Wall clock time and date at job start Tue Mar 31 2020 10:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47392 * 2 1 4 4 C 1.53005 * 109.47002 * 120.00237 * 2 1 3 5 5 C 1.52999 * 109.46814 * 185.00272 * 4 2 1 6 6 C 1.53007 * 109.47101 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47126 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46861 * 179.97438 * 7 6 5 9 9 C 1.36931 * 119.99629 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00755 * 359.97438 * 9 8 7 11 11 C 1.38820 * 119.99864 * 180.02562 * 9 8 7 12 12 N 1.31621 * 119.99590 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47226 * 59.99431 * 13 11 9 15 15 H 1.48496 * 109.47152 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46920 * 299.99637 * 13 11 9 17 17 N 1.46503 * 109.46721 * 239.99674 * 2 1 3 18 18 C 1.34770 * 119.99835 * 85.00493 * 17 2 1 19 19 O 1.21278 * 120.00470 * 359.97438 * 18 17 2 20 20 C 1.50697 * 119.99929 * 179.97438 * 18 17 2 21 21 F 1.39901 * 109.54664 * 310.17777 * 20 18 17 22 22 C 1.53181 * 109.54569 * 189.99487 * 20 18 17 23 23 C 1.53090 * 109.16481 * 183.15083 * 22 20 18 24 24 O 1.42905 * 109.41466 * 57.61337 * 23 22 20 25 25 C 1.42905 * 114.09831 * 298.84306 * 24 23 22 26 26 C 1.53087 * 109.41504 * 61.15479 * 25 24 23 27 27 H 1.09003 * 109.47343 * 300.00225 * 1 2 3 28 28 H 1.08994 * 109.47350 * 60.00013 * 1 2 3 29 29 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46578 * 304.99498 * 4 2 1 31 31 H 1.08992 * 109.47553 * 64.99672 * 4 2 1 32 32 H 1.09003 * 109.46763 * 299.99489 * 5 4 2 33 33 H 1.08992 * 109.47550 * 59.99399 * 5 4 2 34 34 H 1.08997 * 109.46591 * 299.99982 * 6 5 4 35 35 H 1.09000 * 109.46972 * 59.99240 * 6 5 4 36 36 H 1.09003 * 109.47206 * 300.00023 * 7 6 5 37 37 H 1.09004 * 109.46938 * 60.00278 * 7 6 5 38 38 H 0.97002 * 119.99979 * 0.02562 * 8 7 6 39 39 H 0.97001 * 119.99102 * 180.02562 * 12 11 9 40 40 H 0.96995 * 119.99970 * 264.99729 * 17 2 1 41 41 H 1.09007 * 109.52008 * 63.25173 * 22 20 18 42 42 H 1.08996 * 109.52389 * 303.06046 * 22 20 18 43 43 H 1.08998 * 109.48371 * 297.63244 * 23 22 20 44 44 H 1.09005 * 109.49161 * 177.59641 * 23 22 20 45 45 H 1.08994 * 109.48072 * 181.14100 * 25 24 23 46 46 H 1.09001 * 109.47741 * 301.17313 * 25 24 23 47 47 H 1.09001 * 109.52122 * 182.48887 * 26 25 24 48 48 H 1.08996 * 109.52817 * 62.29974 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3137 6 6 4.0748 -1.3341 2.5633 7 6 5.5997 -1.2266 2.6274 8 7 6.0879 -1.9162 3.8242 9 6 7.4299 -1.9523 4.0940 10 1 8.1285 -1.4728 3.4244 11 6 7.8926 -2.6062 5.2277 12 7 7.0412 -3.1910 6.0436 13 14 9.7232 -2.6548 5.5962 14 1 10.2348 -1.2690 5.7474 15 1 9.9551 -3.4087 6.8544 16 1 10.4353 -3.3261 4.4792 17 7 2.0182 -0.6907 -1.1962 18 6 2.1470 -0.0184 -2.3571 19 8 1.8583 1.1582 -2.4118 20 6 2.6498 -0.7287 -3.5874 21 9 3.8219 -1.4272 -3.2785 22 6 2.9390 0.2961 -4.6886 23 6 3.3736 -0.4401 -5.9586 24 8 2.3502 -1.3576 -6.3496 25 6 2.0700 -2.3677 -5.3784 26 6 1.5830 -1.7090 -4.0851 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.6054 -0.2617 2.1369 31 1 1.7516 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4259 33 1 3.8532 0.4369 1.3573 34 1 3.6401 -0.8742 3.4507 35 1 3.7864 -2.3843 2.5201 36 1 6.0340 -1.6867 1.7398 37 1 5.8883 -0.1763 2.6705 38 1 5.4605 -2.3472 4.4255 39 1 7.3646 -3.6476 6.8360 40 1 2.2489 -1.6318 -1.1526 41 1 3.7367 0.9643 -4.3639 42 1 2.0384 0.8749 -4.8932 43 1 4.2966 -0.9863 -5.7643 44 1 3.5398 0.2816 -6.7584 45 1 1.2969 -3.0345 -5.7601 46 1 2.9759 -2.9392 -5.1765 47 1 1.4109 -2.4748 -3.3287 48 1 0.6550 -1.1707 -4.2774 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171151743.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:21 Heat of formation + Delta-G solvation = -169.275222 kcal Electronic energy + Delta-G solvation = -26978.961810 eV Core-core repulsion = 22981.651202 eV Total energy + Delta-G solvation = -3997.310607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.14286 -41.16161 -39.71099 -38.13083 -36.89904 -34.85614 -34.29866 -33.00227 -32.29440 -31.59860 -28.85071 -27.14535 -25.93293 -24.85628 -23.85878 -22.72995 -22.06215 -21.70097 -21.04368 -19.17586 -19.02983 -17.96342 -17.34687 -17.06466 -16.76092 -16.70636 -16.36910 -16.17067 -15.92673 -15.65395 -15.43602 -15.33944 -15.12675 -14.61391 -14.21577 -14.11130 -13.90592 -13.64180 -13.61439 -13.47906 -13.27544 -13.05616 -12.90674 -12.85362 -12.51485 -12.47389 -12.31741 -12.21534 -11.90793 -11.86625 -11.82860 -11.68938 -11.52192 -11.43647 -11.04803 -10.95000 -10.55229 -10.21926 -9.03717 -7.98192 -5.27679 1.25677 1.45376 1.48943 1.55289 1.86983 2.54090 2.84141 3.08133 3.19986 3.34869 3.37714 3.55740 3.59879 3.78653 3.98174 4.01550 4.10940 4.14826 4.24851 4.31364 4.37233 4.43177 4.52395 4.56211 4.57573 4.61534 4.70585 4.73074 4.84293 4.85778 4.89194 4.92172 4.95518 4.97548 5.04964 5.06514 5.23615 5.29132 5.37445 5.43471 5.49504 5.50122 6.11729 6.24701 6.31276 6.95899 7.30347 8.06497 8.30488 9.25268 Molecular weight = 316.19amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.002365 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.790846 B =11838.894027 C =12957.765348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.106 4.106 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.253 4.253 10 H 0.072 0.928 11 C -0.076 4.076 12 N -0.969 5.969 13 Si 0.976 3.024 14 H -0.278 1.278 15 H -0.292 1.292 16 H -0.277 1.277 17 N -0.702 5.702 18 C 0.501 3.499 19 O -0.558 6.558 20 C 0.104 3.896 21 F -0.196 7.196 22 C -0.160 4.160 23 C 0.061 3.939 24 O -0.394 6.394 25 C 0.057 3.943 26 C -0.168 4.168 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.015 0.985 37 H 0.012 0.988 38 H 0.375 0.625 39 H 0.253 0.747 40 H 0.413 0.587 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.119 0.881 45 H 0.125 0.875 46 H 0.061 0.939 47 H 0.110 0.890 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 3.262 -24.254 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.385 4.385 10 H 0.090 0.910 11 C -0.268 4.268 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.204 1.204 15 H -0.218 1.218 16 H -0.203 1.203 17 N -0.353 5.353 18 C 0.285 3.715 19 O -0.436 6.436 20 C 0.082 3.918 21 F -0.177 7.177 22 C -0.198 4.198 23 C -0.016 4.016 24 O -0.313 6.313 25 C -0.019 4.019 26 C -0.206 4.206 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.206 0.794 39 H 0.062 0.938 40 H 0.250 0.750 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.080 0.920 47 H 0.128 0.872 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.010 4.134 -24.465 30.082 hybrid contribution 1.312 -0.516 1.176 1.836 sum -15.697 3.618 -23.289 28.317 Atomic orbital electron populations 1.22108 0.93682 1.03134 1.02502 1.21083 0.94913 0.96711 0.83594 0.91213 1.21858 0.94538 1.02109 0.96949 1.21435 0.96011 1.00138 0.96874 1.21592 0.93693 1.00966 0.98700 1.20848 0.94318 0.94233 0.88420 1.42612 1.04540 1.65467 1.26521 1.19619 0.85333 1.28010 1.05513 0.90977 1.25622 1.02359 1.01070 0.97733 1.69810 1.34809 1.41840 1.15511 0.85174 0.79692 0.77689 0.76995 1.20387 1.21751 1.20271 1.46094 1.65308 1.14815 1.09072 1.20958 0.78054 0.87089 0.85360 1.90716 1.51320 1.16611 1.84987 1.21299 0.83643 0.93361 0.93483 1.92920 1.50030 1.80552 1.94204 1.22584 1.04935 0.97625 0.94677 1.22699 0.90281 0.92402 0.96187 1.87945 1.57609 1.42661 1.43070 1.22752 1.01932 0.89963 0.87267 1.22818 0.97744 0.99324 1.00678 0.90311 0.93532 0.90858 0.89134 0.89634 0.92032 0.92634 0.92192 0.91818 0.96671 0.96981 0.79365 0.93823 0.75024 0.89684 0.88658 0.92215 0.86258 0.85694 0.92033 0.87159 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 71.98 0.68 -1.55 16 2 C 0.14 2.44 2.57 44.99 0.12 2.56 16 3 H 0.07 1.53 7.58 -2.39 -0.02 1.52 16 4 C -0.12 -1.97 4.75 30.60 0.15 -1.83 16 5 C -0.11 -2.50 5.10 30.60 0.16 -2.34 16 6 C -0.11 -3.45 5.33 30.60 0.16 -3.28 16 7 C 0.15 6.14 6.26 86.38 0.54 6.68 16 8 N -0.75 -39.63 5.60 -343.44 -1.92 -41.55 16 9 C -0.25 -14.67 9.99 84.04 0.84 -13.83 16 10 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 12 N -0.97 -60.15 13.06 21.65 0.28 -59.86 16 13 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 14 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 17 N -0.70 -11.81 4.50 -442.54 -1.99 -13.81 16 18 C 0.50 10.32 6.77 87.66 0.59 10.91 16 19 O -0.56 -15.26 15.59 -3.02 -0.05 -15.31 16 20 C 0.10 1.74 1.07 -11.42 -0.01 1.73 16 21 F -0.20 -3.78 16.01 44.97 0.72 -3.06 16 22 C -0.16 -2.64 4.61 30.68 0.14 -2.50 16 23 C 0.06 0.84 6.72 72.01 0.48 1.33 16 24 O -0.39 -6.14 10.77 -148.98 -1.60 -7.74 16 25 C 0.06 0.64 6.72 72.01 0.48 1.12 16 26 C -0.17 -1.90 5.19 30.69 0.16 -1.74 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 39 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.41 5.45 8.57 -92.71 -0.79 4.66 16 41 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.09 1.66 7.89 -2.39 -0.02 1.64 16 43 H 0.06 0.82 7.93 -2.39 -0.02 0.81 16 44 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 46 H 0.06 0.69 7.93 -2.39 -0.02 0.68 16 47 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -72.46 390.07 1.86 -70.60 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.56 Total: 28.65 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 4.96 Total: -6.72 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -3.63 Total: -115.22 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -1.65 Total: -23.05 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.72 Total: -3.06 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -72.46 1.86 -70.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171151743.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.679 kcal (2) G-P(sol) polarization free energy of solvation -72.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds