Wall clock time and date at job start Tue Mar 31 2020 11:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99459 * 2 1 4 4 H 1.48502 * 109.47009 * 239.99859 * 3 2 1 5 5 H 1.48492 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46739 * 120.00089 * 3 2 1 7 7 C 1.37875 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47382 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.38994 * 120.00042 * 179.97438 * 12 11 10 14 14 C 1.39336 * 120.09626 * 359.97438 * 13 12 11 15 15 N 1.31922 * 119.89275 * 179.97438 * 14 13 12 16 16 C 1.32280 * 120.08524 * 0.02562 * 15 14 13 17 17 C 1.38157 * 120.18932 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.94288 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.58231 * 154.88632 * 18 17 16 20 20 C 1.53145 * 109.57608 * 34.62013 * 18 17 16 21 21 N 1.46908 * 109.37088 * 240.20693 * 20 18 17 22 22 C 1.46948 * 111.05735 * 297.99814 * 21 20 18 23 23 C 1.53398 * 109.38324 * 61.88844 * 22 21 20 24 24 C 1.53389 * 109.57807 * 275.14918 * 18 17 16 25 25 C 1.53671 * 108.45259 * 60.96167 * 24 18 17 26 26 C 1.46939 * 111.05631 * 61.99487 * 21 20 18 27 27 N 1.32243 * 120.11225 * 359.70659 * 17 16 15 28 28 H 0.97003 * 120.00225 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47144 * 59.99942 * 9 7 2 30 30 H 1.09007 * 109.47435 * 300.00578 * 9 7 2 31 31 H 1.09007 * 109.46799 * 300.00099 * 10 9 7 32 32 H 1.09000 * 109.47168 * 59.99731 * 10 9 7 33 33 H 1.09007 * 109.47031 * 299.99708 * 11 10 9 34 34 H 1.09000 * 109.47392 * 59.99619 * 11 10 9 35 35 H 0.97003 * 119.99743 * 359.97438 * 12 11 10 36 36 H 1.08003 * 120.05777 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.90259 * 180.02562 * 16 15 14 38 38 H 1.08992 * 109.49165 * 0.17921 * 20 18 17 39 39 H 1.09001 * 109.48554 * 120.24112 * 20 18 17 40 40 H 1.08995 * 109.48990 * 181.92005 * 22 21 20 41 41 H 1.09000 * 109.49083 * 301.99145 * 22 21 20 42 42 H 1.08999 * 109.53897 * 240.34284 * 23 22 21 43 43 H 1.09002 * 109.64752 * 119.94183 * 23 22 21 44 44 H 1.08997 * 110.11080 * 300.19664 * 24 18 17 45 45 H 1.08995 * 109.53817 * 299.08634 * 25 24 18 46 46 H 1.09004 * 109.64739 * 178.80533 * 25 24 18 47 47 H 1.08996 * 109.49208 * 58.00237 * 26 21 20 48 48 H 1.09004 * 109.48876 * 178.05427 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9692 -7.4110 -0.0019 14 6 0.5997 -7.6679 -0.0009 15 7 0.1644 -8.9133 -0.0015 16 6 1.0261 -9.9169 -0.0026 17 6 2.3847 -9.6661 -0.0025 18 6 3.3615 -10.8137 -0.0032 19 1 4.3064 -10.4890 -0.4389 20 6 2.7898 -11.9737 -0.8235 21 7 2.6527 -13.1572 0.0359 22 6 3.9597 -13.5926 0.5474 23 6 4.5677 -12.4765 1.4064 24 6 3.5960 -11.2900 1.4359 25 6 2.2554 -11.7699 2.0140 26 6 1.7146 -12.9036 1.1381 27 7 2.8295 -8.4207 -0.0073 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6042 -0.8906 32 1 2.8721 -3.6043 0.8894 33 1 0.8535 -5.0450 0.8887 34 1 0.8540 -5.0445 -0.8913 35 1 3.3861 -5.9232 -0.0021 36 1 -0.1044 -6.8489 0.0004 37 1 0.6665 -10.9353 -0.0035 38 1 1.8122 -11.6943 -1.2162 39 1 3.4628 -12.2007 -1.6503 40 1 3.8328 -14.4901 1.1527 41 1 4.6241 -13.8087 -0.2892 42 1 5.5171 -12.1602 0.9745 43 1 4.7293 -12.8415 2.4207 44 1 3.9980 -10.4761 2.0392 45 1 1.5449 -10.9434 2.0213 46 1 2.4038 -12.1331 3.0309 47 1 0.7445 -12.6180 0.7315 48 1 1.6058 -13.8070 1.7382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168429808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:59 Heat of formation + Delta-G solvation = 42.983384 kcal Electronic energy + Delta-G solvation = -26021.635368 eV Core-core repulsion = 22496.590961 eV Total energy + Delta-G solvation = -3525.044407 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83474 -40.31722 -36.75591 -34.47755 -33.95871 -32.63312 -32.27556 -31.37335 -30.98917 -28.82878 -26.67526 -24.92537 -24.13473 -23.31375 -23.15037 -23.06504 -21.41991 -20.51651 -18.02583 -17.74589 -17.35910 -16.86442 -16.46589 -16.25469 -16.18729 -15.85751 -15.29425 -14.61644 -14.39750 -14.37267 -13.76216 -13.43563 -13.32439 -13.05954 -12.63790 -12.53884 -12.52034 -12.37302 -12.24071 -12.06486 -11.91773 -11.87011 -11.44735 -11.31069 -11.08799 -10.94753 -10.82891 -10.66539 -10.63911 -10.61141 -10.04260 -9.71109 -9.57638 -9.22885 -8.99895 -8.60678 -8.43146 -7.74910 -6.08122 -4.11352 0.96860 1.36067 3.06196 3.28518 3.33439 3.35598 3.61249 3.76162 3.98877 4.25140 4.39263 4.41756 4.43517 4.55808 4.58441 4.70120 4.77503 4.87095 4.89439 4.98348 5.07054 5.13602 5.18687 5.27886 5.36031 5.39253 5.47032 5.53985 5.54843 5.56005 5.58505 5.68035 5.77086 5.80480 5.84701 5.89972 5.93173 6.24476 6.44224 6.51229 6.68213 6.70029 6.83721 6.91244 7.50971 7.53961 7.60053 7.65564 7.89534 8.04210 8.30842 8.94617 9.53276 11.03034 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.002036 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.547784 B =13746.093778 C =14126.325265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.118 3.882 12 N -0.707 5.707 13 C 0.367 3.633 14 C -0.018 4.018 15 N -0.398 5.398 16 C -0.038 4.038 17 C 0.145 3.855 18 C -0.065 4.065 19 H 0.093 0.907 20 C 0.053 3.947 21 N -0.527 5.527 22 C 0.051 3.949 23 C -0.148 4.148 24 C -0.075 4.075 25 C -0.158 4.158 26 C 0.050 3.950 27 N -0.511 5.511 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 -28.319 1.736 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.005 4.005 12 N -0.337 5.337 13 C 0.126 3.874 14 C -0.187 4.187 15 N -0.111 5.111 16 C -0.198 4.198 17 C 0.003 3.997 18 C -0.087 4.087 19 H 0.112 0.888 20 C -0.075 4.075 21 N -0.247 5.247 22 C -0.077 4.077 23 C -0.187 4.187 24 C -0.095 4.095 25 C -0.197 4.197 26 C -0.078 4.078 27 N -0.234 5.234 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.241 0.759 36 H 0.183 0.817 37 H 0.178 0.822 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.579 -28.426 1.416 29.003 hybrid contribution 1.224 1.960 0.590 2.385 sum 6.802 -26.466 2.005 27.400 Atomic orbital electron populations 1.69944 1.06042 1.26900 1.50362 1.25022 0.94886 0.99338 0.95167 0.86629 0.79570 0.82996 0.78644 1.20207 1.21224 1.20223 1.21143 0.92996 0.90890 1.51238 0.92681 1.19026 0.93768 0.90805 0.97651 1.21875 0.99879 0.92767 1.01280 1.21839 0.91966 0.85248 1.01413 1.44941 1.10296 1.00948 1.77496 1.19482 0.90541 0.86790 0.90610 1.23152 0.93184 0.95382 1.07012 1.68230 1.38097 0.99236 1.05539 1.23137 0.90257 0.99206 1.07222 1.21686 0.93683 0.91426 0.92922 1.20823 0.98186 0.92261 0.97382 0.88842 1.22466 1.02407 0.87401 0.95272 1.62551 1.10140 1.32380 1.19589 1.22283 0.89978 0.97060 0.98399 1.22303 0.98852 0.96216 1.01304 1.21135 0.95884 0.97685 0.94760 1.22423 0.97310 0.99983 0.99954 1.22263 0.95953 0.97746 0.91836 1.67749 1.37805 0.98776 1.19089 0.92813 0.96202 0.96230 0.92484 0.92501 0.91708 0.91683 0.75899 0.81679 0.82186 0.89498 0.89784 0.90508 0.90481 0.91331 0.91288 0.90050 0.91044 0.91400 0.90329 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.33 9.11 -34.45 -0.31 -14.64 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.12 1.83 4.90 -4.04 -0.02 1.81 16 12 N -0.71 -10.13 5.73 -60.30 -0.35 -10.48 16 13 C 0.37 5.39 7.67 -154.73 -1.19 4.20 16 14 C -0.02 -0.26 10.49 -17.10 -0.18 -0.44 16 15 N -0.40 -5.67 10.49 -12.88 -0.14 -5.81 16 16 C -0.04 -0.46 7.72 -17.39 -0.13 -0.60 16 17 C 0.15 1.76 5.41 -82.44 -0.45 1.31 16 18 C -0.06 -0.60 2.63 -91.49 -0.24 -0.84 16 19 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 20 C 0.05 0.42 5.44 -3.74 -0.02 0.40 16 21 N -0.53 -3.92 5.22 -234.12 -1.22 -5.14 16 22 C 0.05 0.32 6.10 -3.59 -0.02 0.30 16 23 C -0.15 -0.96 5.77 -26.32 -0.15 -1.12 16 24 C -0.07 -0.63 2.99 -89.87 -0.27 -0.90 16 25 C -0.16 -1.26 5.19 -26.31 -0.14 -1.40 16 26 C 0.05 0.36 5.63 -3.74 -0.02 0.34 16 27 N -0.51 -7.27 10.45 -8.48 -0.09 -7.36 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.99 7.94 -51.93 -0.41 0.57 16 34 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 35 H 0.41 5.54 8.60 -40.82 -0.35 5.19 16 36 H 0.17 2.21 6.73 -52.48 -0.35 1.86 16 37 H 0.16 1.61 4.19 -52.49 -0.22 1.39 16 38 H 0.09 0.73 5.78 -51.93 -0.30 0.43 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.69 5.88 -51.93 -0.31 0.39 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.56 6.48 -51.93 -0.34 0.22 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -29.93 366.23 -11.80 -41.73 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.73 Total: 2.75 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.52 Total: -11.96 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -1.05 Total: -54.25 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.93 -11.80 -41.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.715 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds