Wall clock time and date at job start Tue Mar 31 2020 11:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48507 * 109.46910 * 270.00421 * 3 2 1 5 5 H 1.48500 * 109.46741 * 30.00135 * 3 2 1 6 6 H 1.48493 * 109.47549 * 150.00417 * 3 2 1 7 7 C 1.37880 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00067 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00119 * 179.72418 * 7 2 1 10 10 C 1.53002 * 109.47479 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47362 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46920 * 179.97438 * 11 10 9 13 13 C 1.39006 * 119.99801 * 180.02562 * 12 11 10 14 14 C 1.39335 * 120.09399 * 359.72739 * 13 12 11 15 15 N 1.31923 * 119.88718 * 179.68772 * 14 13 12 16 16 C 1.32270 * 120.08499 * 0.60873 * 15 14 13 17 17 C 1.38157 * 120.19402 * 359.66263 * 16 15 14 18 18 C 1.50702 * 119.94561 * 180.02562 * 17 16 15 19 19 H 1.09004 * 109.57890 * 205.12054 * 18 17 16 20 20 C 1.53143 * 109.58001 * 325.37944 * 18 17 16 21 21 N 1.46903 * 109.37257 * 119.81229 * 20 18 17 22 22 C 1.46946 * 111.05576 * 298.00001 * 21 20 18 23 23 C 1.53121 * 109.35555 * 61.94903 * 22 21 20 24 24 C 1.53379 * 109.58080 * 84.72234 * 18 17 16 25 25 C 1.53393 * 108.59933 * 181.22947 * 24 18 17 26 26 C 1.46941 * 111.05595 * 61.99172 * 21 20 18 27 27 N 1.32248 * 120.11112 * 0.02866 * 17 16 15 28 28 H 0.97004 * 120.00355 * 359.97438 * 1 2 3 29 29 H 1.09010 * 109.47183 * 299.99749 * 9 7 2 30 30 H 1.08994 * 109.47595 * 59.99477 * 9 7 2 31 31 H 1.08997 * 109.47132 * 299.99948 * 10 9 7 32 32 H 1.09002 * 109.46709 * 59.99686 * 10 9 7 33 33 H 1.08997 * 109.47358 * 300.00304 * 11 10 9 34 34 H 1.09002 * 109.47061 * 60.00396 * 11 10 9 35 35 H 0.96993 * 120.00356 * 0.02562 * 12 11 10 36 36 H 1.07997 * 120.05728 * 359.97438 * 14 13 12 37 37 H 1.07999 * 119.90212 * 179.68889 * 16 15 14 38 38 H 1.09002 * 109.48859 * 239.78397 * 20 18 17 39 39 H 1.09005 * 109.48520 * 359.84455 * 20 18 17 40 40 H 1.08997 * 109.49274 * 181.91735 * 22 21 20 41 41 H 1.09004 * 109.48935 * 301.99009 * 22 21 20 42 42 H 1.08991 * 109.58015 * 240.26048 * 23 22 21 43 43 H 1.09002 * 109.67812 * 119.93429 * 23 22 21 44 44 H 1.09001 * 110.11680 * 60.58597 * 24 18 17 45 45 H 1.09003 * 109.57065 * 299.18889 * 25 24 18 46 46 H 1.09001 * 109.68015 * 178.86835 * 25 24 18 47 47 H 1.09005 * 109.48910 * 58.00268 * 26 21 20 48 48 H 1.09003 * 109.49070 * 178.07230 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4002 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1941 -0.0068 10 6 4.0215 -2.6366 -0.0055 11 6 5.5515 -2.6365 -0.0125 12 7 6.0398 -4.0178 -0.0106 13 6 7.4064 -4.2718 -0.0156 14 6 8.3136 -3.2142 -0.0281 15 7 9.6097 -3.4599 -0.0265 16 6 10.0480 -4.7078 -0.0253 17 6 9.1516 -5.7591 -0.0185 18 6 9.6572 -7.1788 -0.0165 19 1 8.9020 -7.8361 -0.4475 20 6 10.9445 -7.2663 -0.8414 21 7 12.0411 -7.7370 0.0153 22 6 12.2948 -6.7945 1.1138 23 6 11.0459 -6.6927 1.9938 24 6 9.9608 -7.6143 1.4225 25 6 10.5021 -9.0493 1.3954 26 6 11.7662 -9.0849 0.5320 27 7 7.8507 -5.5217 -0.0139 28 1 -0.4851 0.8401 0.0004 29 1 3.8711 -0.6820 -0.8994 30 1 3.8785 -0.6785 0.8805 31 1 3.6620 -3.1483 0.8872 32 1 3.6544 -3.1525 -0.8927 33 1 5.9107 -2.1250 -0.9054 34 1 5.9189 -2.1205 0.8745 35 1 5.4095 -4.7550 -0.0059 36 1 7.9562 -2.1951 -0.0344 37 1 11.1098 -4.9056 -0.0291 38 1 10.8015 -7.9650 -1.6657 39 1 11.1901 -6.2811 -1.2378 40 1 13.1334 -7.1505 1.7122 41 1 12.5314 -5.8128 0.7033 42 1 10.6857 -5.6641 1.9992 43 1 11.2877 -7.0004 3.0112 44 1 9.0554 -7.5665 2.0275 45 1 9.7507 -9.7150 0.9706 46 1 10.7430 -9.3699 2.4090 47 1 11.6177 -9.7708 -0.3021 48 1 12.6092 -9.4222 1.1350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429805.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:55 Heat of formation + Delta-G solvation = 26.113387 kcal Electronic energy + Delta-G solvation = -26083.701528 eV Core-core repulsion = 22557.925582 eV Total energy + Delta-G solvation = -3525.775945 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68427 -41.17452 -38.02271 -35.73024 -35.38226 -34.05415 -33.05057 -32.53355 -31.95039 -30.00313 -28.56089 -25.95369 -25.17118 -24.33727 -23.89284 -23.75241 -22.38013 -22.03043 -19.19833 -18.79002 -18.44257 -18.29302 -17.60022 -17.16505 -16.96310 -16.70712 -16.56673 -16.34557 -15.64474 -15.58041 -14.79923 -14.54905 -14.17500 -14.07926 -13.88180 -13.77697 -13.70038 -13.24178 -13.18896 -13.06590 -12.88703 -12.84046 -12.67790 -12.53329 -12.50770 -12.37465 -11.87562 -11.77591 -11.68263 -11.63761 -11.34704 -11.26822 -11.23785 -10.77372 -10.75920 -10.04253 -9.21337 -8.83759 -8.29621 -6.34536 -0.05970 0.28812 1.38177 1.39925 1.51422 1.93623 2.36634 2.73926 3.03362 3.06230 3.13003 3.42339 3.50657 3.64037 3.77560 3.79981 4.00013 4.02120 4.14721 4.16660 4.20818 4.25577 4.29142 4.33747 4.37786 4.46887 4.50006 4.58616 4.72661 4.80382 4.86184 4.87846 4.95738 5.00218 5.02727 5.12347 5.13198 5.18322 5.20049 5.29254 5.33039 5.44771 5.54700 5.63481 5.74467 6.10735 6.15514 6.26505 6.39125 6.52934 6.74214 6.97186 7.30218 8.87073 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.034903 B = 0.002144 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.024492 B =13054.524406 C =13452.084834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.534 4.534 8 H 0.030 0.970 9 C -0.009 4.009 10 C -0.102 4.102 11 C 0.131 3.869 12 N -0.708 5.708 13 C 0.354 3.646 14 C -0.031 4.031 15 N -0.414 5.414 16 C -0.030 4.030 17 C 0.145 3.855 18 C -0.061 4.061 19 H 0.088 0.912 20 C 0.058 3.942 21 N -0.529 5.529 22 C 0.052 3.948 23 C -0.153 4.153 24 C -0.075 4.075 25 C -0.142 4.142 26 C 0.051 3.949 27 N -0.526 5.526 28 H 0.266 0.734 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.407 0.593 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.473 -17.272 1.724 34.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.047 4.047 10 C -0.140 4.140 11 C 0.007 3.993 12 N -0.339 5.339 13 C 0.115 3.885 14 C -0.199 4.199 15 N -0.127 5.127 16 C -0.191 4.191 17 C 0.003 3.997 18 C -0.083 4.083 19 H 0.107 0.893 20 C -0.072 4.072 21 N -0.249 5.249 22 C -0.077 4.077 23 C -0.192 4.192 24 C -0.095 4.095 25 C -0.181 4.181 26 C -0.077 4.077 27 N -0.250 5.250 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.192 0.808 37 H 0.198 0.802 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 29.722 -16.957 1.415 34.248 hybrid contribution -2.011 0.608 0.577 2.179 sum 27.711 -16.348 1.993 32.236 Atomic orbital electron populations 1.70076 1.08468 1.28190 1.52647 1.26087 0.95658 1.03811 0.94133 0.85621 0.79691 0.77867 0.79253 1.19155 1.21399 1.16236 1.21489 0.92274 0.93025 1.50449 0.95160 1.19453 0.93742 0.94198 0.97341 1.21453 0.92572 0.98350 1.01648 1.21582 0.94409 0.80886 1.02399 1.44701 1.01814 1.09115 1.78242 1.19544 0.87256 0.90375 0.91352 1.23284 0.88778 1.00212 1.07660 1.68240 1.15173 1.23147 1.06101 1.23485 1.02147 0.87741 1.05716 1.22151 0.87813 0.98068 0.91671 1.20895 0.99517 0.89599 0.98250 0.89331 1.22444 0.86689 1.02606 0.95415 1.62577 1.39329 1.03066 1.19926 1.22295 0.96630 0.97005 0.91733 1.22321 0.96776 0.99351 1.00729 1.21055 0.98257 0.96367 0.93818 1.22235 0.99181 0.94712 1.02016 1.22312 0.96594 0.90089 0.98705 1.67774 1.17189 1.20658 1.19397 0.92553 0.95501 0.95390 0.92511 0.92463 0.90601 0.90764 0.75690 0.80778 0.80205 0.88767 0.89899 0.88970 0.90319 0.92945 0.90613 0.91968 0.91167 0.90484 0.89721 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.00 -0.02 5.47 84.66 0.46 0.44 16 3 Si 0.95 42.99 27.47 68.60 1.88 44.87 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 7 C -0.53 -30.00 9.66 25.60 0.25 -29.75 16 8 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.10 -3.55 5.27 30.59 0.16 -3.39 16 11 C 0.13 3.53 4.90 86.38 0.42 3.95 16 12 N -0.71 -18.74 5.73 -344.71 -1.97 -20.71 16 13 C 0.35 9.70 7.67 133.04 1.02 10.72 16 14 C -0.03 -0.82 10.49 84.94 0.89 0.07 16 15 N -0.41 -10.77 10.49 -194.68 -2.04 -12.81 16 16 C -0.03 -0.67 7.72 84.61 0.65 -0.01 16 17 C 0.15 3.27 5.41 42.48 0.23 3.50 16 18 C -0.06 -1.02 2.64 -11.36 -0.03 -1.05 16 19 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 20 C 0.06 0.77 5.44 86.35 0.47 1.24 16 21 N -0.53 -6.29 5.22 -895.17 -4.67 -10.96 16 22 C 0.05 0.58 5.63 86.33 0.49 1.07 16 23 C -0.15 -2.11 5.19 30.77 0.16 -1.95 16 24 C -0.08 -1.13 2.97 -10.40 -0.03 -1.16 16 25 C -0.14 -1.52 5.75 30.77 0.18 -1.34 16 26 C 0.05 0.48 6.09 86.34 0.53 1.00 16 27 N -0.53 -14.26 10.45 -180.74 -1.89 -16.15 16 28 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 29 H 0.03 1.10 7.58 -2.38 -0.02 1.09 16 30 H 0.03 1.17 7.19 -2.39 -0.02 1.15 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 33 H 0.08 1.91 7.93 -2.39 -0.02 1.89 16 34 H 0.07 1.89 7.95 -2.39 -0.02 1.87 16 35 H 0.41 10.59 8.60 -92.71 -0.80 9.79 16 36 H 0.18 4.03 6.73 -2.91 -0.02 4.01 16 37 H 0.18 3.14 4.19 -2.91 -0.01 3.13 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.18 5.78 -2.38 -0.01 1.16 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.89 6.48 -2.39 -0.02 0.87 16 42 H 0.05 0.92 5.88 -2.39 -0.01 0.91 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -67.05 362.59 -2.32 -69.37 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.11 Total: 22.52 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 5.97 Total: -16.94 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -10.28 Total: -119.82 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -67.05 -2.32 -69.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429805.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.480 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds