Wall clock time and date at job start Tue Mar 31 2020 11:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99459 * 2 1 4 4 H 1.48502 * 109.47009 * 239.99859 * 3 2 1 5 5 H 1.48492 * 109.47336 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46739 * 120.00089 * 3 2 1 7 7 C 1.37875 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99398 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47471 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47382 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47146 * 179.97438 * 11 10 9 13 13 C 1.38994 * 120.00042 * 179.97438 * 12 11 10 14 14 C 1.39336 * 120.09626 * 359.97438 * 13 12 11 15 15 N 1.31922 * 119.89275 * 179.97438 * 14 13 12 16 16 C 1.32280 * 120.08524 * 0.02562 * 15 14 13 17 17 C 1.38157 * 120.18932 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.94288 * 179.97438 * 17 16 15 19 19 H 1.08996 * 109.58231 * 154.88632 * 18 17 16 20 20 C 1.53145 * 109.57608 * 34.62013 * 18 17 16 21 21 N 1.46908 * 109.37088 * 240.20693 * 20 18 17 22 22 C 1.46948 * 111.05735 * 297.99814 * 21 20 18 23 23 C 1.53398 * 109.38324 * 61.88844 * 22 21 20 24 24 C 1.53389 * 109.57807 * 275.14918 * 18 17 16 25 25 C 1.53671 * 108.45259 * 60.96167 * 24 18 17 26 26 C 1.46939 * 111.05631 * 61.99487 * 21 20 18 27 27 N 1.32243 * 120.11225 * 359.70659 * 17 16 15 28 28 H 0.97003 * 120.00225 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47144 * 59.99942 * 9 7 2 30 30 H 1.09007 * 109.47435 * 300.00578 * 9 7 2 31 31 H 1.09007 * 109.46799 * 300.00099 * 10 9 7 32 32 H 1.09000 * 109.47168 * 59.99731 * 10 9 7 33 33 H 1.09007 * 109.47031 * 299.99708 * 11 10 9 34 34 H 1.09000 * 109.47392 * 59.99619 * 11 10 9 35 35 H 0.97003 * 119.99743 * 359.97438 * 12 11 10 36 36 H 1.08003 * 120.05777 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.90259 * 180.02562 * 16 15 14 38 38 H 1.08992 * 109.49165 * 0.17921 * 20 18 17 39 39 H 1.09001 * 109.48554 * 120.24112 * 20 18 17 40 40 H 1.08995 * 109.48990 * 181.92005 * 22 21 20 41 41 H 1.09000 * 109.49083 * 301.99145 * 22 21 20 42 42 H 1.08999 * 109.53897 * 240.34284 * 23 22 21 43 43 H 1.09002 * 109.64752 * 119.94183 * 23 22 21 44 44 H 1.08997 * 110.11080 * 300.19664 * 24 18 17 45 45 H 1.08995 * 109.53817 * 299.08634 * 25 24 18 46 46 H 1.09004 * 109.64739 * 178.80533 * 25 24 18 47 47 H 1.08996 * 109.49208 * 58.00237 * 26 21 20 48 48 H 1.09004 * 109.48876 * 178.05427 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9692 -7.4110 -0.0019 14 6 0.5997 -7.6679 -0.0009 15 7 0.1644 -8.9133 -0.0015 16 6 1.0261 -9.9169 -0.0026 17 6 2.3847 -9.6661 -0.0025 18 6 3.3615 -10.8137 -0.0032 19 1 4.3064 -10.4890 -0.4389 20 6 2.7898 -11.9737 -0.8235 21 7 2.6527 -13.1572 0.0359 22 6 3.9597 -13.5926 0.5474 23 6 4.5677 -12.4765 1.4064 24 6 3.5960 -11.2900 1.4359 25 6 2.2554 -11.7699 2.0140 26 6 1.7146 -12.9036 1.1381 27 7 2.8295 -8.4207 -0.0073 28 1 -0.4850 0.8401 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8720 -3.6042 -0.8906 32 1 2.8721 -3.6043 0.8894 33 1 0.8535 -5.0450 0.8887 34 1 0.8540 -5.0445 -0.8913 35 1 3.3861 -5.9232 -0.0021 36 1 -0.1044 -6.8489 0.0004 37 1 0.6665 -10.9353 -0.0035 38 1 1.8122 -11.6943 -1.2162 39 1 3.4628 -12.2007 -1.6503 40 1 3.8328 -14.4901 1.1527 41 1 4.6241 -13.8087 -0.2892 42 1 5.5171 -12.1602 0.9745 43 1 4.7293 -12.8415 2.4207 44 1 3.9980 -10.4761 2.0392 45 1 1.5449 -10.9434 2.0213 46 1 2.4038 -12.1331 3.0309 47 1 0.7445 -12.6180 0.7315 48 1 1.6058 -13.8070 1.7382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168429808.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:58 Heat of formation + Delta-G solvation = 23.757992 kcal Electronic energy + Delta-G solvation = -26022.469044 eV Core-core repulsion = 22496.590961 eV Total energy + Delta-G solvation = -3525.878083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.68015 -41.16356 -38.00832 -35.74857 -35.39533 -33.97674 -33.01186 -32.36349 -31.93490 -29.89513 -28.31256 -25.98117 -25.24920 -24.51076 -23.88852 -23.74871 -22.47529 -22.08386 -19.07729 -18.60205 -18.33093 -18.30227 -17.59018 -17.16075 -16.94743 -16.72042 -16.54612 -16.46522 -15.71067 -15.60778 -14.59565 -14.36959 -14.09851 -13.99236 -13.85722 -13.74225 -13.68780 -13.22921 -13.18085 -13.05200 -12.84994 -12.81568 -12.54696 -12.54285 -12.51550 -12.43078 -12.40888 -11.75620 -11.69862 -11.50109 -11.27982 -11.24767 -11.22102 -10.77230 -10.55610 -10.05196 -9.20913 -8.84744 -8.21257 -6.31802 -0.07012 0.27812 1.40320 1.42373 1.50326 1.92259 2.40612 2.72873 3.03567 3.12610 3.12958 3.41267 3.49761 3.64393 3.77088 3.80665 4.02023 4.05026 4.14602 4.17374 4.20604 4.25811 4.29216 4.34223 4.38619 4.47529 4.51898 4.58749 4.73152 4.87862 4.89743 4.90929 4.96229 5.03613 5.12553 5.13164 5.13676 5.18879 5.20574 5.29631 5.34065 5.49089 5.70028 5.71678 5.82901 6.10928 6.16080 6.21949 6.39774 6.52187 6.84708 6.96351 7.37358 8.90093 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.002036 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.547784 B =13746.093778 C =14126.325265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.134 3.866 12 N -0.705 5.705 13 C 0.355 3.645 14 C -0.034 4.034 15 N -0.414 5.414 16 C -0.030 4.030 17 C 0.146 3.854 18 C -0.061 4.061 19 H 0.090 0.910 20 C 0.058 3.942 21 N -0.529 5.529 22 C 0.051 3.949 23 C -0.141 4.141 24 C -0.075 4.075 25 C -0.154 4.154 26 C 0.051 3.949 27 N -0.523 5.523 28 H 0.264 0.736 29 H -0.001 1.001 30 H -0.002 1.002 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.529 -30.061 1.771 31.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.142 4.142 11 C 0.010 3.990 12 N -0.336 5.336 13 C 0.115 3.885 14 C -0.202 4.202 15 N -0.127 5.127 16 C -0.191 4.191 17 C 0.003 3.997 18 C -0.082 4.082 19 H 0.108 0.892 20 C -0.072 4.072 21 N -0.249 5.249 22 C -0.077 4.077 23 C -0.180 4.180 24 C -0.095 4.095 25 C -0.193 4.193 26 C -0.077 4.077 27 N -0.247 5.247 28 H 0.072 0.928 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.186 0.814 37 H 0.199 0.801 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.997 -30.177 1.451 31.011 hybrid contribution 0.786 2.375 0.598 2.572 sum 7.783 -27.802 2.049 28.943 Atomic orbital electron populations 1.70074 1.07665 1.27850 1.51477 1.25947 0.95775 1.03273 0.94826 0.85538 0.78289 0.78329 0.79119 1.19251 1.20972 1.19279 1.21637 0.93580 0.92313 1.50701 0.92130 1.18918 0.94284 0.92342 0.95575 1.21573 0.98646 0.92297 1.01647 1.21503 0.91577 0.84202 1.01668 1.44678 1.10108 1.00648 1.78173 1.19518 0.90769 0.86854 0.91330 1.23228 0.93276 0.95772 1.07916 1.68235 1.38863 0.99538 1.06090 1.23510 0.90218 0.99673 1.05686 1.22186 0.94450 0.91476 0.91542 1.20905 0.97299 0.91688 0.98334 0.89174 1.22444 1.02268 0.87002 0.95449 1.62578 1.10875 1.31726 1.19718 1.22365 0.89392 0.97143 0.98796 1.22267 0.98341 0.95387 1.02029 1.21113 0.96659 0.97982 0.93721 1.22386 0.96522 0.99647 1.00741 1.22294 0.95761 0.97895 0.91731 1.67783 1.38102 0.99458 1.19389 0.92756 0.98268 0.98312 0.92058 0.92102 0.91567 0.91506 0.75515 0.81355 0.80135 0.90002 0.88662 0.89320 0.89659 0.91054 0.90450 0.91892 0.93072 0.90585 0.90431 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.32 4.97 29.85 0.15 1.47 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.13 4.16 4.90 86.38 0.42 4.58 16 12 N -0.70 -20.09 5.73 -344.70 -1.97 -22.06 16 13 C 0.35 10.42 7.67 133.04 1.02 11.44 16 14 C -0.03 -0.99 10.49 84.94 0.89 -0.10 16 15 N -0.41 -11.70 10.49 -194.67 -2.04 -13.74 16 16 C -0.03 -0.71 7.72 84.61 0.65 -0.05 16 17 C 0.15 3.44 5.41 42.48 0.23 3.67 16 18 C -0.06 -1.05 2.63 -11.36 -0.03 -1.08 16 19 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 20 C 0.06 0.80 5.44 86.35 0.47 1.27 16 21 N -0.53 -6.55 5.22 -894.61 -4.67 -11.21 16 22 C 0.05 0.49 6.10 86.43 0.53 1.02 16 23 C -0.14 -1.53 5.77 30.86 0.18 -1.35 16 24 C -0.07 -1.16 2.99 -10.31 -0.03 -1.19 16 25 C -0.15 -2.23 5.19 30.86 0.16 -2.07 16 26 C 0.05 0.61 5.63 86.34 0.49 1.10 16 27 N -0.52 -14.76 10.45 -180.75 -1.89 -16.65 16 28 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.04 7.94 -2.38 -0.02 2.02 16 34 H 0.07 2.05 7.95 -2.39 -0.02 2.03 16 35 H 0.41 11.00 8.60 -92.71 -0.80 10.20 16 36 H 0.17 4.60 6.73 -2.91 -0.02 4.58 16 37 H 0.18 3.39 4.19 -2.91 -0.01 3.37 16 38 H 0.08 1.23 5.78 -2.39 -0.01 1.22 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.05 0.95 5.88 -2.39 -0.01 0.94 16 46 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 47 H 0.08 0.95 6.48 -2.39 -0.02 0.93 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -64.03 366.23 -2.12 -66.15 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.17 Total: 21.51 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.98 Total: -14.28 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -10.29 Total: -118.90 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.03 -2.12 -66.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168429808.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.905 kcal (2) G-P(sol) polarization free energy of solvation -64.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds