Wall clock time and date at job start Tue Mar 31 2020 11:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48507 * 109.46910 * 270.00421 * 3 2 1 5 5 H 1.48500 * 109.46741 * 30.00135 * 3 2 1 6 6 H 1.48493 * 109.47549 * 150.00417 * 3 2 1 7 7 C 1.37880 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00119 * 179.72418 * 7 2 1 10 10 C 1.53002 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47362 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46920 * 179.97438 * 11 10 9 13 13 C 1.39006 * 119.99801 * 180.02562 * 12 11 10 14 14 C 1.39335 * 120.09399 * 359.72739 * 13 12 11 15 15 N 1.31923 * 119.88718 * 179.68772 * 14 13 12 16 16 C 1.32270 * 120.08499 * 0.60873 * 15 14 13 17 17 C 1.38157 * 120.19402 * 359.66263 * 16 15 14 18 18 C 1.50702 * 119.94561 * 180.02562 * 17 16 15 19 19 H 1.09004 * 109.57890 * 205.12054 * 18 17 16 20 20 C 1.53143 * 109.58001 * 325.37944 * 18 17 16 21 21 N 1.46903 * 109.37257 * 119.81229 * 20 18 17 22 22 C 1.46946 * 111.05576 * 298.00001 * 21 20 18 23 23 C 1.53121 * 109.35555 * 61.94903 * 22 21 20 24 24 C 1.53379 * 109.58080 * 84.72234 * 18 17 16 25 25 C 1.53393 * 108.59933 * 181.22947 * 24 18 17 26 26 C 1.46941 * 111.05595 * 61.99172 * 21 20 18 27 27 N 1.32248 * 120.11112 * 0.02866 * 17 16 15 28 28 H 0.97004 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.47183 * 299.99749 * 9 7 2 30 30 H 1.08994 * 109.47595 * 59.99477 * 9 7 2 31 31 H 1.08997 * 109.47132 * 299.99948 * 10 9 7 32 32 H 1.09002 * 109.46709 * 59.99686 * 10 9 7 33 33 H 1.08997 * 109.47358 * 300.00304 * 11 10 9 34 34 H 1.09002 * 109.47061 * 60.00396 * 11 10 9 35 35 H 0.96993 * 120.00356 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.05728 * 359.97438 * 14 13 12 37 37 H 1.07999 * 119.90212 * 179.68889 * 16 15 14 38 38 H 1.09002 * 109.48859 * 239.78397 * 20 18 17 39 39 H 1.09005 * 109.48520 * 359.84455 * 20 18 17 40 40 H 1.08997 * 109.49274 * 181.91735 * 22 21 20 41 41 H 1.09004 * 109.48935 * 301.99009 * 22 21 20 42 42 H 1.08991 * 109.58015 * 240.26048 * 23 22 21 43 43 H 1.09002 * 109.67812 * 119.93429 * 23 22 21 44 44 H 1.09001 * 110.11680 * 60.58597 * 24 18 17 45 45 H 1.09003 * 109.57065 * 299.18889 * 25 24 18 46 46 H 1.09001 * 109.68015 * 178.86835 * 25 24 18 47 47 H 1.09005 * 109.48910 * 58.00268 * 26 21 20 48 48 H 1.09003 * 109.49070 * 178.07230 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0068 10 6 4.0215 -2.6366 -0.0055 11 6 5.5515 -2.6365 -0.0125 12 7 6.0398 -4.0178 -0.0106 13 6 7.4064 -4.2718 -0.0156 14 6 8.3136 -3.2142 -0.0281 15 7 9.6097 -3.4599 -0.0265 16 6 10.0480 -4.7078 -0.0253 17 6 9.1516 -5.7591 -0.0185 18 6 9.6572 -7.1788 -0.0165 19 1 8.9020 -7.8361 -0.4475 20 6 10.9445 -7.2663 -0.8414 21 7 12.0411 -7.7370 0.0153 22 6 12.2948 -6.7945 1.1138 23 6 11.0459 -6.6927 1.9938 24 6 9.9608 -7.6143 1.4225 25 6 10.5021 -9.0493 1.3954 26 6 11.7662 -9.0849 0.5320 27 7 7.8507 -5.5217 -0.0139 28 1 -0.4851 0.8401 0.0004 29 1 3.8711 -0.6820 -0.8994 30 1 3.8785 -0.6785 0.8805 31 1 3.6620 -3.1483 0.8872 32 1 3.6544 -3.1525 -0.8927 33 1 5.9107 -2.1250 -0.9054 34 1 5.9189 -2.1205 0.8745 35 1 5.4095 -4.7550 -0.0059 36 1 7.9562 -2.1951 -0.0344 37 1 11.1098 -4.9056 -0.0291 38 1 10.8015 -7.9650 -1.6657 39 1 11.1901 -6.2811 -1.2378 40 1 13.1334 -7.1505 1.7122 41 1 12.5314 -5.8128 0.7033 42 1 10.6857 -5.6641 1.9992 43 1 11.2877 -7.0004 3.0112 44 1 9.0554 -7.5665 2.0275 45 1 9.7507 -9.7150 0.9706 46 1 10.7430 -9.3699 2.4090 47 1 11.6177 -9.7708 -0.3021 48 1 12.6092 -9.4222 1.1350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:56 Heat of formation + Delta-G solvation = 46.871559 kcal Electronic energy + Delta-G solvation = -26082.801386 eV Core-core repulsion = 22557.925582 eV Total energy + Delta-G solvation = -3524.875804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88934 -40.37757 -36.85936 -34.53730 -34.02993 -32.64432 -32.31392 -31.42803 -31.20616 -28.97725 -27.04696 -24.99286 -24.17221 -23.34034 -23.10764 -23.02888 -21.41861 -20.43928 -18.09802 -17.79238 -17.41340 -16.91092 -16.78301 -16.33456 -16.28182 -15.91903 -15.39947 -14.74218 -14.50302 -14.08902 -13.81019 -13.46447 -13.34909 -13.10276 -12.77370 -12.70089 -12.56095 -12.54723 -12.43907 -12.15805 -12.02893 -11.88932 -11.50711 -11.43233 -11.18382 -11.10797 -10.99391 -10.67073 -10.64726 -10.19251 -10.01445 -9.82352 -9.76691 -9.30752 -9.06074 -8.63597 -8.61804 -7.82340 -6.11801 -4.11240 0.90736 1.29950 2.98743 3.25648 3.33756 3.35609 3.58499 3.70320 3.94193 4.22123 4.36132 4.38111 4.39692 4.51119 4.52682 4.66845 4.75128 4.84382 4.86703 4.94502 5.03270 5.09490 5.13526 5.21486 5.30610 5.32626 5.36795 5.42581 5.51181 5.52572 5.54365 5.65177 5.73809 5.77353 5.78333 5.81241 5.87199 6.14038 6.29164 6.36811 6.65115 6.65530 6.67314 6.79747 7.12067 7.25682 7.43561 7.53315 7.69073 7.97825 8.44046 8.91941 9.49590 11.01393 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.002144 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.024492 B =13054.524406 C =13452.084834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.112 4.112 11 C 0.116 3.884 12 N -0.707 5.707 13 C 0.367 3.633 14 C -0.019 4.019 15 N -0.398 5.398 16 C -0.037 4.037 17 C 0.146 3.854 18 C -0.065 4.065 19 H 0.094 0.906 20 C 0.053 3.947 21 N -0.527 5.527 22 C 0.050 3.950 23 C -0.157 4.157 24 C -0.075 4.075 25 C -0.148 4.148 26 C 0.051 3.949 27 N -0.509 5.509 28 H 0.264 0.736 29 H 0.015 0.985 30 H 0.019 0.981 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.158 -17.136 1.699 31.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.048 4.048 10 C -0.150 4.150 11 C -0.007 4.007 12 N -0.337 5.337 13 C 0.126 3.874 14 C -0.189 4.189 15 N -0.111 5.111 16 C -0.197 4.197 17 C 0.004 3.996 18 C -0.087 4.087 19 H 0.112 0.888 20 C -0.076 4.076 21 N -0.247 5.247 22 C -0.078 4.078 23 C -0.196 4.196 24 C -0.095 4.095 25 C -0.187 4.187 26 C -0.077 4.077 27 N -0.233 5.233 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.243 0.757 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.385 -16.804 1.390 31.312 hybrid contribution -0.971 0.720 0.569 1.336 sum 25.414 -16.084 1.959 30.140 Atomic orbital electron populations 1.69906 1.06331 1.27022 1.50716 1.25040 0.94770 0.99263 0.94440 0.86766 0.80346 0.83527 0.78574 1.20217 1.21320 1.18944 1.21071 0.89230 0.94563 1.51347 0.90999 1.19502 0.97462 0.91173 0.96644 1.21687 0.89976 1.01228 1.02151 1.21840 0.97246 0.80258 1.01342 1.44872 1.01729 1.09464 1.77641 1.19470 0.87280 0.90014 0.90642 1.23121 0.88715 0.99804 1.07211 1.68221 1.15118 1.22226 1.05541 1.23146 1.01202 0.88277 1.07096 1.21702 0.88464 0.96657 0.92782 1.20829 0.99012 0.91442 0.97386 0.88773 1.22468 0.87376 1.02428 0.95289 1.62547 1.39829 1.02511 1.19771 1.22261 0.96809 0.96857 0.91865 1.22362 0.96561 1.00683 0.99999 1.21081 0.98721 0.94885 0.94781 1.22270 0.98966 0.96183 1.01330 1.22237 0.96515 0.90624 0.98359 1.67754 1.16030 1.20521 1.18953 0.92627 0.96695 0.96266 0.91861 0.91874 0.91708 0.91748 0.75729 0.81802 0.82132 0.89750 0.89523 0.90338 0.90343 0.91075 0.91363 0.90057 0.91309 0.91274 0.90457 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C -0.01 -0.22 4.04 -27.88 -0.11 -0.33 16 10 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 11 C 0.12 1.67 4.90 -4.04 -0.02 1.65 16 12 N -0.71 -9.64 5.73 -60.31 -0.35 -9.99 16 13 C 0.37 5.16 7.67 -154.73 -1.19 3.97 16 14 C -0.02 -0.26 10.49 -17.10 -0.18 -0.44 16 15 N -0.40 -5.43 10.49 -12.88 -0.14 -5.56 16 16 C -0.04 -0.43 7.72 -17.39 -0.13 -0.57 16 17 C 0.15 1.71 5.41 -82.44 -0.45 1.26 16 18 C -0.07 -0.58 2.64 -91.50 -0.24 -0.82 16 19 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.05 0.41 5.44 -3.75 -0.02 0.39 16 21 N -0.53 -3.79 5.22 -234.29 -1.22 -5.01 16 22 C 0.05 0.34 5.63 -3.74 -0.02 0.32 16 23 C -0.16 -1.21 5.19 -26.46 -0.14 -1.34 16 24 C -0.07 -0.61 2.97 -90.01 -0.27 -0.88 16 25 C -0.15 -0.94 5.75 -26.46 -0.15 -1.09 16 26 C 0.05 0.31 6.09 -3.74 -0.02 0.28 16 27 N -0.51 -7.02 10.45 -8.48 -0.09 -7.11 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.01 0.32 7.58 -51.92 -0.39 -0.07 16 30 H 0.02 0.42 7.19 -51.93 -0.37 0.05 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.89 7.93 -51.93 -0.41 0.48 16 34 H 0.06 0.89 7.95 -51.93 -0.41 0.48 16 35 H 0.41 5.34 8.60 -40.82 -0.35 4.99 16 36 H 0.16 2.03 6.73 -52.49 -0.35 1.68 16 37 H 0.16 1.54 4.19 -52.49 -0.22 1.32 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 0.70 5.78 -51.93 -0.30 0.40 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.53 6.48 -51.93 -0.34 0.19 16 42 H 0.07 0.66 5.88 -51.93 -0.31 0.36 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -30.64 362.59 -11.43 -42.08 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.69 Total: 2.94 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.51 Total: -12.70 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -1.02 Total: -54.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.64 -11.43 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.947 kcal (2) G-P(sol) polarization free energy of solvation -30.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds