Wall clock time and date at job start Tue Mar 31 2020 11:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.44793 * 112.18185 * 2 1 4 4 C 1.53335 * 111.17009 * 52.10325 * 3 2 1 5 5 C 1.54507 * 108.19023 * 294.65207 * 3 2 1 6 6 C 1.52662 * 113.00363 * 175.72615 * 3 2 1 7 7 C 1.52843 * 110.40062 * 310.80946 * 6 3 2 8 8 N 1.46830 * 109.23014 * 179.05110 * 7 6 3 9 9 C 1.38229 * 120.00322 * 151.61897 * 8 7 6 10 10 C 1.38995 * 119.99639 * 5.23159 * 9 8 7 11 11 H 1.08001 * 119.99926 * 45.97150 * 10 9 8 12 12 C 1.40816 * 119.99703 * 225.97361 * 10 9 8 13 13 N 1.30342 * 120.00369 * 8.20119 * 12 10 9 14 14 Si 1.86803 * 120.00036 * 188.19503 * 12 10 9 15 15 H 1.48505 * 109.46831 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46863 * 119.99984 * 14 12 10 17 17 H 1.48501 * 109.47455 * 240.00311 * 14 12 10 18 18 C 1.41144 * 120.00493 * 185.22554 * 9 8 7 19 19 C 1.43207 * 120.00293 * 186.18260 * 18 9 8 20 20 N 8.70292 * 146.67985 * 92.36310 * 2 1 3 21 21 C 1.43203 * 120.00069 * 6.19175 * 18 9 8 22 22 N 7.51384 * 169.30864 * 24.51744 * 2 1 3 23 23 C 1.52851 * 108.53544 * 60.05415 * 7 6 3 24 24 C 1.44797 * 112.17769 * 138.96200 * 2 1 3 25 25 C 1.54485 * 108.20691 * 65.24837 * 24 2 1 26 26 C 1.53330 * 111.18039 * 307.76259 * 24 2 1 27 27 H 1.09002 * 109.47150 * 59.99346 * 1 2 3 28 28 H 1.09000 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46645 * 300.00038 * 1 2 3 30 30 H 1.08997 * 109.47046 * 301.95194 * 4 3 2 31 31 H 1.08995 * 109.47202 * 181.94510 * 4 3 2 32 32 H 1.08998 * 109.46925 * 61.94650 * 4 3 2 33 33 H 1.08997 * 109.46928 * 179.97438 * 5 3 2 34 34 H 1.09003 * 109.46643 * 299.97383 * 5 3 2 35 35 H 1.09001 * 109.46851 * 59.97132 * 5 3 2 36 36 H 1.09233 * 109.44373 * 71.25884 * 6 3 2 37 37 H 1.09240 * 109.43441 * 190.38657 * 6 3 2 38 38 H 1.08692 * 110.43689 * 298.84551 * 7 6 3 39 39 H 0.97008 * 120.00447 * 331.61961 * 8 7 6 40 40 H 0.96993 * 120.00157 * 184.98718 * 13 12 10 41 41 H 1.09226 * 109.38531 * 60.29020 * 23 7 6 42 42 H 1.09234 * 109.37824 * 179.38549 * 23 7 6 43 43 H 1.08996 * 109.47692 * 182.29859 * 25 24 2 44 44 H 1.09006 * 109.47065 * 302.30014 * 25 24 2 45 45 H 1.09004 * 109.47227 * 62.29373 * 25 24 2 46 46 H 1.08995 * 109.47716 * 298.89998 * 26 24 2 47 47 H 1.09000 * 109.47051 * 58.90388 * 26 24 2 48 48 H 1.09004 * 109.46882 * 178.89641 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0157 1.3408 0.0000 4 6 1.4115 2.1851 1.1283 5 6 1.6308 2.0186 -1.3341 6 6 3.5385 1.3641 0.1047 7 6 4.0077 0.4670 1.2498 8 7 5.4744 0.4906 1.3129 9 6 6.1178 0.2842 2.5188 10 6 5.3833 -0.0531 3.6495 11 1 4.6202 -0.8151 3.5903 12 6 5.6340 0.5988 4.8722 13 7 6.4374 1.6245 4.9113 14 14 4.8150 -0.0061 6.4384 15 1 3.9562 -1.1771 6.1274 16 1 5.8562 -0.4032 7.4198 17 1 3.9818 1.0806 7.0130 18 6 7.5207 0.4158 2.6019 19 6 8.2014 0.0741 3.8146 20 7 8.7413 -0.1971 4.7766 21 6 8.2633 0.8912 1.4736 22 7 8.8524 1.2683 0.5785 23 6 3.5388 -0.9609 0.9717 24 6 2.0156 -1.0114 0.8803 25 6 1.6288 -2.3984 0.3209 26 6 1.4140 -0.9055 2.2867 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 0.3280 2.2209 1.0151 31 1 1.8154 3.1964 1.0816 32 1 1.6616 1.7381 2.0905 33 1 2.0325 3.0316 -1.3560 34 1 2.0435 1.4460 -2.1647 35 1 0.5451 2.0561 -1.4225 36 1 3.9730 1.0115 -0.8334 37 1 3.8748 2.3877 0.2854 38 1 3.6080 0.8203 2.1969 39 1 5.9921 0.6511 0.5083 40 1 6.6669 2.0286 5.7626 41 1 3.9711 -1.3077 0.0305 42 1 3.8765 -1.6167 1.7774 43 1 1.9958 -3.1758 0.9910 44 1 0.5439 -2.4689 0.2422 45 1 2.0738 -2.5293 -0.6656 46 1 1.6534 0.0691 2.7120 47 1 0.3316 -1.0205 2.2284 48 1 1.8291 -1.6900 2.9195 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171623135.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:31 Heat of formation + Delta-G solvation = 56.434536 kcal Electronic energy + Delta-G solvation = -28112.683354 eV Core-core repulsion = 24588.222233 eV Total energy + Delta-G solvation = -3524.461122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.196 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.40716 -37.34832 -35.16758 -35.12163 -34.65254 -33.53218 -32.11253 -29.73387 -28.07180 -27.70318 -26.87599 -26.59435 -26.05310 -25.67549 -21.68669 -20.82448 -20.56973 -18.30365 -17.59056 -17.23731 -16.16027 -15.81771 -15.52132 -15.24358 -14.75757 -14.39804 -14.05783 -13.52135 -13.27208 -13.22052 -12.91970 -12.82568 -12.73772 -12.60792 -12.29753 -12.21655 -12.02683 -11.86983 -11.73026 -11.68490 -11.58862 -11.43832 -11.40415 -11.26269 -11.20589 -11.09349 -11.02612 -10.78513 -10.70639 -10.65867 -10.51414 -10.38602 -10.10509 -9.93540 -9.56229 -9.00116 -7.88582 -7.09050 -6.44561 -5.10037 2.68112 2.98075 3.01910 3.14910 3.74839 3.75686 4.00454 4.05825 4.31640 4.66956 4.70385 4.79352 4.87049 4.93662 5.01942 5.13443 5.34460 5.37796 5.43364 5.51866 5.53444 5.60001 5.61535 5.67151 5.71463 5.76714 5.81191 5.85886 5.87696 5.88905 5.92094 5.99211 6.05384 6.14796 6.17450 6.22160 6.24592 6.33327 6.41000 6.46406 6.61802 6.73853 6.82636 7.16487 7.33187 7.45421 7.64520 7.89026 8.31381 8.51701 8.70579 9.12158 9.58323 9.88398 Molecular weight = 316.20amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.005162 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.390879 B = 5422.947477 C = 6424.610478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.572 5.572 3 C 0.150 3.850 4 C -0.184 4.184 5 C -0.142 4.142 6 C -0.119 4.119 7 C 0.159 3.841 8 N -0.732 5.732 9 C 0.450 3.550 10 C -0.486 4.486 11 H 0.096 0.904 12 C 0.096 3.904 13 N -0.750 5.750 14 Si 0.906 3.094 15 H -0.256 1.256 16 H -0.265 1.265 17 H -0.271 1.271 18 C -0.288 4.288 19 C 0.361 3.639 20 N -0.547 5.547 21 C 0.305 3.695 22 N -0.546 5.546 23 C -0.124 4.124 24 C 0.146 3.854 25 C -0.142 4.142 26 C -0.181 4.181 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.384 0.616 40 H 0.292 0.708 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.919 -1.981 -6.951 19.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.297 5.297 3 C 0.060 3.940 4 C -0.243 4.243 5 C -0.199 4.199 6 C -0.157 4.157 7 C 0.053 3.947 8 N -0.356 5.356 9 C 0.335 3.665 10 C -0.519 4.519 11 H 0.114 0.886 12 C -0.131 4.131 13 N -0.372 5.372 14 Si 0.729 3.271 15 H -0.179 1.179 16 H -0.190 1.190 17 H -0.196 1.196 18 C -0.308 4.308 19 C 0.052 3.948 20 N -0.230 5.230 21 C -0.001 4.001 22 N -0.230 5.230 23 C -0.163 4.163 24 C 0.056 3.944 25 C -0.200 4.200 26 C -0.240 4.240 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.218 0.782 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.170 -1.723 -7.070 17.732 hybrid contribution -0.755 0.207 1.206 1.438 sum -16.925 -1.516 -5.864 17.976 Atomic orbital electron populations 1.22207 0.86537 1.01629 1.00208 1.56482 1.06121 1.08686 1.58383 1.20295 0.93402 0.85764 0.94512 1.22716 1.00872 1.00754 0.99938 1.22307 1.01028 0.99724 0.96888 1.21912 0.93790 1.00833 0.99200 1.20712 0.80946 0.93906 0.99100 1.45345 1.04998 1.75831 1.09452 1.17049 0.87669 0.78888 0.82921 1.19049 1.19982 1.20679 0.92219 0.88568 1.25830 0.94062 0.92834 1.00420 1.69481 1.24182 1.14183 1.29386 0.86250 0.79933 0.79924 0.80963 1.17949 1.18984 1.19623 1.12639 0.88226 1.41948 0.87941 1.24224 0.90379 0.89368 0.90859 1.80921 1.11699 1.18497 1.11836 1.25521 0.92237 0.90160 0.92137 1.81052 1.08855 1.19652 1.13417 1.22162 0.92842 0.98570 1.02723 1.20390 0.94121 0.90427 0.89418 1.22333 1.00865 0.95534 1.01232 1.22714 1.00459 1.02905 0.97966 0.91979 0.91569 0.95375 0.92635 0.92121 0.91936 0.92516 0.92173 0.92862 0.91353 0.90778 0.88653 0.78191 0.89627 0.91645 0.90300 0.92391 0.92923 0.92289 0.92025 0.93038 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 7.54 60.07 0.45 0.82 16 2 N -0.57 -6.10 3.54 -212.79 -0.75 -6.85 16 3 C 0.15 1.64 0.69 -131.94 -0.09 1.55 16 4 C -0.18 -2.00 7.58 37.33 0.28 -1.72 16 5 C -0.14 -1.37 8.11 37.95 0.31 -1.06 16 6 C -0.12 -1.51 4.15 -26.98 -0.11 -1.62 16 7 C 0.16 2.33 2.12 -67.91 -0.14 2.18 16 8 N -0.73 -12.86 5.07 -51.97 -0.26 -13.12 16 9 C 0.45 9.48 6.21 -83.60 -0.52 8.96 16 10 C -0.49 -10.26 6.95 -38.33 -0.27 -10.53 16 11 H 0.10 1.89 6.68 -52.49 -0.35 1.54 16 12 C 0.10 2.10 4.46 -17.21 -0.08 2.02 16 13 N -0.75 -17.76 10.71 55.59 0.60 -17.17 16 14 Si 0.91 17.34 29.58 -169.99 -5.03 12.32 16 15 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 18 C -0.29 -6.75 5.34 -104.94 -0.56 -7.31 16 19 C 0.36 9.19 11.56 -22.47 -0.26 8.93 16 20 N -0.55 -14.46 18.51 41.84 0.77 -13.69 16 21 C 0.31 7.17 14.12 -22.47 -0.32 6.85 16 22 N -0.55 -13.08 18.54 41.84 0.78 -12.30 16 23 C -0.12 -1.64 4.23 -26.98 -0.11 -1.76 16 24 C 0.15 1.65 0.68 -131.95 -0.09 1.56 16 25 C -0.14 -1.43 8.21 37.94 0.31 -1.12 16 26 C -0.18 -2.07 7.66 37.33 0.29 -1.78 16 27 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 28 H 0.07 0.56 5.79 -51.93 -0.30 0.26 16 29 H 0.03 0.26 5.80 -51.93 -0.30 -0.04 16 30 H 0.05 0.54 6.42 -51.93 -0.33 0.21 16 31 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.06 0.76 5.00 -51.93 -0.26 0.50 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.47 6.48 -51.93 -0.34 0.13 16 36 H 0.07 0.87 8.07 -51.80 -0.42 0.45 16 37 H 0.07 0.98 8.04 -51.79 -0.42 0.56 16 38 H 0.10 1.56 5.35 -52.10 -0.28 1.28 16 39 H 0.38 6.73 7.51 -40.82 -0.31 6.42 16 40 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 41 H 0.06 0.88 8.05 -51.80 -0.42 0.47 16 42 H 0.08 1.14 6.99 -51.80 -0.36 0.78 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.48 6.09 -51.93 -0.32 0.16 16 45 H 0.06 0.62 8.12 -51.93 -0.42 0.19 16 46 H 0.06 0.77 5.00 -51.93 -0.26 0.51 16 47 H 0.05 0.52 6.90 -51.93 -0.36 0.16 16 48 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 LS Contribution 368.44 15.07 5.55 5.55 Total: -1.00 -25.90 368.44 -6.27 -32.16 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.01 Total: 7.11 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -0.91 Total: 5.99 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 1.13 Total: -63.13 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -25.90 -6.27 -32.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171623135.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.598 kcal (2) G-P(sol) polarization free energy of solvation -25.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds