -0.50 -25.44 5.52 -16.17 -0.09 -25.53 16 18 C 0.02 1.03 5.46 84.66 0.46 1.49 16 19 N -0.93 -54.82 12.73 21.45 0.27 -54.54 16 20 Si 0.94 42.25 27.27 68.60 1.87 44.12 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.25 -10.32 6.46 99.48 0.64 -9.68 16 24 C 0.01 0.44 5.95 30.11 0.18 0.62 16 25 C -0.11 -4.44 5.46 30.80 0.17 -4.27 16 26 N -0.58 -18.02 9.28 -190.06 -1.76 -19.79 16 27 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 0.96 8.07 -2.38 -0.02 0.94 16 29 H 0.06 1.22 7.32 -2.39 -0.02 1.21 16 30 H 0.11 0.81 8.07 -2.39 -0.02 0.80 16 31 H 0.09 1.01 5.73 -2.39 -0.01 1.00 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.31 7.84 -2.39 -0.02 1.29 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.18 3.71 5.83 -2.91 -0.02 3.70 16 38 H 0.15 5.41 6.15 -2.91 -0.02 5.39 16 39 H 0.41 11.82 8.73 -92.71 -0.81 11.02 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.04 1.59 4.78 -2.39 -0.01 1.58 16 43 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 44 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.02 1.29 7.07 -2.39 -0.02 1.27 16 47 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 48 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -63.55 375.54 1.83 -61.72 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.10 Total: 24.79 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 7.26 Total: -3.89 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -7.40 Total: -126.75 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.87 Total: 44.12 kcal Total: -63.55 1.83 -61.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.404 kcal (2) G-P(sol) polarization free energy of solvation -63.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds